TCONS_00021345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021345
Unique NameTCONS_00021345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length756

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021345 ID=TCONS_00021345|Name=TCONS_00021345|organism=Clytia hemisphaerica|type=transcript|length=756bp
cattaatgcaatcaaaaagtggattttcacgttcacCAATTAACCAGAAG
CTCCATCGAATTCAGGAAGTTGCGACAAAGGAAGGAACAGCAGGAGCTTC
GATTCCACCATTAAACGCGAACTATGGTGTAGAAAAAGCTTTCGGTAACG
CCGATTGGGCTTACGGCTACCGTTCAAACGCGAAGTACGGAAATTTGCCG
GCTATGGTTTGGTATCATTTTAGAACTGAATTCGAACCAGCTGAAGTAAC
TTTCAGATCAATGGGCGTGGCAGCGGAAACAGCAAATCAATATCAACTTG
TGGGAACAAATGATGAACATTGTAATCAATATTCCGCTTGGACTATCTTG
TGTGAAAATCTTACAAACATACCAGTCAAAACACGatattcaagtcaAAG
ATGTGAGGTCGGTCAGTTCCACAATCGAAGATACAAATGTGTCGGTATTC
GCATTTTGGGAACCTCTTATGACAACACTCCATATGTTGGATTGGGCAAC
ATTCGATTTTTCAAGCGCGTTTAAATATTGATGGGAATTAAATCTTTGTT
AAAgagtattttaatattttgttttccTCATTTGTTAGATCTATTACGTT
ATTGCTCTTTTAAGGCCTTGTTATGCCAATTTGTAAAATTATTATCTTAG
TAATTCTTAGGCGTAATAAGGACGGACGATGCTTTAtttatgataaattt
ttaaaCTTAGTACGAATGATTATTCTCTGAATATatattaaaaaaggaaa
aatcgt
Run BLAST on NCBI

protein sequence of TCONS_00021345-protein

>TCONS_00021345-protein ID=TCONS_00021345-protein|Name=TCONS_00021345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
LMQSKSGFSRSPINQKLHRIQEVATKEGTAGASIPPLNANYGVEKAFGNA
DWAYGYRSNAKYGNLPAMVWYHFRTEFEPAEVTFRSMGVAAETANQYQLV
GTNDEHCNQYSAWTILCENLTNIPVKTRYSSQRCEVGQFHNRRYKCVGIR
ILGTSYDNTPYVGLGNIRFFKRV
Run BLAST on NCBI

transcript from alignment at sc0000385:377394..380666+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021345 ID=TCONS_00021345|Name=TCONS_00021345|organism=Clytia hemisphaerica|type=transcript|length=3273bp|location=Sequence derived from alignment at sc0000385:377394..380666+ (Clytia hemisphaerica)
cattaatgcaatcaaaaagtggattttcacgttcacgcaagttttttcaa
ttcacgcattcacgcaaccgaaaatgccaaATCACGCATTCACGTAAACC
GCTTGGGGCCCTTTTAGGGTCTATGTATTGCCCAGcaacattcaaaacaa
aaggaatataaTTGGCTGCTTACTAActccgcaaaatttttgaagccttc
ggatgttcttaaactttttgagtttttaagcctaaaaatgttcttaacat
gtttttattttctccatttacAATGGGTAttcttgtccattttcctaaaa
aatcgggtgtttgCCGCAAAACATTAATACCTTATCACTCTATCTCAGTA
AatGCTCCTGAGCTATTTCAGTCAAAATTAAACCCAGTCTCTAAATTCAC
gacatcagtaaaatcaaaaatatgatGCAAATGGCTCTGATTACGAGATT
AACTTTCAATGCCTTCGACAGCCTAAGAGAAACCGTCAAAAtgctgttgt
ttttttttactcttttttaatgaaaaaattataACTCAAACTATGTCTTT
CAGCAATTAACCAGAAGCTCCATCGAATTCAGGAAGTTGCGACAAAGGAA
GGAACAGCAGGAGCTTCGATTCCACCATTAAACGCGAACTATGGTGTAGA
