|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021349 ID=TCONS_00021349|Name=TCONS_00021349|organism=Clytia hemisphaerica|type=transcript|length=1482bp
AGgaacaataaaaaacaaattataaaaagacaaaaagtatTTGATCGAAA
GAGAGCAAACAATGATCATACCTATTCGTTGCTTTACATGTGGTAAAGTG
GTTGGCAATAAGTGGGACGCGTATCTTGGTCTTTTACAAGCAGAATATTC
TGAAGGTGACGCTCTAGATTATTTGGGATTGAAACGATATTGTTGTCGGC
GCATGTTATTAGCCCACGTTGATTTAATCGAAAAATTGTTGAACTACGCT
ccactggaaaaataaaaaccataACTTTCTTATTTACTTTTACACGAACT
TTCGTTGTATTTATAAACTGTGACTTTTCTATTTCGTGGATTTTCACTGA
TATCTACAGATATTTTACCctgagaaaacttttaaaagacAGAAACTAAA
CAGTGTGATCATGTCAATTGATATCCCTTCAAAACTAAAATGCGTTATGT
TTTGCGATTTCCACGCAACACTTGGTCCACAGATCAAATATCAACAACCA
GTAGATTTTATCAACAAAGATGAAATGGACAGTATAGCACCTTACATTAT
CACAAAACCGACTTTTCAAGGATATTTGATTAGCCTGAAAGCGTTTGGTT
ATACGTTCATGGGCTATCCGATTGTGATAAGCAATAACAAGTATAAAAGA
AACGCGTTATTCTTCAATGTGGTGTTTGTGTTTGACGAGGCTGATGACGT
CAAGGAGTTTGAGCCTGTGGTCACCAAACTTGCAGGCTATATGAAGACGT
TGGAATTGGAGTCAGAGTATATTTCAGACAAAGAAACAGAGAAAAATATA
CCGGAAATTTTGAAGAAGATCCTGAACGATTTATCGTCGACCGGTGAATG
TACTATCCCTGTCAATCATTGCAACACGATTTACCTCAAAGTGAACACAC
AGCCTATCGAGCCTCCTCTTGTTCTTGATCATCACGTTCCTATATTCAAC
TGGAGTAAATCTGCTGTCGATTCACAACATTGGAATCTAACTGCTAAAAG
AGTTCTCCCTTACATCGATGGTTTCAATCATGTGCAGAAGATCGCAACCC
TTGCAAATGTTGATCTTGCTTTGGTCAGATCAGCCCTTCAAACGCTTGTC
TTTCACGGCGTTCTtgagttgactcccatttttcTATATTCCAACATGTA
TGCAGTGAAGCCAGAAATTTCTAGCTTGTATCGCGATGAAGCTTTTCAGA
AAGAATGCGTCTCTTTTGTTGCTAGAGATAAAACGAATCTGCCTGAATTC
CGTGATGTCTTTATGTTGTACTGCGCTCTCGGTCCCGGCATTTCAGTGAG
TGCTTTGTGCGGGAGACATGATCTACAAGAACTTGGTATTGATGAAAAGA
AATTGATATTGTTTGGCATTGTGAAAAAGATTATccataaattatgtaaa
ttccCAGTATTGACTTCACCGGATTCCCTCTCGTTAGTGATCAGAGAGAA
ATCGCGTTGGATGACTGGCTATTATGATTATG Run BLAST on NCBI protein sequence of TCONS_00021349-protein >TCONS_00021349-protein ID=TCONS_00021349-protein|Name=TCONS_00021349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MSIDIPSKLKCVMFCDFHATLGPQIKYQQPVDFINKDEMDSIAPYIITKP
TFQGYLISLKAFGYTFMGYPIVISNNKYKRNALFFNVVFVFDEADDVKEF
EPVVTKLAGYMKTLELESEYISDKETEKNIPEILKKILNDLSSTGECTIP
VNHCNTIYLKVNTQPIEPPLVLDHHVPIFNWSKSAVDSQHWNLTAKRVLP
YIDGFNHVQKIATLANVDLALVRSALQTLVFHGVLELTPIFLYSNMYAVK
PEISSLYRDEAFQKECVSFVARDKTNLPEFRDVFMLYCALGPGISVSALC
GRHDLQELGIDEKKLILFGIVKKIIHKLCKFPVLTSPDSLSLVIREKSRW
