|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021301 ID=TCONS_00021301|Name=TCONS_00021301|organism=Clytia hemisphaerica|type=transcript|length=1555bpRun BLAST on NCBI protein sequence of TCONS_00021301-protein >TCONS_00021301-protein ID=TCONS_00021301-protein|Name=TCONS_00021301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp MPVPAEVAESSSDQCESTSRMKTRKKQATISSLFQKSSKRKKVNKTEDAERun BLAST on NCBI transcript from alignment at sc0000382:106278..125268- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021301 ID=TCONS_00021301|Name=TCONS_00021301|organism=Clytia hemisphaerica|type=transcript|length=18991bp|location=Sequence derived from alignment at sc0000382:106278..125268- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000382:106278..125268- >TCONS_00021301 ID=TCONS_00021301|Name=TCONS_00021301|organism=Clytia hemisphaerica|type=CDS|length=26838bp|location=Sequence derived from alignment at sc0000382:106278..125268- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021301 vs. Swiss-Prot (Human)
Match: DNMT1 (DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1 SV=2) HSP 1 Score: 416.001 bits (1068), Expect = 1.116e-129 Identity = 211/368 (57.34%), Postives = 267/368 (72.55%), Query Frame = 2
Query: 365 EKDSNKMETTINKK-GVERCKECRQVIDKDEIKMYEGDPEDAVEEFLMLCDPRLSLLSGDEQQFESYDERPQHKLTEFSVYDKCGHLAAFDTGLIEKNVELFFSGYVKPIYDETVDKEGGVCTKKMGPINEWWIAGFDGGENALIGFGTAFAEYVLVRPSEDYAPFMNAVSEKICMSKILIELILSDPDATYEELLNKLETTVPPE--NCSKLTEDSLLRHAQFLVEQVESYDSAAPEGD-DEPPLIASMCVRDLIKLAGVTLGKRRA---LRGIKVKEKKKALGPTFATTTPLVRYVFDTFFQDQLDV-----KGSAQRKRRCGVCDVCQQPDCGNCRACKDMVKFGGTGRAKQCCINRRCPNMAVQ 1432
EK + +T +N K +C +C Q +D ++K Y P DAV+E ML + +LS+ +E FESY+ PQHKLT FSVY K GHL DTGLIEKN+ELFFSG KPIYD+ EGGV K +GPINEWWI GFDGGE ALIGF T+FAEY+L+ PS +YAP + EKI +SKI++E + S+ D+TYE+L+NK+ETTVPP N ++ TEDSLLRHAQF+VEQVESYD A GD DE P+ + C+RDLIKLAGVTLG+RRA + I+ ++K GPT ATTT LV +FDTFF +Q++ K +A ++RRCGVC+VCQQP+CG C+ACKDMVKFGG+GR+KQ C RRCPNMA++
Sbjct: 334 EKKMARAKTVMNSKTHPPKCIQCGQYLDDPDLK-YGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDEA---GDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMK 697 The following BLAST results are available for this feature:
BLAST of TCONS_00021301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.