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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021194 ID=TCONS_00021194|Name=TCONS_00021194|organism=Clytia hemisphaerica|type=transcript|length=2633bp
CCAGTATTTATTCATGCTACTAgtgtattaaaaatatttaaactattgga
aagatatttttgaaagaGAGAAAGCtggaagaaatgaaaatattttctgc
tGGTTCAAAAATCTTGAcgttaaattttttagaaaatcggaACCTTGTTT
ATTTCAAATCCGCCTTCAGATTTTTCGTATCTTTGTTCGATAAAAAGTTA
GAATCCTTTGAAGTAGGGTTTAATTTTGCCAAAgattaccaaaaattatg
aACCATACCATGCTTGAGTCCATTAAGTTAAACTTTACGTGTGCGTCTTA
AAAATTAGTTTTACTTTGGCGATATTCATTCGTTAAATAAGGTGACGAAG
AATTACTCTCACCAGAATTTGTAGCCAGTGTGAATCCAAAACTCGTTGTA
TTCGCCGAATAAGAACTTTTCCTTCCCTTCCAACCAAAGCATTTCGGAAA
TCGTTTACGCATGCTCATCTTCAAGACACGTGCTgttcttttgttaaaaa
tgtaaatacaaacaatgaaaataccaCGTGAGCTTCTCAAAATGGCGTAA
CATAAACCAAAAATGGCGTTAACTGCAAGTTCAGCTTGACTATAATCACC
GACagttttttgtatttgaatgAAACCTACAATTTCTGTAAAACCCAACA
CGAGACATAAATTTAAAACAAATCGAGTTATTTTATGACCATGCGTAACT
GATGATTTCATGACAGGACGAATCGAAGCAATTTTTCGGGTTAGGGACAA
TATGATGGTACCAAGTGCAAACATAGATAAAGCATATCCTATCCCAATCG
GAATAATATAGAAATATAACCGGGATTTAAATTCGGTCATCCAGCATATT
CCGTTAATCCCGATTCCCGATTTTAGAATTCCGTACGAGTCCAAAAGATG
AGTCAGCAAAACAAATACCAAAGGAACGGATACCGCAAAAAATAAATACG
CTGAAAAACGTCGTTTATCGATTTTCGAAGGAATCACCGCATTTTGGTTG
AAAACTAAGGCTAGTTCGGTTGCCGTTAGAAAGGCCCACATCATAGCACA
TAGGAAAGCCCATTGAACAATAATCGCATGTATTTGACAAAAATGAGTAC
CAGCATTTTCACCCAAATGAAAAGTGACATAAAACATTGTATCACCGATA
AATAACGCACATGTCATGCAAATCGAATTTAATCTCGGTAGATtctgcag
ttctttgaaatacaAGAACCCAAGAATAGACCAAATATACCCACAAATAC
TTAACGGCATAATAAACATGGTCACGTATTTTTCAATGTCATCAACTTGT
CGTTGCCAAGGTAATCTAACGCCATCATGGCCCATAGTTACGGTACCGAG
ATCAAGAATACAGCTACCGTTATGATACTGGTACGGTTTCATGCATGCGT
CTTGAGtacatttcaaatttccaaGATTGAAGCTTTGACCTGATTGACAA
GTCTTTGTGATGGTTCTCCCCATCAGGTTAGCCATTTGAAGTCGATTGTT
CACAACTGAAATCATAAGAGACCAACGTATATGGCCTCCGGGTAGGTCCT
TCAAAAACGTCCTGTATAATTGACGGAACTTCAAATAACGGAGATCATTA
CTACAAACGTGTTTGCTTGTTTTCTTACATTTATGTTTAAATGAACGATC
TGAAAGTTTCACCATAGCCATTGTAAGATTATAAAGTCCACCGCGCTTAA
TCTCTGATATGTCTCCAGACATTAATGAGTGTATTTCTATAGTTGCTGGG
TGATATTTCGTGACGCCGTTACATAAAGCAGTATCTCTAGATTTATATAA
GGTTTCTTGAGAATCAATCACGGGTTGGAAATCATCGTTTTTACTTTGGT
GAGTTTGTCCAGGACATGCAGAAACCATAAAATATTCGGTAATTGAAATA
ATCCCGTCTTTTGAAAACACCGACCGTGGTATAATCGATTCACATGACAA
ACTTCCATCAAGCGACACTTTATCGATGAAGTAATCGATGTAATCGGTCA
ACGATATCGGCTTGTGTTTGTCCCATACAATATCGATACAACACGTTCTC
AAATAAACACATTCGGTTATATTACACGAGCATGTTCGATTCGAATCGAC
ATGAACATTTCTAGCCGAACACAAAAAATCGTTCGCGAATGTACTGTTTA
