TCONS_00021325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021325
Unique NameTCONS_00021325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1763

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021325 ID=TCONS_00021325|Name=TCONS_00021325|organism=Clytia hemisphaerica|type=transcript|length=1763bp
aaaaaaaatcacaatggACAGAGAGCTTGACGTCTTCAGCAACTACAGGA
GCATCACCAACAAAATTAAGAAACGATTCTTAAAGAAACCGAACTTTAAT
GAAGCGAGCGAACAATTTGCAACGCTGACACGCGTCTTGAAACACCAAGA
ATGTGCTCAGTATGCAGGTTTTTGTTGCTTGGCGAAAGCTCGCTGTGAAA
ATACTCTTGGGAATTGCGTGGCTGAAGCTGAAGCCCTACTGGAGGCTGCC
AGGTTATTCTTCCAAGCGGAGAAAGTGAACATCGACGCCAAGTGTGCCGC
GTTGGATGAACACTTACCTGAAGCTATTCATTGTTACAACCAAGCTGTCA
AAGGATACTCTAAAGAAGGCCGTCATGCTCAAGCATCAATCGTGGCATTA
GAGCTCGCTCAAAATCTGCTCAGTATCGGACGCGCGGACGAAGCACACAA
TCATTTTGTACGCGCGGCCGAAATTCAACGCAAGACAAGCATCATGGATT
CGTTATGCACGTTGCGAAAAGCGGCTTATTGTCAATTTTATTTGAACAAT
CTACCTGGTGCTTTAACTCATCTTTCCGAAGTAATGGAAACGATCTCATC
CATGGTGGCACAGGATGCGAACAGTTTAACATATACTCTGCAAAGTATTC
GGCAATCAGTagaaatcactttcgttttcatcaTGTTATTATTGAAATCT
TCACCCATGGAACTTAGTAATGAACATTCAAAAGTCATGGAAACTTATAC
CTGGGAAAACGAGGAAGAAAATAATCGAGTCTTACCAGAGGATTTGTTCT
TGCTGATCCAGTCTGTCGTCATGGCAACTAATGCTAAAGACGTTGATACT
TTAACTTACCTACAAGTTGAACTATATCCGCAACTGGATACAGTGCAGTG
TGAATTGTTTCAGAAAATTATACACGAAACGAATGAATAGTAATTGATAA
TCGGTAATTGGAAATTAATTGAGCATTTTGATAATACAATTTTCGGTTGA
AACAGCACTGGCAAGTGTACTGGCACTCAAAATTCCTTCGAAAAGGGGCT
AGGCTTTGCTTGCATTTACTTGGTGTTATTTTTCTCAGCATTTATTATTG
TTAATATGTGGAAACTGTGGAAATTGCTatatatagtagggggaatttgt
tcgttttttgagGTCActcgattgttttggtcaaagcacttgttatacat
ttttggagaGCTACGCTAGAAAgctttcagtacctaactcgagatattga
gcttaaAAAAGCgctaaaactggacaaaactgctgtttctggctgaaaaa
cactttatttaagggttaatatctcgggttatgtacagaaatcacctata
cttgcaatatatctctaatcttaattttttgagagctttccaaaaatata
caacagatctgcgttttctcaagctaaaattttcattaatttttgaccct
atgatttttgcgagaccgagaccgtcatatttgtccgaaaatcacaccaa
agtgtccgaaaaaaaattggaacctaagtaattttgattccccAACCCtt
tgctttccaaaaatgtaacaagtgctttgaccaaataatcgagcgatttt
acaaaataccCTCTACTAATATACTTCTACAACAACAATTCGTGTTTTAT
CGTAGTTTGATTGGTAGCACAAGCTCTTTGATCATAAGGGACTTTTTTTC
TTCGAGGTTTGAACTTTGTTTGGACTGGTTTTCCattaaaagatatttgt
gattaaGTATTCC
Run BLAST on NCBI

protein sequence of TCONS_00021325-protein

>TCONS_00021325-protein ID=TCONS_00021325-protein|Name=TCONS_00021325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
KKITMDRELDVFSNYRSITNKIKKRFLKKPNFNEASEQFATLTRVLKHQE
CAQYAGFCCLAKARCENTLGNCVAEAEALLEAARLFFQAEKVNIDAKCAA
