TCONS_00021235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021235
Unique NameTCONS_00021235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021235 ID=TCONS_00021235|Name=TCONS_00021235|organism=Clytia hemisphaerica|type=transcript|length=785bp
TATTCATTGATGTTTTGAATACTGTCATGGTACTTCACTCTTTCAAGATA
CTTCATAATGATTTAAAAGCTGATAATTTTGTATTTATAAACACCTGTGT
GAAGCTGATCGATTTTGGAAAAGCTACACACTTTTCCAATCCAAAAACAT
ACAATATTCAACCAGGAAGTGACACtgcaaaaaaatacaatacgTATCAT
CGTCACATTGCATATGAACTGAGAAACATACCAGGATCAAAACAAAGCGT
TCAAACCGATATATTTTCTCTTGGACACATGCTTAAACATCTGCTCTTGT
GCCTTGTGACCAAGTTTTAGAACTAGGAAGAAGTATGAAAGTAAATGAGG
CAGATTTTCGAATCCCCATTAAAAAAGCATTGACTGtgttgatgaaaatg
aaatgatattgcacatttttattactttggtATTTTACCTTCAATAGTAT
GATGAAATTTTTCCTAAGCTATTTCTCTAAGGCTTAGCTGTTACAAAAAC
AGTGTGATCAATTTCTAATTTCATGGATTTGAGTCTCTAATTACACGGTT
TAGGAAAAGTTtacaattttatatatttttggatatcaaaagATCTTtgt
cattttgttgtttttcatgtGTGTTTTTGTTATGGCAGTCTATTtaattt
aaattgttttaatgacttattttttagtgacatttgaaaaatgtcattaA
CATTTAAAAGAAGAGAAACAACAGTAACAAACAGTAACGAAAAAAAAGTA
TCATAGTTcggatgacaccttccaaaaaagtgaag
Run BLAST on NCBI

protein sequence of TCONS_00021235-protein

>TCONS_00021235-protein ID=TCONS_00021235-protein|Name=TCONS_00021235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
FIDVLNTVMVLHSFKILHNDLKADNFVFINTCVKLIDFGKATHFSNPKTY
NIQPGSDTAKKYNTYHRHIAYELRNIPGSKQSVQTDIFSLGHMLKHLLLC
LVTKF
Run BLAST on NCBI

transcript from alignment at sc0000379:140137..140921

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021235 ID=TCONS_00021235|Name=TCONS_00021235|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0000379:140137..140921 (Clytia hemisphaerica)
cttcacttttttggaaggtgtcatccgAACTATGATACTTTTTTTTCGTT
ACTGTTTGTTACTGTTGTTTCTCTTCTTTTAAATGTtaatgacatttttc
aaatgtcactaaaaaataagtcattaaaacaatttaaattaAATAGACTG
CCATAACAAAAACACacatgaaaaacaacaaaatgacaAAGATcttttga
tatccaaaaatatataaaattgtaAACTTTTCCTAAACCGTGTAATTAGA
GACTCAAATCCATGAAATTAGAAATTGATCACACTGTTTTTGTAACAGCT
AAGCCTTAGAGAAATAGCTTAGGAAAAATTTCATCATACTATTGAAGGTA
AAATaccaaagtaataaaaatgtgcaatatcatttcattttcatcaacaC
AGTCAATGCTTTTTTAATGGGGATTCGAAAATCTGCCTCATTTACTTTCA
TACTTCTTCCTAGTTCTAAAACTTGGTCACAAGGCACAAGAGCAGATGTT
TAAGCATGTGTCCAAGAGAAAATATATCGGTTTGAACGCTTTGTTTTGAT
CCTGGTATGTTTCTCAGTTCATATGCAATGTGACGATGATAcgtattgta
tttttttgcaGTGTCACTTCCTGGTTGAATATTGTATGTTTTTGGATTGG
AAAAGTGTGTAGCTTTTCCAAAATCGATCAGCTTCACACAGGTGTTTATA
AATACAAAATTATCAGCTTTTAAATCATTATGAAGTATCTTGAAAGAGTG
AAGTACCATGACAGTATTCAAAACATCAATGAATA

Coding sequence (CDS) from alignment at sc0000379:140137..140921

>TCONS_00021235 ID=TCONS_00021235|Name=TCONS_00021235|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000379:140137..140921 (Clytia hemisphaerica)
CTAAAACTTGGTCACAAGGCACAAGAGCAGATGTTTAAGCATGTGTCCAA
GAGAAAATATATCGGTTTGAACGCTTTGTTTTGATCCTGGTATGTTTCTC
AGTTCATATGCAATGTGACGATGATAcgtattgtatttttttgcaGTGTC
ACTTCCTGGTTGAATATTGTATGTTTTTGGATTGGAAAAGTGTGTAGCTT
TTCCAAAATCGATCAGCTTCACACAGGTGTTTATAAATACAAAATTATCA
GCTTTTAAATCATTATGAAGTATCTTGAAAGAGTGAAGTACCATGACAGT
ATTCAAAACATCAATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011882XLOC_011882Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021235-proteinTCONS_00021235-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021235-exon-sc0000379-1491911889:140137..140921TCONS_00021235-exon-sc0000379-1491911889:140137..140921Clytia hemisphaericaexon
TCONS_00021235-exon-sc0000379-1510915933:140137..140921TCONS_00021235-exon-sc0000379-1510915933:140137..140921Clytia hemisphaericaexon
TCONS_00021235-exon-sc0000379-1575043694:140137..140921TCONS_00021235-exon-sc0000379-1575043694:140137..140921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:140137..140921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.246373	0.600632	0.348695	0.272915	4.73453	2.75674	1.10863	2.66885	1.08997	1.02865	0.686425	0.656333	0.163855	0.127624	0.244823	0.750664	0.462379	0.379139	0.785701	0.479604	0.833727	0.697136	0.42373	0.770464	0.52904	0.708233	0.675653	0.901344	0.820365	0.487563
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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