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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021342 ID=TCONS_00021342|Name=TCONS_00021342|organism=Clytia hemisphaerica|type=transcript|length=2709bpRun BLAST on NCBI protein sequence of TCONS_00021342-protein >TCONS_00021342-protein ID=TCONS_00021342-protein|Name=TCONS_00021342-protein|organism=Clytia hemisphaerica|type=polypeptide|length=518bp MLSKASSSLGKSLLSLSRSNNLLPRVCTASFHYGNALQQKRAALLDIDNIRun BLAST on NCBI transcript from alignment at sc0000385:259450..269746+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021342 ID=TCONS_00021342|Name=TCONS_00021342|organism=Clytia hemisphaerica|type=transcript|length=10297bp|location=Sequence derived from alignment at sc0000385:259450..269746+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000385:259450..269746+ >TCONS_00021342 ID=TCONS_00021342|Name=TCONS_00021342|organism=Clytia hemisphaerica|type=CDS|length=14013bp|location=Sequence derived from alignment at sc0000385:259450..269746+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021342 vs. Swiss-Prot (Human)
Match: ALAT2 (Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1) HSP 1 Score: 523.857 bits (1348), Expect = 8.288e-176 Identity = 261/484 (53.93%), Postives = 337/484 (69.63%), Query Frame = 1
Query: 349 QQKRAALLDIDNINPHVKAVEYAVRGPIVIRASEIEQELANEGQGDKQFSQVIKANIGDCHAMGQQPITFIRQVVAACTYPPLMEQNVFPDDVNARANEILSTIRG-STGCYSDSVGMAIVRKHIAEYIEKRDG-YPCNIKDVIVTNGASSAVKLILELFISD--KETSGAMIPIPQYPLYSATIAEYGMGLIGYYLNEENKWGMDIEELQRSLNEARKTCTPRVLCVINPGNPTGQVLPYDNIRDIIRFAMEENLFLLADEVYQDNIYGEGCEFNSFKKVLMDMGEE-AEGFQLASFHSCSKGFMGECGLRGGYLEVINLDDEVHYQLNKLQSANLGSNVTGQIVMDCIVNPPKEGDTSYELFQKEKNDVLESLKTRAKLVHKRLNSIEGITCNEVMGAMYAFPRIHLPPKAVAKAKSLGQEPDFFYCLQLLEETGLCVVPGSGFVQKPDTYHFRMTILPPENEIETFLELLEGFHNRFLAEY 1785
+ +R +L ++++NP VKAVEYAVRGPIV++A EIE EL + K F++VI+ANIGD AMGQQPITF+RQV+A CTYP L++ FP+D RA IL G S G YS S G+ +R+ +A YI +RDG P + ++ +T GAS + IL++ +S K +G MIPIPQYPLYSA I+E + YYL+EEN W +++ EL+R++ EA+ C P+VLC+INPGNPTGQV I D+I FA EE LFLLADEVYQDN+Y C F+SFKKVL +MG E + +LASFHS SKG+MGECG RGGY+EVINL E+ QL KL S L V+GQ MD +VNPP G+ S+E F +EK VL +L +AKL N + GI CN + GAMYAFPRI +P KAV A++ PD FYC++LLEETG+CVVPGSGF Q+ TYHFRMTILPP +++T L+ ++ FH FL +Y
Sbjct: 41 RSRRERILTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGIK--KPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINFLEKY 522 The following BLAST results are available for this feature:
BLAST of TCONS_00021342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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