TCONS_00021314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021314
Unique NameTCONS_00021314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021314 ID=TCONS_00021314|Name=TCONS_00021314|organism=Clytia hemisphaerica|type=transcript|length=387bp
CTTTGATCGAGAAGCCAAATAGTTTTTAGAGCGATCGGTAGATACGTGAT
AACATAAAGACACTGTCTATCCCAATCTCTATAATATGCGATTATTTCAG
AATATTTGCACCACTTCTCTTGCTTTGTGATTGTATTAAATTCTTCTTGT
GATTTGGCTAGTGTCATCGATATTTTTCGCATGGGATTAGCTGGTAGTAA
AACAACGTAATCTATAACTTTTCCAACATTCAACACAAGGCATGTGTGAT
TAAGTAACGAAGACCAATTCTTTGGATAAATCACATTCTCATAACGGTTC
AATGCTTCCCTAAATATCTTGAGATAGCTACACTCATCTTCGCTCTTGTA
ACAATCATCGATAAATTTGAACCATTCACTGGCACCG
Run BLAST on NCBI

protein sequence of TCONS_00021314-protein

>TCONS_00021314-protein ID=TCONS_00021314-protein|Name=TCONS_00021314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
GASEWFKFIDDCYKSEDECSYLKIFREALNRYENVIYPKNWSSLLNHTCL
VLNVGKVIDYVVLLPANPMRKISMTLAKSQEEFNTITKQEKWCKYSEIIA
YYRDWDRQCLYVITYLPIALKTIWLLDQ
Run BLAST on NCBI

transcript from alignment at sc0000382:82443..82829

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021314 ID=TCONS_00021314|Name=TCONS_00021314|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at sc0000382:82443..82829 (Clytia hemisphaerica)
CGGTGCCAGTGAATGGTTCAAATTTATCGATGATTGTTACAAGAGCGAAG
ATGAGTGTAGCTATCTCAAGATATTTAGGGAAGCATTGAACCGTTATGAG
AATGTGATTTATCCAAAGAATTGGTCTTCGTTACTTAATCACACATGCCT
TGTGTTGAATGTTGGAAAAGTTATAGATTACGTTGTTTTACTACCAGCTA
ATCCCATGCGAAAAATATCGATGACACTAGCCAAATCACAAGAAGAATTT
AATACAATCACAAAGCAAGAGAAGTGGTGCAAATATTCTGAAATAATCGC
ATATTATAGAGATTGGGATAGACAGTGTCTTTATGTTATCACGTATCTAC
CGATCGCTCTAAAAACTATTTGGCTTCTCGATCAAAG

Coding sequence (CDS) from alignment at sc0000382:82443..82829

>TCONS_00021314 ID=TCONS_00021314|Name=TCONS_00021314|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000382:82443..82829 (Clytia hemisphaerica)
GGTGCCAGTGAATGGTTCAAATTTATCGATGATTGTTACAAGAGCGAAGA
TGAGTGTAGCTATCTCAAGATATTTAGGGAAGCATTGAACCGTTATGAGA
ATGTGATTTATCCAAAGAATTGGTCTTCGTTACTTAATCACACATGCCTT
GTGTTGAATGTTGGAAAAGTTATAGATTACGTTGTTTTACTACCAGCTAA
TCCCATGCGAAAAATATCGATGACACTAGCCAAATCACAAGAAGAATTTA
ATACAATCACAAAGCAAGAGAAGTGGTGCAAATATTCTGAAATAATCGCA
TATTATAGAGATTGGGATAGACAGTGTCTTTATGTTATCACGTATCTACC
GATCGCTCTAAAAACTATTTGGCTTCTCGATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011935XLOC_011935Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021314-proteinTCONS_00021314-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021314-exon-sc0000382-1491911889:82443..82829TCONS_00021314-exon-sc0000382-1491911889:82443..82829Clytia hemisphaericaexon
TCONS_00021314-exon-sc0000382-1510915933:82443..82829TCONS_00021314-exon-sc0000382-1510915933:82443..82829Clytia hemisphaericaexon
TCONS_00021314-exon-sc0000382-1575043694:82443..82829TCONS_00021314-exon-sc0000382-1575043694:82443..82829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000382supercontigsc0000382:82443..82829 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.199313	0.194362	0.225673	0.441571	0	0	0	0.71969	0.671829	1.04021	1.00965	0	3.71159	2.06493	1.924	3.88659	0.897742	4.9075	10.3818	9.53358	9.44266	8.45963	3.65646	4.57084	0.427987	0.954921	23.7769	20.1253	41.3685	45.3034
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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