TCONS_00021281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021281
Unique NameTCONS_00021281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021281 ID=TCONS_00021281|Name=TCONS_00021281|organism=Clytia hemisphaerica|type=transcript|length=801bp
TGAAGAAGTTTATATCCTGACATCTCTCTCCCATTTTTGACGGCTGGGAC
TTTTAGCAGAAGATCTTACAAATCTTATTGTTTGGTGACATTTAAGATTC
AAACCATGAATGAAGTTGAGTttattaaagaagaaaaaaaggaccCTTCT
TCATGAGGTATTGTTaactttttctcaattgctTGCTTGTGTTTTCTTAG
TTATAGAGGGTCAGCTCTAGCTTGAGCATAGGTCCCAGGCATAAAAATAG
GTCCCCCCATTTTTAAGCAGCACCCAGTCCTATGTCTAGTATAGACTATA
GAATATTTGTCGATTTATTATTGTCTTCAGGAAAATCTCATCTCTATTCT
TTTGGCATTCTCGAAAGAAAGatgtaaaaaagtctctattTTGCAGTAGC
ATGGTGGGTCAAGTAAAATTTGTGCAAACTGGGTAGGcagttttaaaaga
ttttgataTTCATGCCCTATGATAAGTAAATGTCTTTTAAAATAATGTGA
GTAAAACCAGCATGAAAATACTGCCAGTGTGGAATCCATGCAAAAGCCAC
ACCGGTGATATTTTGAGGATCGAGAAGGTTACACCCAATTGAGGGCATTC
TCACACCTAAGCCGAATATATATTCGGCGTACTGTGTATGAATTCTAGAC
TGGAAATACTGGGgtgttttctctctttttggaaTAAAAACGTGGTGATA
TAAATAGAAATGATAGAAATAGTCAGGTGCCGCCAAATATTTGGCTGTAT
TTTAACTCCTGGTTTTCAttcagacggtgtcaatcgtaCAAATTAAACGc
t
Run BLAST on NCBI

transcript from alignment at sc0000380:21715..22515

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021281 ID=TCONS_00021281|Name=TCONS_00021281|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at sc0000380:21715..22515 (Clytia hemisphaerica)
agCGTTTAATTTGtacgattgacaccgtctgaaTGAAAACCAGGAGTTAA
AATACAGCCAAATATTTGGCGGCACCTGACTATTTCTATCATTTCTATTT
ATATCACCACGTTTTTAttccaaaaagagagaaaacacCCCAGTATTTCC
AGTCTAGAATTCATACACAGTACGCCGAATATATATTCGGCTTAGGTGTG
AGAATGCCCTCAATTGGGTGTAACCTTCTCGATCCTCAAAATATCACCGG
TGTGGCTTTTGCATGGATTCCACACTGGCAGTATTTTCATGCTGGTTTTA
CTCACATTATTTTAAAAGACATTTACTTATCATAGGGCATGAAtatcaaa
atcttttaaaactgCCTACCCAGTTTGCACAAATTTTACTTGACCCACCA
TGCTACTGCAAaatagagacttttttacatCTTTCTTTCGAGAATGCCAA
AAGAATAGAGATGAGATTTTCCTGAAGACAATAATAAATCGACAAATATT
CTATAGTCTATACTAGACATAGGACTGGGTGCTGCTTAAAAATGGGGGGA
CCTATTTTTATGCCTGGGACCTATGCTCAAGCTAGAGCTGACCCTCTATA
ACTAAGAAAACACAAGCAagcaattgagaaaaagttAACAATACCTCATG
AAGAAGggtcctttttttcttctttaataaACTCAACTTCATTCATGGTT
TGAATCTTAAATGTCACCAAACAATAAGATTTGTAAGATCTTCTGCTAAA
AGTCCCAGCCGTCAAAAATGGGAGAGAGATGTCAGGATATAAACTTCTTC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011910XLOC_011910Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021281-exon-sc0000380-1491911889:21715..22515TCONS_00021281-exon-sc0000380-1491911889:21715..22515Clytia hemisphaericaexon
TCONS_00021281-exon-sc0000380-1510915933:21715..22515TCONS_00021281-exon-sc0000380-1510915933:21715..22515Clytia hemisphaericaexon
TCONS_00021281-exon-sc0000380-1575043694:21715..22515TCONS_00021281-exon-sc0000380-1575043694:21715..22515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:21715..22515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0663848	0.0808171	0	0	0.0721311	0	0.0625533	0.121431	0	0	0	0.0680589	0.146075	0	0.0461114	0.0637055	0	0.289712	0.0847868	0	0.12494	0	0.0574243	0	0	0.199548	0.203308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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