TATTATCGACCAATTTATCGATTCCGCAATCGTTCGTTtttaaatattcc
aaaaaatcaTTTACAGGGAAATTAGATGCCCGGCAAATTTCAGTAACAGC
GATTATTAAAAGTAGTAAAGTCTTTAAATTCAtaataaaaatcgattttt
gaatCGACTGTCTCGTAGCTGTGGTATTCTTTATACGGGATTATAAACAA
CAGAACTTCAAAACATTCACCAACCAACTGGTACAATAACGCCTTGATTT
GTCACTTGACTTATGTCTTTGTTGACGTCTATTTAAATTCCAGCTATAAA
ACATCTGAAAGAAATCCGCTATCTTCAAAATTCTATTTCTTGTCAACAAT
TGTGACTTAACGTAAGCTCGTGAAAAATTCTTTATCTTTTCAttaatctt
gattttttaaaaattcatatCAAAAGGCATCAAACTAGAAACTGTGTGTA
TTTGTTAGTTAGTACCACTCAGCAAGATTATTT Run BLAST on NCBI transcript from alignment at sc0000379:236787..239475- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021194 ID=TCONS_00021194|Name=TCONS_00021194|organism=Clytia hemisphaerica|type=transcript|length=2689bp|location=Sequence derived from alignment at sc0000379:236787..239475- (Clytia hemisphaerica)
CCAGTATTTATTCATGCTACTAGTGTATTAAAAATATTTAAACTATTGGA
AAGATATTTTTGAAAGAGAGAAAGCTGGAAGAAATGAAAATATTTTCTGC
TGGTTCAAAAATCTTGACGTTAAATTTTTTAGAAAATCGGAACCTTGTTT
ATTTCAAATCCGCCTTCAGATTTTTCGTATCTTTGTTCGATAAAAAGTTA
GAATCCTTTGAAGTAGGGTTTAATTTTGCCAAAGATTACCAAAAATTATG
AACCATACCATGCTTGAGTCCATTAAGTTAAACTTTACGTGTGCGTCTTA
AAAATTAGTTTTACTTTGGCGATATTCATTCGTTAAATAAGGTGACGAAG
AATTACTCTCACCAGAATTTGTAGCCAGTGTGAATCCAAAACTCGTTGTA
TTCGCCGAATAAGAACTTTTCCTTCCCTTCCAACCAAAGCATTTCGGAAA
TCGTTTACGCATGCTCATCTTCAAGACACGTGCTGTTCTTTTGTTAAAAA
TGTAAATACAAACAATGAAAATACCACGTGAGCTTCTCAAAATGGCGTAA
CATAAACCAAAAATGGCATTAACTGTNTACCACGTGAGCTTCTCAAAATG
GCGTAACATAAACCAAAAATGGCGTTAACTGCAAGTTCAGCTTGACTATA
ATCACCGACAGTTTTTTGTATTTGAATGAAACCTACAATTTCTGTAAAAC
CCAACACGAGACATAAATTTAAAACAAATCGAGTTATTTTATGACCATGC
GTAACTGATGATTTCATGACAGGACGAATCGAAGCAATTTTTCGGGTTAG
GGACAATATGATGGTACCAAGTGCAAACATAGATAAAGCATATCCTATCC
CAATCGGAATAATATAGAAATATAACCGGGATTTAAATTCGGTCATCCAG
CATATTCCGTTAATCCCGATTCCCGATTTTAGAATTCCGTACGAGTCCAA
AAGATGAGTCAGCAAAACAAATACCAAAGGAACGGATACCGCAAAAAATA
AATACGCTGAAAAACGTCGTTTATCGATTTTCGAAGGAATCACCGCATTT
TGGTTGAAAACTAAGGCTAGTTCGGTTGCCGTTAGAAAGGCCCACATCAT
AGCACATAGGAAAGCCCATTGAACAATAATCGCATGTATTTGACAAAAAT
GAGTACCAGCATTTTCACCCAAATGAAAAGTGACATAAAACATTGTATCA
CCGATAAATAACGCACATGTCATGCAAATCGAATTTAATCTCGGTAGATT
CTGCAGTTCTTTGAAATACAAGAACCCAAGAATAGACCAAATATACCCAC
AAATACTTAACGGCATAATAAACATGGTCACGTATTTTTCAATGTCATCA
ACTTGTCGTTGCCAAGGTAATCTAACGCCATCATGGCCCATAGTTACGGT
ACCGAGATCAAGAATACAGCTACCGTTATGATACTGGTACGGTTTCATGC
ATGCGTCTTGAGTACATTTCAAATTTCCAAGATTGAAGCTTTGACCTGAT
TGACAAGTCTTTGTGATGGTTCTCCCCATCAGGTTAGCCATTTGAAGTCG