AAAAGCTTTCGGTAACGCCGATTGGGCTTACGGCTACCGTTCAAACGCGA
AGTACGGAAATTTGCCGGCTATGGTTTGGTATCATTTTAGAACTGAATTC
GAACCAGCTGAAGTAACTTTCAGATCAATGGGTAAGTTTTGATAAACATC
CTTTAATAAGGGATACATTTTGCCGTGTGTTGGTCTGTTTCGGTTAGAGC
AATTCTGTGTCTTTGTAGTACAAATTTTCTGGTACTAAATCATCGAAAAC
AGGTGCGTAGGAACTCtcctttgaaaaacaaaaaataccattGAATCGAA
GTGAATAAAAGTTTTGCAAACAACACAGAATGGTGTCTAACCGTAATAAA
CCGTGCTTCGCGTTTCTTTTTTATCGAAGAAAAGGTTGGTACATGAAGTT
GCAACTTTAGAAAACAAGCTTATTCTACCTCACACcttgttaaaaataaa
ataaaatgttacttAAGTACCAATGTTGAGTATACTAGACATTGGCTATA
TAGGAGGGAGAagccaaaaaatgcaaaaatttgacaaaaatccacttttt
taagattttgaccgatTTCTGACCATTTTTGACCCAAAAGCCTCCAAAat
tggccctgctttacttgattctgtcctctagAGAATTAATTTAGAGTTTT
TCTACTGGGCAcatttctatcattcaggcaggtccgcgcAGCTACCCAAT
gaactataaacgagcttctaacttcttctagatccggagatataagcctt
taaagtttgaactagcgattttcttttaaaaacttagaaaaaatgatcgt
ggtacttaaagggttagCCAATTAAAAAGCCACTTTATAATAATTTTACA
TCAATAAAGGCGTGGCAGCGGAAACAGCAAATCAATATCAACTTGTGGGA
ACAAATGATGAACATTGTAATCAATATTCCGCTTGGACTATCTTGTGTGA
AAATCTTACAAACATACCAGTCAAAACACGGTAAGCgatcccagctgaca
cacaacgttgtttcaacgttcatctaacgttatatggacgttgtgaatgt
tagataaacgtcgaaaaaacgttgtgtgtcagctggaaGTAGATTAGTAG
AGTGGGGTACCCAGTTGGCTTGAGTTTATACAGATTCTCGTTTATTCATA
TCGGCAGTATATTTTGTTGGGACTTCCTTTTCGCAGTCAAATAGTCACTA
CCGAAGACAGTACAAAACACTTATTTGATTTATTCCGTTTGatttagttt
tttatttataacggttatttataatcaaatcactttaattttacCCAGTT
GGCGCTATAGTCTTACCCAGTTTGCATGATAAGATTCAAATGGAAATATT
GCACTCAAAATTGGAGTAAATGCGACAATTATAGTAGATGTATAGAAGCA
TGGTAAAATTCAGCATATCCTCCATATATTTGCGAAATGCAGGGTTgaaa
tcactgacctttatataaccctggaccaggcttctcaatcccagccaagc
aaaatctttgatcggagttttttgaaaattagtaccctaatggcggcact
actcgatagcggtttaaatgcatcgagaacgctaggtctacttttcctca
aattcttttgatgatgtagcggcgttagacgttaatttttaacactgcaa
tggcttctgctcgggtaccaattccaaaaaaactccaatcaaagatggca
gatattgcttggtccatggttatataaaggtcagtggttgaaATAGAGGT
TACGTCATTTTTTGCAACTTTGTCTTTTTCGTCAGTTCATTCTGACATCA
ANcagggttatataaaggtcagtggttgaaATAGAGGTTACGTCATTTTT
TGCAACTTTGAAAACACTACAATGACGTCCATATAACGATAAAtgcgtgc
cagctgggaacCGGTTTTTTGAGCATTTGAAAGTGAATCAAATGATTTTG
AGCTACCTGCAGTTCTGACCCGGAAAGTCACAGGCGGCGCGGATTTACCG
TCGTTCTCACGCAATAAggatacaaaaaaaacaatctaGAGCTTTTTCTG
TCGCAGTAAAATACCAATACATGgctgttttgtaattttgagaGAGTCTT
AAAAAGCACAGTTTAGAATCCCTATCATGGGATTAAATTATTTTACAGTA
TTCTATTCAAGAACGTGGGTGTTTGAAGTCAACCAGTAATAAGTGTAATG
CACTTTAATTTTGAAGTCAACCAGTAATAAGTGTAATGCACTttaatttt
agatattcaagtcaAAGATGTGAGGTCGGTCAGTTCCACAATCGAAGATA
CAAATGTGTCGGTATTCGCATTTTGGGAACCTCTTATGACAACACTCCAT
