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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021246 ID=TCONS_00021246|Name=TCONS_00021246|organism=Clytia hemisphaerica|type=transcript|length=1801bp
atcgaTATAAAATATATGATAGCCATATTCCTAAAAAGGATTGCTCTATA
ATGGAATTGTCAGCTCAAAACCTTTGCtgaataattcttttttatatGAC
TTTATAAGGATATTAAAGCTTAAggtattcaaaataaaaacaaaccctcc
taaaaaaggcaaaacaagCTATCAAGTTGGTTctgaaaagaatagaaaaa
gAGTAGCTGATCTTGAATTTTGACAATTATAACTTGGATATGATAGGGAA
ATGCTTTTTACACAAGACAGCTTCTTCTTCTGTTGTCATCTTTCCATATC
TTGatgtgaaaatatatttttccatAAAATTATTCCTAAATTTCCCAGTT
GGATCATGTTTGTAACAAAGTGCTCGTAGCTTATCAAGATCAGATCCGTA
aaggttttcaaattttggtccGGACATTTGAAATAGTTTACCAAAGTGAG
GTTTAACATTAAACTTGGATAGAGTGCTCTCAATCAATGGTAGGACAGAA
AGGATTTTTTCATGTTCACGCCACCAGGTGAAATGTATGCCAATGCAGGT
TTGATGTTTTGCAGGACTCATGGGTAGGTTGTCCTCCAACACCATTCTAA
ATTCAGATACTTGAACGAGATGCTGAAACTTATCTTTAATCAAATAAAGA
GCTTCCATTGCATTTATAAAGTGTTCATAAGGAACAAAAAACTCTGTTTG
AATTTCATTTCCTGCAGAACTTGGAGGTTTATCAGGTAAAAAGTGATAAA
TTTTGTCTCTCCATTTACCTACTCCTGTGGTTACATTGACTGAAGAATCT
CGACCTGGAACAGGATGAATTCGATTCCCAGTGATATGCTTTGCACCAAA
GTATTCAATTTCTTTCACTGGTAATGGATCTCCTTCATAGTATTTCTTAC
CAACCCAAACTGAACTCATTTCACGAGTCTTCCATGTACAGAAACAGCTA
AGAAAATCTTGGTGATGCATGATGTTATCAAAAtagtttttgtcaaaaag
tataTCCCATTTCAGATTTTTATAGATAGATTTAGAAACCATGAATGTTG
GCACAAGTTTAATTGTCATTGAAGTAATAACTCCAAGACCACCAAAATTG
AtcaaataatttgtaaaatctGGAGTTGTTGGTTTTGATAACGATTCTAG
CTTCCCATTTGCAAAAACCATATCAAAAGCAACAACTTGTGTTGTAAGAA
TTTGATATTTATGACCAGAGCCATGTGTGCCGGTGATCATTGATCCAACA
ACATTGATGTGGGGTAAAGAAGGTAGATTCTGAATGGCAAAACCTTCTGC
ATCAACAATATCAATCAGTTTTGAATAAGTCATACCAGCCCCAAAAGTAA
CTACAGGCTGTAGACCTAGATCTTCTTCACCACCGATAACTactttgtca
aaataagtcaacGTCATATTTTCAAGGCAAATATGAGCAGTTTCACCCGT
TTCTAAATCTGTGTTATGGCCAGTATCGGCAATTGTGTTGAAGCAATGTC
TTGTACCAATAACTTTCAGTTTTGCATACCGCACATCCTTTATAATCCTT
TGGAGCTCAGGAGTGTTATTTGGAAACAGGACAATATCAGAGGTGTACGT
AACATTCTCAGACCAATTTTTTGCGTACAGGTCACTTCTGGCCATCTTAA
AAAACGTCTAGCTtactaaaaagaaaaagcacttttgttttgttttagaa
GGAAAATGGACATTAACTCATTCAATAAAATTAACCTCTTTCTTTTGCTT
TGGTAAGACAAAAATCTGtctgagagaaaaaaaatttgaacaatGATGTT
T Run BLAST on NCBI protein sequence of TCONS_00021246-protein >TCONS_00021246-protein ID=TCONS_00021246-protein|Name=TCONS_00021246-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
MARSDLYAKNWSENVTYTSDIVLFPNNTPELQRIIKDVRYAKLKVIGTRH
CFNTIADTGHNTDLETGETAHICLENMTLTYFDKVVIGGEEDLGLQPVVT
FGAGMTYSKLIDIVDAEGFAIQNLPSLPHINVVGSMITGTHGSGHKYQIL
TTQVVAFDMVFANGKLESLSKPTTPDFTNYLINFGGLGVITSMTIKLVPT
FMVSKSIYKNLKWDILFDKNYFDNIMHHQDFLSCFCTWKTREMSSVWVGK
KYYEGDPLPVKEIEYFGAKHITGNRIHPVPGRDSSVNVTTGVGKWRDKIY
