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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021295 ID=TCONS_00021295|Name=TCONS_00021295|organism=Clytia hemisphaerica|type=transcript|length=1970bp
CGCTAACATATATGGCAATGAAAAAATAGTGTCATGAAAATGGCATCACG
GAATAATACGGATGAgtttaagaaaaattatcatcaagaaaaaaaaagTT
GACGTTGGAACGTGAAGGAGTGtacatcaaaattaaaatagacgcgaaaa
aaaaactttttccaaaaacaaaacacgaaatatttgaatattttttgttt
attttctcaaCGACTTCAAAAACCAAGTTGGATCTCATCAATCATTTCAA
CAATCGACATATACTTTATACCAAGATGGCTACAGAAGATTTGCAAAGAA
AACGAGGTCAACTTCAACGTCAGTCCACAATCAAGGAAAACATTGCTAAT
GAACATTTAATCAAACTGGAAGAACTCTGCGATAAACTGAATACAGATTA
CCTACAAGGAATGACAACAAAAGCAGCTAAAAAAGGACTTAAGAATTACG
GATACAACATTTACTCCAAACCAAAAACACAAACTGGATCACTGACACGG
TTATTTCAGAAAGAGCAAACTCGAAGCATGGTTGATAGTTCATGGACTAA
GAGAGACTGGAACCGGGTTTTTAATTCGCGCTCCAAAGAGGAATACAACG
TTGTACGGAACGGGACGCATGAACTTGTCCAGCGGAAAGATATAGTACCT
GGGGATTTAGTCTTATTACAACCAAAACAAATTGTACCGGCAGATATGAG
AGTGATAAGTTATGAAGGAGAACTTGTAGTCGATAATCGTATTATAACTG
GAAATACTGCAGAACTAAAATCAATCAGTGCTACTTCAAATGACTTTTTA
CTATCACAGAATATGATTTTTGGATGTACTGAAATTCTGTCCGGTAGTTG
TGAAGCTATTGTGATTAAAACTGGAAATGAGACTGTTTTCGGACACTTGA
CACAGTTTGCGACTAAAGTTAAACTGGCACGACGTCATGATAGTATGTCA
TTATCGTCTACATCATCAGGATCAAGCAATTCTATTGGTCCATCTACGTC
ACGTGATTTTGAAGATAATAGCAGTCAAAGTTCCAATTCTACACCACCAT
CACCTAGATTTACTTAAATTTCATGACCTCTTTATAGATATTTTATCTTA
CGGTCTTTGCTATAATATCTTCATAAGTTTTTCAGAAACCAAACACAGAA
AAAACTGAGGGGTATAAAGATTAAAGGTCTTGGATAGAAAAGTTTTGAAC
AATAAAGAGCTTGTCTTGAATAATATAAACGGGCCTTAGTTCTGAAAATC
TTAAAACAGGTCTTGAAAAAACTTAGGCCAAAATTGACGTCAAGAAATTA
TAGGATCAACAATGACGTTTTTAGGCCAATTTTTTCTTCCCGAAAGTTCT
TTCCCTTTAAACTCAAGCCAAAAGCCTATTAGACATCATGCCATGTTTTT
TTACATTGTTTGCTATATCGATTAGTGAATTTAATTAATCACTGTACTGA
GATAAAAAATGTCTTAGTAAAACTACTCAGTAAAATCACACGCTCTTTTA
GGATTAATCGCATTACAGTTTCCCTCTTTCGTAAACACTAAAGAGATAAT
GAAAATCAATTATCTCTTTAAGGATAAGGGAAAACTTGTTAGCGATGACT
TTTACTCATAAGCGACTTTATCATTAAGAATTCAAGCATTATATAAAAAT
TAACGTTATTATATATTATGAAGAGATATAATGAAAAGATGTTATGAAAA
TgtaatataaaatattttagaattagATCATGCGTACTTGAAAACCGTGG
GAACCATGGATTAAACGcgttgaataactttttatgacatcaaatatttt
ttaaagaaaaggaaaaattatataaatttcCTTGCTATTTCTTTTGTATA
TGATTATCTCCTACTGTACATATATGATATacaattttttgaatatattt
aaaatgaaatacaAGTGATGTAAGATAATATCCAACAATCAGAAAATATA
ctttgaaaaatgataaaaaa Run BLAST on NCBI protein sequence of TCONS_00021295-protein >TCONS_00021295-protein ID=TCONS_00021295-protein|Name=TCONS_00021295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MATEDLQRKRGQLQRQSTIKENIANEHLIKLEELCDKLNTDYLQGMTTKA
AKKGLKNYGYNIYSKPKTQTGSLTRLFQKEQTRSMVDSSWTKRDWNRVFN
SRSKEEYNVVRNGTHELVQRKDIVPGDLVLLQPKQIVPADMRVISYEGEL
VVDNRIITGNTAELKSISATSNDFLLSQNMIFGCTEILSGSCEAIVIKTG