ATGTTGGATTGGGCAACATTCGATTTTTCAAGCGCGTTTAAATATTGATG
GGAATTAAATCTTTGTTAAAgagtattttaatattttgttttccTCATTT
GTTAGATCTATTACGTTATTGCTCTTTTAAGGCCTTGTTATGCCAATTTG
TAAAATTATTATCTTAGTAATTCTTAGGCGTAATAAGGACGGACGATGCT
TTAtttatgataaatttttaaaCTTAGTACGAATGATTATTCTCTGAATA
Tatattaaaaaaggaaaaatcgt

Coding sequence (CDS) from alignment at sc0000385:377394..380666+

>TCONS_00021345 ID=TCONS_00021345|Name=TCONS_00021345|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0000385:377394..380666+ (Clytia hemisphaerica)
ttaatgcaatcaaaaagtggattttcacgttcacCAATTAACCAGAAGCT
CCATCGAATTCAGGAAGTTGCGACAAAGGAAGGAACAGCAGGAGCTTCGA
TTCCACCATTAAACGCGAACTATGGTGTAGAAAAAGCTTTCGGTAACGCC
GATTGGGCTTACGGCTACCGTTCAAACGCGAAGTACGGAAATTTGCCGGC
TATGGTTTGGTATCATTTTAGAACTGAATTCGAACCAGCTGAAGTAACTT
TCAGATCAATGGGCGTGGCAGCGGAAACAGCAAATCAATATCAACTTGTG
GGAACAAATGATGAACATTGTAATCAATATTCCGCTTGGACTATCTTGTG
TGAAAATCTTACAAACATACCAGTCAAAACACGatattcaagtcaAAGAT
GTGAGGTCGGTCAGTTCCACAATCGAAGATACAAATGTGTCGGTATTCGC
ATTTTGGGAACCTCTTATGACAACACTCCATATGTTGGATTGGGCAACAT
TCGATTTTTCAAGCGCGTTTAAttaatgcaatcaaaaagtggattttcac
gttcacCAATTAACCAGAAGCTCCATCGAATTCAGGAAGTTGCGACAAAG
GAAGGAACAGCAGGAGCTTCGATTCCACCATTAAACGCGAACTATGGTGT
AGAAAAAGCTTTCGGTAACGCCGATTGGGCTTACGGCTACCGTTCAAACG
CGAAGTACGGAAATTTGCCGGCTATGGTTTGGTATCATTTTAGAACTGAA
TTCGAACCAGCTGAAGTAACTTTCAGATCAATGGGCGTGGCAGCGGAAAC
AGCAAATCAATATCAACTTGTGGGAACAAATGATGAACATTGTAATCAAT
ATTCCGCTTGGACTATCTTGTGTGAAAATCTTACAAACATACCAGTCAAA
ACACGatattcaagtcaAAGATGTGAGGTCGGTCAGTTCCACAATCGAAG
ATACAAATGTGTCGGTATTCGCATTTTGGGAACCTCTTATGACAACACTC
CATATGTTGGATTGGGCAACATTCGATTTTTCAAGCGCGTTTAAttaatg
caatcaaaaagtggattttcacgttcacCAATTAACCAGAAGCTCCATCG
AATTCAGGAAGTTGCGACAAAGGAAGGAACAGCAGGAGCTTCGATTCCAC
CATTAAACGCGAACTATGGTGTAGAAAAAGCTTTCGGTAACGCCGATTGG
GCTTACGGCTACCGTTCAAACGCGAAGTACGGAAATTTGCCGGCTATGGT
TTGGTATCATTTTAGAACTGAATTCGAACCAGCTGAAGTAACTTTCAGAT
CAATGGGCGTGGCAGCGGAAACAGCAAATCAATATCAACTTGTGGGAACA
AATGATGAACATTGTAATCAATATTCCGCTTGGACTATCTTGTGTGAAAA
TCTTACAAACATACCAGTCAAAACACGatattcaagtcaAAGATGTGAGG
TCGGTCAGTTCCACAATCGAAGATACAAATGTGTCGGTATTCGCATTTTG
GGAACCTCTTATGACAACACTCCATATGTTGGATTGGGCAACATTCGATT
TTTCAAGCGCGTTTAAttaatgcaatcaaaaagtggattttcacgttcac
CAATTAACCAGAAGCTCCATCGAATTCAGGAAGTTGCGACAAAGGAAGGA
ACAGCAGGAGCTTCGATTCCACCATTAAACGCGAACTATGGTGTAGAAAA
AGCTTTCGGTAACGCCGATTGGGCTTACGGCTACCGTTCAAACGCGAAGT
ACGGAAATTTGCCGGCTATGGTTTGGTATCATTTTAGAACTGAATTCGAA
CCAGCTGAAGTAACTTTCAGATCAATGGGCGTGGCAGCGGAAACAGCAAA
TCAATATCAACTTGTGGGAACAAATGATGAACATTGTAATCAATATTCCG
