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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021230 ID=TCONS_00021230|Name=TCONS_00021230|organism=Clytia hemisphaerica|type=transcript|length=1048bp
AGGGTGGTATCCAATCATTGTTGTCGTCATTTAAGAGGGTCGTATTGGTT
TTTGTTGagttggttgttgttgttgacttGATTGTTCTTGTTGAGTTGGT
TATTGTTGATGAGTTGGTTATTGCTGTTGAGTTGGTTATTGTGGTTGAGT
TGGTTGTTGACTTGGCCATTAAGGAATGTTAAGTTTTGGTCTATGAGATG
GAGTTTCTTATTAATCTCATCAAAGCAGCCTTTCatccaatctttcaaaa
taGTCATAGAACAATTACAAATTGGACTAGTATTTTGTAATACTGTCCGA
GTGGCTGCCTGCTGCCCTGAAAGGTTAGGTGTTGACATTGCATCAAATAC
AGGCACTTAAATCGCTCCTGGCAAGGAACAATTATGCTCAATCGAAGTAT
TTGATTGTTGTATCTTTTGGAGCCTACTATTTGATGAATTAAAACCTGGC
GGGGTGTCAAAATTGTCTCTGTTGGATGTCTTGTGGGTTCTGGAGTTGGT
GGCTTGGTGGGCTCTGGAGTTGGTGGCTTGGTGGGCTCCGGAATTGGTGG
CTTGGTGGGCTCTGGAGTTGGTGGCTTGGTGGGCTCTGGAGTAGGTGGCT
TGGTGGGCTCCGGAGTTGGCGGCTTGGTGGGCTCTGGAGTTGGTTGCTTG
GTGGGATCCGGAGTTGGTGGCTTATTGGGCTCCGGAGTTGGTGGTTTCTC
GGTTGGCGGTACAGCTATTTGCTTGGTTGATGGTTGTTCAGCTGATTGAG
TTTGATATGTTTGCTGTTCTTGACGAGAAGGTGGTTTCTTCAAAAGATTT
GAGGGTTCCAAGCAATCGTTGTTTTTGAGTTTATTGTAGTTGACTCGTTT
GATCAGGAACCCATTAACTTCTTTCACCTTTGCCTCTTTCTGTTGCTAAA
ACTGTCTGATTGACTCTTTTTCACTTGAGCCCATTTCACGAgactaaaat
tgaaaattatgtaaaatagattgatttttgattacttaaatcgtagaaat
tttagcgagactaattttagcgttttagcgagttttccctaacACGGC Run BLAST on NCBI protein sequence of TCONS_00021230-protein >TCONS_00021230-protein ID=TCONS_00021230-protein|Name=TCONS_00021230-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MSTPNLSGQQAATRTVLQNTSPICNCSMTILKDWMKGCFDEINKKLHLID
QNLTFLNGQVNNQLNHNNQLNSNNQLINNNQLNKNNQVNNNNQLNKNQYD
PLK Run BLAST on NCBI transcript from alignment at sc0000379:69115..70162 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021230 ID=TCONS_00021230|Name=TCONS_00021230|organism=Clytia hemisphaerica|type=transcript|length=1048bp|location=Sequence derived from alignment at sc0000379:69115..70162 (Clytia hemisphaerica)
GCCGTgttagggaaaactcgctaaaacgctaaaattagtctcgctaaaat
ttctacgatttaagtaatcaaaaatcaatctattttacataattttcaat
tttagtcTCGTGAAATGGGCTCAAGTGAAAAAGAGTCAATCAGACAGTTT
TAGCAACAGAAAGAGGCAAAGGTGAAAGAAGTTAATGGGTTCCTGATCAA
ACGAGTCAACTACAATAAACTCAAAAACAACGATTGCTTGGAACCCTCAA
ATCTTTTGAAGAAACCACCTTCTCGTCAAGAACAGCAAACATATCAAACT
CAATCAGCTGAACAACCATCAACCAAGCAAATAGCTGTACCGCCAACCGA
GAAACCACCAACTCCGGAGCCCAATAAGCCACCAACTCCGGATCCCACCA
AGCAACCAACTCCAGAGCCCACCAAGCCGCCAACTCCGGAGCCCACCAAG
CCACCTACTCCAGAGCCCACCAAGCCACCAACTCCAGAGCCCACCAAGCC
ACCAATTCCGGAGCCCACCAAGCCACCAACTCCAGAGCCCACCAAGCCAC
CAACTCCAGAACCCACAAGACATCCAACAGAGACAATTTTGACACCCCGC
CAGGTTTTAATTCATCAAATAGTAGGCTCCAAAAGATACAACAATCAAAT
ACTTCGATTGAGCATAATTGTTCCTTGCCAGGAGCGATTTAAGTGCCTGT
ATTTGATGCAATGTCAACACCTAACCTTTCAGGGCAGCAGGCAGCCACTC
GGACAGTATTACAAAATACTAGTCCAATTTGTAATTGTTCTATGACtatt
ttgaaagattggatGAAAGGCTGCTTTGATGAGATTAATAAGAAACTCCA
TCTCATAGACCAAAACTTAACATTCCTTAATGGCCAAGTCAACAACCAAC
TCAACCACAATAACCAACTCAACAGCAATAACCAACTCATCAACAATAAC
CAACTCAACAAGAACAATCaagtcaacaacaacaaccaactCAACAAAAA
CCAATACGACCCTCTTAAATGACGACAACAATGATTGGATACCACCCT Coding sequence (CDS) from alignment at sc0000379:69115..70162 >TCONS_00021230 ID=TCONS_00021230|Name=TCONS_00021230|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000379:69115..70162 (Clytia hemisphaerica)
ATGTCAACACCTAACCTTTCAGGGCAGCAGGCAGCCACTCGGACAGTATT
ACAAAATACTAGTCCAATTTGTAATTGTTCTATGACtattttgaaagatt
ggatGAAAGGCTGCTTTGATGAGATTAATAAGAAACTCCATCTCATAGAC
CAAAACTTAACATTCCTTAATGGCCAAGTCAACAACCAACTCAACCACAA
TAACCAACTCAACAGCAATAACCAACTCATCAACAATAACCAACTCAACA
AGAACAATCaagtcaacaacaacaaccaactCAACAAAAACCAATACGAC
CCTCTTAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021230-exon-sc0000379-1491911889:69115..70162 | TCONS_00021230-exon-sc0000379-1491911889:69115..70162 | Clytia hemisphaerica | exon |
| TCONS_00021230-exon-sc0000379-1510915933:69115..70162 | TCONS_00021230-exon-sc0000379-1510915933:69115..70162 | Clytia hemisphaerica | exon |
| TCONS_00021230-exon-sc0000379-1575043694:69115..70162 | TCONS_00021230-exon-sc0000379-1575043694:69115..70162 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379 | supercontig | sc0000379:69115..70162 . |
Blast
The following BLAST results are available for this feature:
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