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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021293 ID=TCONS_00021293|Name=TCONS_00021293|organism=Clytia hemisphaerica|type=transcript|length=4207bpRun BLAST on NCBI protein sequence of TCONS_00021293-protein >TCONS_00021293-protein ID=TCONS_00021293-protein|Name=TCONS_00021293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1296bp MVHHNKNRKDKFQKLAEKNGLTSSINSNASFASDSNRGQNNSRIDNEYDRRun BLAST on NCBI transcript from alignment at sc0000382:45194..57262+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021293 ID=TCONS_00021293|Name=TCONS_00021293|organism=Clytia hemisphaerica|type=transcript|length=12069bp|location=Sequence derived from alignment at sc0000382:45194..57262+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000382:45194..57262+ >TCONS_00021293 ID=TCONS_00021293|Name=TCONS_00021293|organism=Clytia hemisphaerica|type=CDS|length=46692bp|location=Sequence derived from alignment at sc0000382:45194..57262+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021293 vs. Swiss-Prot (Human)
Match: WHRN (Whirlin OS=Homo sapiens GN=WHRN PE=1 SV=3) HSP 1 Score: 243.432 bits (620), Expect = 3.743e-66 Identity = 142/373 (38.07%), Postives = 216/373 (57.91%), Query Frame = 1
Query: 352 PNSTKVLLLRRNR-EIGFGFSIRGGVEHGTGIFISNINKYSDAQAQGLQIGDQILRANNALFEGIVHDEAVGYIQRQKILQLIVLSLGVIPGNKIALTEYQWMDCYGQPCSPMTSRAEE-----RINESQLKSINPSRHLLSAEDERKINIDVGNSATLGLLIRGGSEYGLGIFVVGIDQDSVADQCGIMVGEQILEINGIDFVNITHADAAEIIRTSRRMTMVLKDVGKIPLSRVVYDRQEWXXXXXXXXXXXXXXXXXXDLIIQ--------EGLPGRLSSHQSLASPVSFQWVEEKARGLLNQDEWATLKYYIREYARQNLTVNEXXXXXXXXXXXXEKMTLIDEIRGIVPPQDIEHFDELMLSMEVASM 1428
P +++ LRR + G GFSIRGG EHG GI++S + S A+ +GL++GDQILR N+ + H EAV ++ K L L V S G IPG + Y W+D G+ SP + + R E +S + HLL DE+K+N+ +G+ +LGL IRGG+EYGLGI++ G+D S A+ G+ VG+QILE+NG F+NI H +A ++++SR + + +KDVG++P +R D +WI +I + DL + +G G + SL + +EE+AR LLN+ E AT+ YY+ EY +++V L ++L L ++ K +L+ E+RG + PQD+E FD L+L E+ SM
Sbjct: 135 PGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRIPGGYVTNHIYTWVDPQGRSISPPSGLPQPHGGALRQQEGDRRS---TLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRLPRARTTVDETKWIASSRIRETMANSAGFLGDLTTEGINKPGFYKGPAGSQVTLSSLGNQTRV-LLEEQARHLLNEQEHATMAYYLDEYRGGSVSVEALVMALFKLLNTHAKFSLLSEVRGTISPQDLERFDHLVLRREIESM 503 The following BLAST results are available for this feature:
BLAST of TCONS_00021293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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