LDEHLPEAIHCYNQAVKGYSKEGRHAQASIVALELAQNLLSIGRADEAHN
HFVRAAEIQRKTSIMDSLCTLRKAAYCQFYLNNLPGALTHLSEVMETISS
MVAQDANSLTYTLQSIRQSVEITFVFIMLLLKSSPMELSNEHSKVMETYT
WENEEENNRVLPEDLFLLIQSVVMATNAKDVDTLTYLQVELYPQLDTVQC
ELFQKIIHETNE
Run BLAST on NCBI

transcript from alignment at sc0000385:44408..46872+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021325 ID=TCONS_00021325|Name=TCONS_00021325|organism=Clytia hemisphaerica|type=transcript|length=2465bp|location=Sequence derived from alignment at sc0000385:44408..46872+ (Clytia hemisphaerica)
aaaaaaaatcacaatggACAGAGAGCTTGACGTCTTCAGCAACTACAGGA
GCATCACCAACAAAATTAAGAAACGATTCTTAAAGAAACCGAACTTTAAT
GAAGCGAGCGAACAATTTGCAACGCTGACACGCGTCTTGAAACACCAAGA
ATGTGCTCAGTATGCAGGTTTTTGTTGCTTGGCGAAAGCTCGCTGTGAAA
ATACTCTTGGGAATTGCGTGGCTGAAGCTGAAGCCCTACTGGAGGCTGCC
AGGTATGTTGTTCTTTGTTtacgaaatttcaattttatgctAGAACTTGA
TATGGTACGTAAATTAGTTGGATTCATATCCTACTTTTCTGCTTTCTTCG
GCTAAAGTAGCCTATATGTACTAAACGTCACAACCTTTTTTTCTACGCAG
TAACGGAATGGAAAATCCCGGTTTTTTGTGAGGTACTCGCTATGGCTAAA
GCCAAATTCTGTCAACTAAGAAACTTTCTGTTTatattcacaaaaataat
caCAGAAAAAACCCTTTAAATTCCAATGTCTCTCTACCTTTTTTGTTAAA
ACCTAGAAGGATTGTAATATTTCCCATCTTTCTTTGGACCAGGTTATTCT
TCCAAGCGGAGAAAGTGAACATCGACGCCAAGTGTGCCGCGTTGGATGAA
CACTTACCTGAAGCTATTCATTGTTACAACCAAGCTGTCAAAGGATACTC
TAAAGAAGGTAATGTTCATTCTGTGATTTACTGGGCAACATTTCAATTTT
ATACGTAAGAGGTATTATAAGCTGTTCGATATTTACTTGGAATAGACTGG
CGTGAGGCTTACATAAGTCTTTTCCAAAAAGTATGTCAAGCATTGAGCTT
AAAGCCCTTAGGGATGAAGTGGAATCTTCAACCGTTCCCAAGCATGAAGC
CTCTACGGTGCACTTGAATCTGAATCTAAGCTTTCTCACaccattttttt
tctaaatctaaCATAGATGTTCTTATGTTCCTCACCAGCCCTTCGGGATT
TATCCTTAATGATTTCAACTAAACCGCATTGATTAACAGATTTCATATAC
ATTTTGTCTTTGACTTTCAGGCCGTCATGCTCAAGCATCAATCGTGGCAT
TAGAGCTCGCTCAAAATCTGCTCAGTATCGGACGCGCGGACGAAGCACAC
AATCATTTTGTACGCGCGGCCGAAATTCAACGCAAGACAAGCATCATGGA
TTCGTTATGCACGTTGCGAAAAGCGGCTTATTGTCAATTTTATTTGAACA
ATCTACCTGGTGCTTTAACTCATCTTTCCGAAGTAATGGAAACGATCTCA
TCCATGGTGGCACAGGATGCGAACAGTTTAACATATACTCTGCAAAGTAT
TCGGCAATCAGTagaaatcactttcgttttcatcaTGTTATTATTGAAAT
CTTCACCCATGGAACTTAGTAATGAACATTCAAAAGTCATGGAAACTTAT
ACCTGGGAAAACGAGGAAGAAAATAATCGAGTCTTACCAGAGGATTTGTT
CTTGCTGATCCAGTCTGTCGTCATGGCAACTAATGCTAAAGACGTTGATA
CTTTAACTTACCTACAAGTTGAACTATATCCGCAACTGGATACAGTGCAG
TGTGAATTGTTTCAGAAAATTATACACGAAACGAATGAATAGTAATTGAT
AATCGGTAATTGGAAATTAATTGAGCATTTTGATAATACAATTTTCGGTT
GAAACAGCACTGGCAAGTGTACTGGCACTCAAAATTCCTTCGAAAAGGGG
CTAGGCTTTGCTTGCATTTACTTGGTGTTATTTTTCTCAGCATTTATTAT
