TCONS_00021243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021243
Unique NameTCONS_00021243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021243 ID=TCONS_00021243|Name=TCONS_00021243|organism=Clytia hemisphaerica|type=transcript|length=480bp
ATACGGTTACAGTCAATTAATAAAAGGATATACACGAATAACAAAAGACA
GTCAAAcatgcattgatctttgtttcactacaaataaaacaaatgtTGCT
GACACATTGAACTACAAAAGTTCGCTCAGTGATCACAATTTAATTGGTAT
AATCCGAAAAATGAACTGTAAACGGTATCTTTCACAAACCATCAAAGCTT
GCGATTACTCAAAGTACAATAATTCGTAGATTACCTTGGGAGAACTGCTT
AATAACGACCGATTTTAACCAAGGTTGGAATCTGTTTAAACATTATATCT
CATCAACTCTTAACAAAAACTGTCCAATTAAAGAGAAACGTACTCGTGGA
AAACCTAACCCATGGCTTACCCAAGAAATCCGTCAACTTCAGGATGCTCG
TGATTACCATAAAAAACAACACGAACGCACCAACTCTCAGCTCCATTGGG
ATCGCTATAAAAACCTTTGTAATACCGTAA
Run BLAST on NCBI

transcript from alignment at sc0000379:396702..397181

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021243 ID=TCONS_00021243|Name=TCONS_00021243|organism=Clytia hemisphaerica|type=transcript|length=480bp|location=Sequence derived from alignment at sc0000379:396702..397181 (Clytia hemisphaerica)
TTACGGTATTACAAAGGTTTTTATAGCGATCCCAATGGAGCTGAGAGTTG
GTGCGTTCGTGTTGTTTTTTATGGTAATCACGAGCATCCTGAAGTTGACG
GATTTCTTGGGTAAGCCATGGGTTAGGTTTTCCACGAGTACGTTTCTCTT
TAATTGGACAGTTTTTGTTAAGAGTTGATGAGATATAATGTTTAAACAGA
TTCCAACCTTGGTTAAAATCGGTCGTTATTAAGCAGTTCTCCCAAGGTAA
TCTACGAATTATTGTACTTTGAGTAATCGCAAGCTTTGATGGTTTGTGAA
AGATACCGTTTACAGTTCATTTTTCGGATTATACCAATTAAATTGTGATC
ACTGAGCGAACTTTTGTAGTTCAATGTGTCAGCAacatttgttttatttg
tagtgaaacaaagatcaatgcatgTTTGACTGTCTTTTGTTATTCGTGTA
TATCCTTTTATTAATTGACTGTAACCGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011890XLOC_011890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021243-exon-sc0000379-1491911889:396702..397181TCONS_00021243-exon-sc0000379-1491911889:396702..397181Clytia hemisphaericaexon
TCONS_00021243-exon-sc0000379-1510915933:396702..397181TCONS_00021243-exon-sc0000379-1510915933:396702..397181Clytia hemisphaericaexon
TCONS_00021243-exon-sc0000379-1575043694:396702..397181TCONS_00021243-exon-sc0000379-1575043694:396702..397181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:396702..397181 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.6656	4.08518	4.00215	2.61032	0.70618	0.139508	0.168311	0	0.330957	0.273295	0.265267	0.174376	0.0870669	0.542519	0.148675	0.159551	0.29483	0	0	0.291252	0.506301	0	0.450311	0.818796	0.140557	0.250887	0	0	0	0.148042
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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