NETVFGHLTQFATKVKLARRHDSMSLSSTSSGSSNSIGPSTSRDFEDNSS
QSSNSTPPSPRFT Run BLAST on NCBI transcript from alignment at sc0000382:203903..206362+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021295 ID=TCONS_00021295|Name=TCONS_00021295|organism=Clytia hemisphaerica|type=transcript|length=2460bp|location=Sequence derived from alignment at sc0000382:203903..206362+ (Clytia hemisphaerica)
CGCTAACATATATGGCAATGAAAAAATAGTGTCATGAAAATGGCATCACG
GAATAATACGGATGAgtttaagaaaaattatcatcaagaaaaaaaaaggt
aGTAGTAAAATACGTTTCATTGATATTTGAAATTACTCAATGAAAAGCGA
ATGATAAAAGtttagtacacgtttttttataagaacaagaagCTTCGAtg
tccaaaatattaagaacaatttaagaacattttaaggctttctggactat
aaaatactcacaaaatggtgagaataagaaaattttgaggcttaaaacat
aaagttaagaacacctgaaggcttcaaaaatttaggaagtccttataaaa
aacgtgtacaatacataaaaaagctattaaaatacCAAAGCAGTAATGCA
GTGATAAATTGCTGGAATTCAATTTTATAACTTTAAAGAGCAGCGCGCGC
GTCTCCTAGGGGACTGGGTACTAGGTTTACGTAAAGGGATATTATAATGA
AATCAGAATCTATTGATTGATGATAATCTTTTTGAGATTGACAGcttcat
ttttataaaagaatgttttaatGGTTTTTAAATTTCAGTTGACGTTGGAA
CGTGAAGGAGTGtacatcaaaattaaaatagacgcgaaaaaaaaactttt
tccaaaaacaaaacacgaaatatttgaatattttttgtttattttctcaa
CGACTTCAAAAACCAAGTTGGATCTCATCAATCATTTCAACAATCGACAT
ATACTTTATACCAAGATGGCTACAGAAGATTTGCAAAGAAAACGAGGTCA
ACTTCAACGTCAGTCCACAATCAAGGAAAACATTGCTAATGAACATTTAA
TCAAACTGGAAGAACTCTGCGATAAACTGAATACAGATTACCTACAAGGA
ATGACAACAAAAGCAGCTAAAAAAGGACTTAAGAATTACGGATACAACAT
TTACTCCAAACCAAAAACACAAACTGGATCACTGACACGGTTATTTCAGA
AAGAGCAAACTCGAAGCATGGTTGATAGTTCATGGACTAAGAGAGACTGG
AACCGGGTTTTTAATTCGCGCTCCAAAGAGGAATACAACGTTGTACGGAA
CGGGACGCATGAACTTGTCCAGCGGAAAGATATAGTACCTGGGGATTTAG
TCTTATTACAACCAAAACAAATTGTACCGGCAGATATGAGAGTGATAAGT
TATGAAGGAGAACTTGTAGTCGATAATCGTATTATAACTGGAAATACTGC
AGAACTAAAATCAATCAGTGCTACTTCAAATGACTTTTTACTATCACAGA
ATATGATTTTTGGATGTACTGAAATTCTGTCCGGTAGTTGTGAAGCTATT
GTGATTAAAACTGGAAATGAGACTGTTTTCGGACACTTGACACAGTTTGC
GACTAAAGTTAAACTGGCACGACGTCATGATAGTATGTCATTATCGTCTA
CATCATCAGGATCAAGCAATTCTATTGGTCCATCTACGTCACGTGATTTT
GAAGATAATAGCAGTCAAAGTTCCAATTCTACACCACCATCACCTAGATT
TACTTAAATTTCATGACCTCTTTATAGATATTTTATCTTACGGTCTTTGC
TATAATATCTTCATAAGTTTTTCAGAAACCAAACACAGAAAAAACTGAGG
GGTATAAAGATTAAAGGTCTTGGATAGAAAAGTTTTGAACAATAAAGAGC
TTGTCTTGAATAATATAAACGGGCCTTAGTTCTGAAAATCTTAAAACAGG
TCTTGAAAAAACTTAGGCCAAAATTGACGTCAAGAAATTATAGGATCAAC
AATGACGTTTTTAGGCCAATTTTTTCTTCCCGAAAGTTCTTTCCCTTTAA
ACTCAAGCCAAAAGCCTATTAGACATCATGCCATGTTTTTTTACATTGTT
TGCTATATCGATTAGTGAATTTAATTAATCACTGTACTGAGATAAAAAAT
GTCTTAGTAAAACTACTCAGTAAAATCACACGCTCTTTTAGGATTAATCG
CATTACAGTTTCCCTCTTTCGTAAACACTAAAGAGATAATGAAAATCAAT
TATCTCTTTAAGGATAAGGGAAAACTTGTTAGCGATGACTTTTACTCATA
AGCGACTTTATCATTAAGAATTCAAGCATTATATAAAAATTAACGTTATT
ATATATTATGAAGAGATATAATGAAAAGATGTTATGAAAATgtaatataa