ATTGTTCACAACTGAAATCATAAGAGACCAACGTATATGGCCTCCGGGTA
GGTCCTTCAAAAACGTCCTGTATAATTGACGGAACTTCAAATAACGGAGA
TCATTACTACAAACGTGTTTGCTTGTTTTCTTACATTTATGTTTAAATGA
ACGATCTGAAAGTTTCACCATAGCCATTGTAAGATTATAAAGTCCACCGC
GCTTAATCTCTGATATGTCTCCAGACATTAATGAGTGTATTTCTATAGTT
GCTGGGTGATATTTCGTGACGCCGTTACATAAAGCAGTATCTCTAGATTT
ATATAAGGTTTCTTGAGAATCAATCACGGGTTGGAAATCATCGTTTTTAC
TTTGGTGAGTTTGTCCAGGACATGCAGAAACCATAAAATATTCGGTAATT
GAAATAATCCCGTCTTTTGAAAACACCGACCGTGGTATAATCGATTCACA
TGACAAACTTCCATCAAGCGACACTTTATCGATGAAGTAATCGATGTAAT
CGGTCAACGATATCGGCTTGTGTTTGTCCCATACAATATCGATACAACAC
GTTCTCAAATAAACACATTCGGTTATATTACACGAGCATGTTCGATTCGA
ATCGACATGAACATTTCTAGCCGAACACAAAAAATCGTTCGCGAATGTAC
TGTTTATATTATCGACCAATTTATCGATTCCGCAATCGTTCGTTTTTAAA
TATTCCAAAAAATCATTTACAGGGAAATTAGATGCCCGGCAAATTTCAGT
AACAGCGATTATTAAAAGTAGTAAAGTCTTTAAATTCATAATAAAAATCG
ATTTTTGAATCGACTGTCTCGTAGCTGTGGTATTCTTTATACGGGATTAT
AAACAACAGAACTTCAAAACATTCACCAACCAACTGGTACAATAACGCCT
TGATTTGTCACTTGACTTATGTCTTTGTTGACGTCTATTTAAATTCCAGC
TATAAAACATCTGAAAGAAATCCGCTATCTTCAAAATTCTATTTCTTGTC
AACAATTGTGACTTAACGTAAGCTCGTGAAAAATTCTTTATCTTTTCATT
AATCTTGATTTTTTAAAAATTCATATCAAAAGGCATCAAACTAGAAACTG
TGTGTATTTGTTAGTTAGTACCACTCAGCAAGATTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021194-exon-sc0000379-1575043694:238925..239475 | TCONS_00021194-exon-sc0000379-1575043694:238925..239475 | Clytia hemisphaerica | exon |
| TCONS_00021194-exon-sc0000379-1575043694:236787..238868 | TCONS_00021194-exon-sc0000379-1575043694:236787..238868 | Clytia hemisphaerica | exon |
| TCONS_00021194-exon-sc0000379-1510915933:238925..239475 | TCONS_00021194-exon-sc0000379-1510915933:238925..239475 | Clytia hemisphaerica | exon |
| TCONS_00021194-exon-sc0000379-1510915933:236787..238868 | TCONS_00021194-exon-sc0000379-1510915933:236787..238868 | Clytia hemisphaerica | exon |
| TCONS_00021194-exon-sc0000379-1491911889:238925..239475 | TCONS_00021194-exon-sc0000379-1491911889:238925..239475 | Clytia hemisphaerica | exon |
| TCONS_00021194-exon-sc0000379-1491911889:236787..238868 | TCONS_00021194-exon-sc0000379-1491911889:236787..238868 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379 | supercontig | sc0000379:236787..239475 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0007166 | cell surface receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
The following BLAST results are available for this feature:
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