HFLPDKPPSSAGNEIQTEFFVPYEHFINAMEALYLIKDKFQHLVQVSEFR
MVLEDNLPMSPAKHQTCIGIHFTWWREHEKILSVLPLIESTLSKFNVKPH
FGKLFQMSGPKFENLYGSDLDKLRALCYKHDPTGKFRNNFMEKYIFTSRY
GKMTTEEEAVLCKKHFPIISKL Run BLAST on NCBI transcript from alignment at sc0000379:447506..449306 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021246 ID=TCONS_00021246|Name=TCONS_00021246|organism=Clytia hemisphaerica|type=transcript|length=1801bp|location=Sequence derived from alignment at sc0000379:447506..449306 (Clytia hemisphaerica)
AAACATCattgttcaaattttttttctctcagaCAGATTTTTGTCTTACC
AAAGCAAAAGAAAGAGGTTAATTTTATTGAATGAGTTAATGTCCATTTTC
CttctaaaacaaaacaaaagtgctttttctttttagtaAGCTAGACGTTT
TTTAAGATGGCCAGAAGTGACCTGTACGCAAAAAATTGGTCTGAGAATGT
TACGTACACCTCTGATATTGTCCTGTTTCCAAATAACACTCCTGAGCTCC
AAAGGATTATAAAGGATGTGCGGTATGCAAAACTGAAAGTTATTGGTACA
AGACATTGCTTCAACACAATTGCCGATACTGGCCATAACACAGATTTAGA
AACGGGTGAAACTGCTCATATTTGCCTTGAAAATATGACgttgacttatt
ttgacaaagtAGTTATCGGTGGTGAAGAAGATCTAGGTCTACAGCCTGTA
GTTACTTTTGGGGCTGGTATGACTTATTCAAAACTGATTGATATTGTTGA
TGCAGAAGGTTTTGCCATTCAGAATCTACCTTCTTTACCCCACATCAATG
TTGTTGGATCAATGATCACCGGCACACATGGCTCTGGTCATAAATATCAA
ATTCTTACAACACAAGTTGTTGCTTTTGATATGGTTTTTGCAAATGGGAA
GCTAGAATCGTTATCAAAACCAACAACTCCagattttacaaattatttga
TCAATTTTGGTGGTCTTGGAGTTATTACTTCAATGACAATTAAACTTGTG
CCAACATTCATGGTTTCTAAATCTATCTATAAAAATCTGAAATGGGAtat
actttttgacaaaaactaTTTTGATAACATCATGCATCACCAAGATTTTC
TTAGCTGTTTCTGTACATGGAAGACTCGTGAAATGAGTTCAGTTTGGGTT
GGTAAGAAATACTATGAAGGAGATCCATTACCAGTGAAAGAAATTGAATA
CTTTGGTGCAAAGCATATCACTGGGAATCGAATTCATCCTGTTCCAGGTC
GAGATTCTTCAGTCAATGTAACCACAGGAGTAGGTAAATGGAGAGACAAA
ATTTATCACTTTTTACCTGATAAACCTCCAAGTTCTGCAGGAAATGAAAT
TCAAACAGAGTTTTTTGTTCCTTATGAACACTTTATAAATGCAATGGAAG
CTCTTTATTTGATTAAAGATAAGTTTCAGCATCTCGTTCAAGTATCTGAA
TTTAGAATGGTGTTGGAGGACAACCTACCCATGAGTCCTGCAAAACATCA
AACCTGCATTGGCATACATTTCACCTGGTGGCGTGAACATGAAAAAATCC
TTTCTGTCCTACCATTGATTGAGAGCACTCTATCCAAGTTTAATGTTAAA
CCTCACTTTGGTAAACTATTTCAAATGTCCggaccaaaatttgaaaacct
tTACGGATCTGATCTTGATAAGCTACGAGCACTTTGTTACAAACATGATC
CAACTGGGAAATTTAGGAATAATTTTatggaaaaatatattttcacatCA
AGATATGGAAAGATGACAACAGAAGAAGAAGCTGTCTTGTGTAAAAAGCA
TTTCCCTATCATATCCAAGTTATAATTGTCAAAATTCAAGATCAGCTACT
ctttttctattcttttcagAACCAACTTGATAGcttgttttgcctttttt
aggagggtttgtttttattttgaataccTTAAGCTTTAATATCCTTATAA
AGTCatataaaaaagaattattcaGCAAAGGTTTTGAGCTGACAATTCCA
TTATAGAGCAATCCTTTTTAGGAATATGGCTATCATATATTTTATAtcga
t Coding sequence (CDS) from alignment at sc0000379:447506..449306 >TCONS_00021246 ID=TCONS_00021246|Name=TCONS_00021246|organism=Clytia hemisphaerica|type=CDS|length=1419bp|location=Sequence derived from alignment at sc0000379:447506..449306 (Clytia hemisphaerica)