aatattttagaattagATCATGCGTACTTGAAAACCGTGGGAACCATGGA
TTAAACGcgttgaataactttttatgacatcaaatattttttaaagaaaa
ggaaaaattatataaatttcCTTGCTATTTCTTTTGTATATGATTATCTC
CTACTGTACATATATGATATacaattttttgaatatatttaaaatgaaat
acaAGTGATGTAAGATAATATCCAACAATCAGAAAATATActttgaaaaa
tgataaaaaa Coding sequence (CDS) from alignment at sc0000382:203903..206362+ >TCONS_00021295 ID=TCONS_00021295|Name=TCONS_00021295|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000382:203903..206362+ (Clytia hemisphaerica)
ATGGCTACAGAAGATTTGCAAAGAAAACGAGGTCAACTTCAACGTCAGTC
CACAATCAAGGAAAACATTGCTAATGAACATTTAATCAAACTGGAAGAAC
TCTGCGATAAACTGAATACAGATTACCTACAAGGAATGACAACAAAAGCA
GCTAAAAAAGGACTTAAGAATTACGGATACAACATTTACTCCAAACCAAA
AACACAAACTGGATCACTGACACGGTTATTTCAGAAAGAGCAAACTCGAA
GCATGGTTGATAGTTCATGGACTAAGAGAGACTGGAACCGGGTTTTTAAT
TCGCGCTCCAAAGAGGAATACAACGTTGTACGGAACGGGACGCATGAACT
TGTCCAGCGGAAAGATATAGTACCTGGGGATTTAGTCTTATTACAACCAA
AACAAATTGTACCGGCAGATATGAGAGTGATAAGTTATGAAGGAGAACTT
GTAGTCGATAATCGTATTATAACTGGAAATACTGCAGAACTAAAATCAAT
CAGTGCTACTTCAAATGACTTTTTACTATCACAGAATATGATTTTTGGAT
GTACTGAAATTCTGTCCGGTAGTTGTGAAGCTATTGTGATTAAAACTGGA
AATGAGACTGTTTTCGGACACTTGACACAGTTTGCGACTAAAGTTAAACT
GGCACGACGTCATGATAGTATGTCATTATCGTCTACATCATCAGGATCAA
GCAATTCTATTGGTCCATCTACGTCACGTGATTTTGAAGATAATAGCAGT
CAAAGTTCCAATTCTACACCACCATCACCTAGATTTACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021295-exon-sc0000382-1491911889:203903..204000 | TCONS_00021295-exon-sc0000382-1491911889:203903..204000 | Clytia hemisphaerica | exon |
| TCONS_00021295-exon-sc0000382-1510915933:203903..204000 | TCONS_00021295-exon-sc0000382-1510915933:203903..204000 | Clytia hemisphaerica | exon |
| TCONS_00021295-exon-sc0000382-1575043694:203903..204000 | TCONS_00021295-exon-sc0000382-1575043694:203903..204000 | Clytia hemisphaerica | exon |
| TCONS_00021295-exon-sc0000382-1491911889:204491..206362 | TCONS_00021295-exon-sc0000382-1491911889:204491..206362 | Clytia hemisphaerica | exon |
| TCONS_00021295-exon-sc0000382-1510915933:204491..206362 | TCONS_00021295-exon-sc0000382-1510915933:204491..206362 | Clytia hemisphaerica | exon |
| TCONS_00021295-exon-sc0000382-1575043694:204491..206362 | TCONS_00021295-exon-sc0000382-1575043694:204491..206362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000382 | supercontig | sc0000382:203903..206362 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR004014 | ATPase_P-typ_cation-transptr_N |
| IPR008250 | ATPase_P-typ_transduc_dom_A |
| IPR023298 | ATPase_P-typ_TM_dom |
Blast
The following BLAST results are available for this feature:
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