TGTTAATATGTGGAAACTGTGGAAATTGCTatatatagtagggggaattt
gttcgttttttgagGTCActcgattgttttggtcaaagcacttgttatac
atttttggagaGCTACGCTAGAAAgctttcagtacctaactcgagatatt
gagcttaaAAAAGCgctaaaactggacaaaactgctgtttctggctgaaa
aacactttatttaagggttaatatctcgggttatgtacagaaatcaccta
tacttgcaatatatctctaatcttaattttttgagagctttccaaaaata
tacaacagatctgcgttttctcaagctaaaattttcattaatttttgacc
ctatgatttttgcgagaccgagaccgtcatatttgtccgaaaatcacacc
aaagtgtccgaaaaaaaattggaacctaagtaattttgattccccAACCC
tttgctttccaaaaatgtaacaagtgctttgaccaaataatcgagcgatt
ttacaaaataccCTCTACTAATATACTTCTACAACAACAATTCGTGTTTT
ATCGTAGTTTGATTGGTAGCACAAGCTCTTTGATCATAAGGGACTTTTTT
TCTTCGAGGTTTGAACTTTGTTTGGACTGGTTTTCCattaaaagatattt
gtgattaaGTATTCC

Coding sequence (CDS) from alignment at sc0000385:44408..46872+

>TCONS_00021325 ID=TCONS_00021325|Name=TCONS_00021325|organism=Clytia hemisphaerica|type=CDS|length=2817bp|location=Sequence derived from alignment at sc0000385:44408..46872+ (Clytia hemisphaerica)
aaaaaaatcacaatggACAGAGAGCTTGACGTCTTCAGCAACTACAGGAG
CATCACCAACAAAATTAAGAAACGATTCTTAAAGAAACCGAACTTTAATG
AAGCGAGCGAACAATTTGCAACGCTGACACGCGTCTTGAAACACCAAGAA
TGTGCTCAGTATGCAGGTTTTTGTTGCTTGGCGAAAGCTCGCTGTGAAAA
TACTCTTGGGAATTGCGTGGCTGAAGCTGAAGCCCTACTGGAGGCTGCCA
GGTTATTCTTCCAAGCGGAGAAAGTGAACATCGACGCCAAGTGTGCCGCG
TTGGATGAACACTTACCTGAAGCTATTCATTGTTACAACCAAGCTGTCAA
AGGATACTCTAAAGAAGGCCGTCATGCTCAAGCATCAATCGTGGCATTAG
AGCTCGCTCAAAATCTGCTCAGTATCGGACGCGCGGACGAAGCACACAAT
CATTTTGTACGCGCGGCCGAAATTCAACGCAAGACAAGCATCATGGATTC
GTTATGCACGTTGCGAAAAGCGGCTTATTGTCAATTTTATTTGAACAATC
TACCTGGTGCTTTAACTCATCTTTCCGAAGTAATGGAAACGATCTCATCC
ATGGTGGCACAGGATGCGAACAGTTTAACATATACTCTGCAAAGTATTCG
GCAATCAGTagaaatcactttcgttttcatcaTGTTATTATTGAAATCTT
CACCCATGGAACTTAGTAATGAACATTCAAAAGTCATGGAAACTTATACC
TGGGAAAACGAGGAAGAAAATAATCGAGTCTTACCAGAGGATTTGTTCTT
GCTGATCCAGTCTGTCGTCATGGCAACTAATGCTAAAGACGTTGATACTT
TAACTTACCTACAAGTTGAACTATATCCGCAACTGGATACAGTGCAGTGT
GAATTGTTTCAGAAAATTATACACGAAACGAATGAATAGaaaaaaatcac
aatggACAGAGAGCTTGACGTCTTCAGCAACTACAGGAGCATCACCAACA
AAATTAAGAAACGATTCTTAAAGAAACCGAACTTTAATGAAGCGAGCGAA
CAATTTGCAACGCTGACACGCGTCTTGAAACACCAAGAATGTGCTCAGTA
TGCAGGTTTTTGTTGCTTGGCGAAAGCTCGCTGTGAAAATACTCTTGGGA
ATTGCGTGGCTGAAGCTGAAGCCCTACTGGAGGCTGCCAGGTTATTCTTC
CAAGCGGAGAAAGTGAACATCGACGCCAAGTGTGCCGCGTTGGATGAACA
CTTACCTGAAGCTATTCATTGTTACAACCAAGCTGTCAAAGGATACTCTA
AAGAAGGCCGTCATGCTCAAGCATCAATCGTGGCATTAGAGCTCGCTCAA
AATCTGCTCAGTATCGGACGCGCGGACGAAGCACACAATCATTTTGTACG
