TCONS_00021227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021227
Unique NameTCONS_00021227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021227 ID=TCONS_00021227|Name=TCONS_00021227|organism=Clytia hemisphaerica|type=transcript|length=495bp
cttaaatattaaaataaaaataatatgcCTAAAATGACTAACAAAGTAGC
TAAAGTTTGATTTCCAAGACCAAGAGCAGATTGAGACCCCAAAACCCTTT
TACTTTGGAAAAAAAAGGCCCTAAAATGTTGCAGCGTCAAAAACCAGGTC
CTAAAGTGTTGCAAAACGTACATTAGGTCATTCCAGATAAAAAAGAATCA
CTTTTTGTCATACTTATAGATTTTTactgttcaaaatttttccaaaaagt
gccaaaaaatcaCGCCCATTTTGCAGCACTGAAATTATGATATTTCCCAA
ACTGTACTCTGCAAACTAATCCATGTTTTTATGTCAATGACGTGGATCAA
ACAATAAGGCGgccattgaaaaattgttctgttcgtGTCTCCTGCCCGCA
TCatattttttactgattttcCAGTGCGAAGATGCGgaaaaaatctagga
aaaatccAGAAGAAACAGCTTAGTTCTTCAAATGTGTTACTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000379:333..827

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021227 ID=TCONS_00021227|Name=TCONS_00021227|organism=Clytia hemisphaerica|type=transcript|length=495bp|location=Sequence derived from alignment at sc0000379:333..827 (Clytia hemisphaerica)
AAAAAGTAACACATTTGAAGAACTAAGCTGTTTCTTCTggatttttccta
gattttttcCGCATCTTCGCACTGgaaaatcagtaaaaaatatGATGCGG
GCAGGAGACacgaacagaacaatttttcaatggcCGCCTTATTGTTTGAT
CCACGTCATTGACATAAAAACATGGATTAGTTTGCAGAGTACAGTTTGGG
AAATATCATAATTTCAGTGCTGCAAAATGGGCGtgattttttggcacttt
ttggaaaaattttgaacagtAAAAATCTATAAGTATGACAAAAAGTGATT
CTTTTTTATCTGGAATGACCTAATGTACGTTTTGCAACACTTTAGGACCT
GGTTTTTGACGCTGCAACATTTTAGGGCCTTTTTTTTCCAAAGTAAAAGG
GTTTTGGGGTCTCAATCTGCTCTTGGTCTTGGAAATCAAACTTTAGCTAC
TTTGTTAGTCATTTTAGgcatattatttttattttaatatttaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011874XLOC_011874Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021227-exon-sc0000379-1491911889:333..827TCONS_00021227-exon-sc0000379-1491911889:333..827Clytia hemisphaericaexon
TCONS_00021227-exon-sc0000379-1510915933:333..827TCONS_00021227-exon-sc0000379-1510915933:333..827Clytia hemisphaericaexon
TCONS_00021227-exon-sc0000379-1575043694:333..827TCONS_00021227-exon-sc0000379-1575043694:333..827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:333..827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124048	0	0	0.137412	2.84386	1.71849	0.47845	0.895838	0	0.258962	0	0.247846	0.165001	0	0.140877	0.0755914	0.0931224	0.0954475	0.527463	0.137988	0	0.351006	0	0	0	0	0.510283	0.181529	0.688418	1.54306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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