ATGGCCAGAAGTGACCTGTACGCAAAAAATTGGTCTGAGAATGTTACGTA
CACCTCTGATATTGTCCTGTTTCCAAATAACACTCCTGAGCTCCAAAGGA
TTATAAAGGATGTGCGGTATGCAAAACTGAAAGTTATTGGTACAAGACAT
TGCTTCAACACAATTGCCGATACTGGCCATAACACAGATTTAGAAACGGG
TGAAACTGCTCATATTTGCCTTGAAAATATGACgttgacttattttgaca
aagtAGTTATCGGTGGTGAAGAAGATCTAGGTCTACAGCCTGTAGTTACT
TTTGGGGCTGGTATGACTTATTCAAAACTGATTGATATTGTTGATGCAGA
AGGTTTTGCCATTCAGAATCTACCTTCTTTACCCCACATCAATGTTGTTG
GATCAATGATCACCGGCACACATGGCTCTGGTCATAAATATCAAATTCTT
ACAACACAAGTTGTTGCTTTTGATATGGTTTTTGCAAATGGGAAGCTAGA
ATCGTTATCAAAACCAACAACTCCagattttacaaattatttgaTCAATT
TTGGTGGTCTTGGAGTTATTACTTCAATGACAATTAAACTTGTGCCAACA
TTCATGGTTTCTAAATCTATCTATAAAAATCTGAAATGGGAtatactttt
tgacaaaaactaTTTTGATAACATCATGCATCACCAAGATTTTCTTAGCT
GTTTCTGTACATGGAAGACTCGTGAAATGAGTTCAGTTTGGGTTGGTAAG
AAATACTATGAAGGAGATCCATTACCAGTGAAAGAAATTGAATACTTTGG
TGCAAAGCATATCACTGGGAATCGAATTCATCCTGTTCCAGGTCGAGATT
CTTCAGTCAATGTAACCACAGGAGTAGGTAAATGGAGAGACAAAATTTAT
CACTTTTTACCTGATAAACCTCCAAGTTCTGCAGGAAATGAAATTCAAAC
AGAGTTTTTTGTTCCTTATGAACACTTTATAAATGCAATGGAAGCTCTTT
ATTTGATTAAAGATAAGTTTCAGCATCTCGTTCAAGTATCTGAATTTAGA
ATGGTGTTGGAGGACAACCTACCCATGAGTCCTGCAAAACATCAAACCTG
CATTGGCATACATTTCACCTGGTGGCGTGAACATGAAAAAATCCTTTCTG
TCCTACCATTGATTGAGAGCACTCTATCCAAGTTTAATGTTAAACCTCAC
TTTGGTAAACTATTTCAAATGTCCggaccaaaatttgaaaaccttTACGG
ATCTGATCTTGATAAGCTACGAGCACTTTGTTACAAACATGATCCAACTG
GGAAATTTAGGAATAATTTTatggaaaaatatattttcacatCAAGATAT
GGAAAGATGACAACAGAAGAAGAAGCTGTCTTGTGTAAAAAGCATTTCCC
TATCATATCCAAGTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021246-exon-sc0000379-1491911889:447506..449306 | TCONS_00021246-exon-sc0000379-1491911889:447506..449306 | Clytia hemisphaerica | exon |
| TCONS_00021246-exon-sc0000379-1510915933:447506..449306 | TCONS_00021246-exon-sc0000379-1510915933:447506..449306 | Clytia hemisphaerica | exon |
| TCONS_00021246-exon-sc0000379-1575043694:447506..449306 | TCONS_00021246-exon-sc0000379-1575043694:447506..449306 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379 | supercontig | sc0000379:447506..449306 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0016491 | oxidoreductase activity |
| GO:0003885 | D-arabinono-1,4-lactone oxidase activity |
| GO:0003824 | catalytic activity |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0003885 |
D-arabinono-1,4-lactone oxidase activity |
| molecular_function |
GO:0050660 |
flavin adenine dinucleotide binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
Blast
The following BLAST results are available for this feature:
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