CGCGGCCGAAATTCAACGCAAGACAAGCATCATGGATTCGTTATGCACGT
TGCGAAAAGCGGCTTATTGTCAATTTTATTTGAACAATCTACCTGGTGCT
TTAACTCATCTTTCCGAAGTAATGGAAACGATCTCATCCATGGTGGCACA
GGATGCGAACAGTTTAACATATACTCTGCAAAGTATTCGGCAATCAGTag
aaatcactttcgttttcatcaTGTTATTATTGAAATCTTCACCCATGGAA
CTTAGTAATGAACATTCAAAAGTCATGGAAACTTATACCTGGGAAAACGA
GGAAGAAAATAATCGAGTCTTACCAGAGGATTTGTTCTTGCTGATCCAGT
CTGTCGTCATGGCAACTAATGCTAAAGACGTTGATACTTTAACTTACCTA
CAAGTTGAACTATATCCGCAACTGGATACAGTGCAGTGTGAATTGTTTCA
GAAAATTATACACGAAACGAATGAATAGaaaaaaatcacaatggACAGAG
AGCTTGACGTCTTCAGCAACTACAGGAGCATCACCAACAAAATTAAGAAA
CGATTCTTAAAGAAACCGAACTTTAATGAAGCGAGCGAACAATTTGCAAC
GCTGACACGCGTCTTGAAACACCAAGAATGTGCTCAGTATGCAGGTTTTT
GTTGCTTGGCGAAAGCTCGCTGTGAAAATACTCTTGGGAATTGCGTGGCT
GAAGCTGAAGCCCTACTGGAGGCTGCCAGGTTATTCTTCCAAGCGGAGAA
AGTGAACATCGACGCCAAGTGTGCCGCGTTGGATGAACACTTACCTGAAG
CTATTCATTGTTACAACCAAGCTGTCAAAGGATACTCTAAAGAAGGCCGT
CATGCTCAAGCATCAATCGTGGCATTAGAGCTCGCTCAAAATCTGCTCAG
TATCGGACGCGCGGACGAAGCACACAATCATTTTGTACGCGCGGCCGAAA
TTCAACGCAAGACAAGCATCATGGATTCGTTATGCACGTTGCGAAAAGCG
GCTTATTGTCAATTTTATTTGAACAATCTACCTGGTGCTTTAACTCATCT
TTCCGAAGTAATGGAAACGATCTCATCCATGGTGGCACAGGATGCGAACA
GTTTAACATATACTCTGCAAAGTATTCGGCAATCAGTagaaatcactttc
gttttcatcaTGTTATTATTGAAATCTTCACCCATGGAACTTAGTAATGA
ACATTCAAAAGTCATGGAAACTTATACCTGGGAAAACGAGGAAGAAAATA
ATCGAGTCTTACCAGAGGATTTGTTCTTGCTGATCCAGTCTGTCGTCATG
GCAACTAATGCTAAAGACGTTGATACTTTAACTTACCTACAAGTTGAACT
ATATCCGCAACTGGATACAGTGCAGTGTGAATTGTTTCAGAAAATTATAC
ACGAAACGAATGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011946XLOC_011946Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021325-proteinTCONS_00021325-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021325-exon-sc0000385-1491911889:44408..44659TCONS_00021325-exon-sc0000385-1491911889:44408..44659Clytia hemisphaericaexon
TCONS_00021325-exon-sc0000385-1510915933:44408..44659TCONS_00021325-exon-sc0000385-1510915933:44408..44659Clytia hemisphaericaexon
TCONS_00021325-exon-sc0000385-1575043694:44408..44659TCONS_00021325-exon-sc0000385-1575043694:44408..44659Clytia hemisphaericaexon
TCONS_00021325-exon-sc0000385-1491911889:45000..45115TCONS_00021325-exon-sc0000385-1491911889:45000..45115Clytia hemisphaericaexon
TCONS_00021325-exon-sc0000385-1510915933:45000..45115TCONS_00021325-exon-sc0000385-1510915933:45000..45115Clytia hemisphaericaexon
TCONS_00021325-exon-sc0000385-1575043694:45000..45115TCONS_00021325-exon-sc0000385-1575043694:45000..45115Clytia hemisphaericaexon