CTTGGACTATCTTGTGTGAAAATCTTACAAACATACCAGTCAAAACACGa
tattcaagtcaAAGATGTGAGGTCGGTCAGTTCCACAATCGAAGATACAA
ATGTGTCGGTATTCGCATTTTGGGAACCTCTTATGACAACACTCCATATG
TTGGATTGGGCAACATTCGATTTTTCAAGCGCGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011956XLOC_011956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021345-exon-sc0000385-1491911889:377394..377429TCONS_00021345-exon-sc0000385-1491911889:377394..377429Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1510915933:377394..377429TCONS_00021345-exon-sc0000385-1510915933:377394..377429Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1575043694:377394..377429TCONS_00021345-exon-sc0000385-1575043694:377394..377429Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1491911889:377947..378174TCONS_00021345-exon-sc0000385-1491911889:377947..378174Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1510915933:377947..378174TCONS_00021345-exon-sc0000385-1510915933:377947..378174Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1575043694:377947..378174TCONS_00021345-exon-sc0000385-1575043694:377947..378174Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1491911889:378903..379023TCONS_00021345-exon-sc0000385-1491911889:378903..379023Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1510915933:378903..379023TCONS_00021345-exon-sc0000385-1510915933:378903..379023Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1575043694:378903..379023TCONS_00021345-exon-sc0000385-1575043694:378903..379023Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1491911889:380296..380666TCONS_00021345-exon-sc0000385-1491911889:380296..380666Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1510915933:380296..380666TCONS_00021345-exon-sc0000385-1510915933:380296..380666Clytia hemisphaericaexon
TCONS_00021345-exon-sc0000385-1575043694:380296..380666TCONS_00021345-exon-sc0000385-1575043694:380296..380666Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021345-proteinTCONS_00021345-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:377394..380666 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0648588	0	0.0734364	0.143692	0.349863	0.414699	9.75618	9.21168	250.649	62.9604	129.516	205.265	11.0858	8.46657	135.936	115.803	0.876406	2.49524	2.96469	1.01006	0.501673	0.275286	0.148732	0.0676093	0	0	0.355737	0.189826	0.0719882	0.146689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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