TCONS_00021325-exon-sc0000385-1491911889:45478..46872TCONS_00021325-exon-sc0000385-1491911889:45478..46872Clytia hemisphaericaexon
TCONS_00021325-exon-sc0000385-1510915933:45478..46872TCONS_00021325-exon-sc0000385-1510915933:45478..46872Clytia hemisphaericaexon
TCONS_00021325-exon-sc0000385-1575043694:45478..46872TCONS_00021325-exon-sc0000385-1575043694:45478..46872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:44408..46872 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.0363	18.6779	21.3863	22.9756	8.50196	5.66026	8.82086	9.97983	7.61946	7.1052	6.48298	6.66726	5.72468	6.06914	6.13492	6.17179	7.82527	6.72608	5.24659	6.95763	5.81888	6.20138	17.256	15.4258	6.55719	7.43912	8.15438	5.6185	13.8547	14.2338
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00021325 vs. Swiss-Prot (Human)
Match: F8I2 (Factor VIII intron 22 protein OS=Homo sapiens GN=F8A1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.349e-32
Identity = 121/346 (34.97%), Postives = 178/346 (51.45%), Query Frame = 2 
Query:   29 DVFSNYRSITNKIKKRFLKKPNFNEASEQFATLTRVLKHQECAQYAGFCCLAKARCENTLGNCVXXXXXXXXXXXXFFQAEKVNIDAK-----CAALDEHLPEAIHCYNQAVKGYSKEGRHAQASIVALELAQNLLSIGRADEAHNHFVRAAEIQRKTSIMDSLCTLRKAAYCQFYLNNLPGALT-----------HLSEVMETI-------------------------SSMVAQDANSLTYTLQSIRQSVEITFVFIMLLLKSSPMELSNEHSKVMETYTWXX----XXXXXRVLPEDLFLLIQSVVMATNAKDVDTLTYLQVELYPQLDTVQCELFQKIIHET 931
            D  + YR ++NK+KKRFL+KPN  EA EQF  L R L+ QEC  YA +C LA ARC+  L +   EA AL EAARLF + E+   DA+      AA  E L  A      AV+ + + G+ A A+ + LELA  L  +G+   A  HF RAA++Q     + +L  L +AA CQ    +  GAL            H S  ++++                         +S  A  + +       +    E++ V ++LLL+  P +L  EH++ +E Y+WE      +E++  LPE+LFLL+QS+VMAT+ KD + +  LQVE++P L   Q  L   ++ ET
Sbjct:   21 DFLARYRLVSNKLKKRFLRKPNVAEAGEQFGQLGRELRAQECLPYAAWCQLAVARCQQALFHGPGEALALTEAARLFLRQER---DARQRLVCPAAYGEPLQAAASALGAAVRLHLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALGEAASCQLLARDYTGALAVFTRMQRLAREHGSHPVQSLPPPPPPAPQPGPGATPALPAALLPPNSGSAAPSPAALGAFSDVLVRCEVSRVLLLLLLQPPPAKLLPEHAQTLEKYSWEAFDSHGQESSGQLPEELFLLLQSLVMATHEKDTEAIKSLQVEMWPLLTAEQNHLLHLVLQET 363
The following BLAST results are available for this feature:
BLAST of TCONS_00021325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
F8I24.349e-3234.97Factor VIII intron 22 protein OS=Homo sapiens GN=F... [more]
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