MTGYYDY Run BLAST on NCBI transcript from alignment at sc0000385:3890..5832- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021349 ID=TCONS_00021349|Name=TCONS_00021349|organism=Clytia hemisphaerica|type=transcript|length=1943bp|location=Sequence derived from alignment at sc0000385:3890..5832- (Clytia hemisphaerica)
AGGAACAATAAAAAACAAATTATAAAAAGACAAAAAGTATTTGATCGAAA
GAGAGCAAACAATGATCATACCTATTCGTTGCTTTACATGTGGTAAAGTG
GTTGGCAATAAGTGGGACGCGTATCTTGGTCTTTTACAAGCAGAATATTC
TGAAGGTGACGCTCTAGATTATTTGGGATTGAAACGATATTGTTGTCGGC
GCATGTTATTAGCCCACGTTGATTTAATCGAAAAATTGTTGAACTACGCT
CCACTGGAAAAATAAAAACCATAACTTTCTTATTTACTTTTACACGAACT
TTCGTTGTATTTATAAACTGTGACTTTTCTATTTCGTGGATTTTCACTGA
TATCTACAGATATTTTACCCTGAGAAAACTTTTAAAAGACAGAAACTAAA
CAGTGTGATCATGTCAATTGATATCCCTTCAAAACTAAAATGCGTTATGT
TTTGCGATTTCCACGCAACACTTGGTCCACAGATCAAATATCAACAACCA
GTAGATTTTATCAACAAAGATGAAATGGACAGTATAGCACCTTACATTAT
CACAAAACCGACTTTTCAAGGATATTTGATTAGCCTGAAAGCGTTTGGTT
ATACGTTCATGGGCTATCCGATTGTGATAAGCAATAACAAGTATAAAAGA
AACGCGTTATTCTTCAATGTGGTGTTTGTGTTTGACGAGGCTGATGACGT
CAAGGAGTTTGAGCCTGTGGTCACCAAACTTGCAGGCTATATGAAGACGT
TGGAATTGGAGTCAGAGTATATTTCAGACAAAGAAACAGAGAAAAATATA
CCGGAAATTTTGAAGAAGATCCTGAACGATTTATCGTAAGTTACTCTCCT
GCCTACGGGAACTTCATAATACACGTTTTTAGGCTTAGAATGCCTAAAAA
CTAAGAAACATGCTGAGGCTGAGAATGAGAAAATAGCATTTTTTAATTCT
GTTTTTTTTTTAAGAACCTTCCAATCAAAACAAATGTTTTTTTTCTTTGC
ATGAAAATAGGCTGATTATGTCAAAAAGTTTAGAAACATGTAAGAAACAT
TTAAGGCTCAAAAGGCCGATTTCTTAAGAAACATTGAGGCTGCTTGGTAA
AACTAGTTTATTGTTTATTTGAAGACTCATCGTGGTTGGCAGGTTGAGTG
TGATTGAATACCTTTTTCTTTTGATATTCTGTTGAATAAAGATATCAGAT
TTTATAAAAGATATCTCGGAACGTTTATGAATGAAGCAAAATTTGAAAAA
GTTTGTTCAAAAATTTCTGATTGAGTTTGTCTGTCTATACTTTCAGGTCG
ACCGGTGAATGTACTATCCCTGTCAATCATTGCAACACGATTTACCTCAA
AGTGAACACACAGCCTATCGAGCCTCCTCTTGTTCTTGATCATCACGTTC
CTATATTCAACTGGAGTAAATCTGCTGTCGATTCACAACATTGGAATCTA
ACTGCTAAAAGAGTTCTCCCTTACATCGATGGTTTCAATCATGTGCAGAA
GATCGCAACCCTTGCAAATGTTGATCTTGCTTTGGTCAGATCAGCCCTTC
AAACGCTTGTCTTTCACGGCGTTCTTGAGTTGACTCCCATTTTTCTATAT
TCCAACATGTATGCAGTGAAGCCAGAAATTTCTAGCTTGTATCGCGATGA
AGCTTTTCAGAAAGAATGCGTCTCTTTTGTTGCTAGAGATAAAACGAATC
TGCCTGAATTCCGTGATGTCTTTATGTTGTACTGCGCTCTCGGTCCCGGC
ATTTCAGTGAGTGCTTTGTGCGGGAGACATGATCTACAAGAACTTGGTAT
TGATGAAAAGAAATTGATATTGTTTGGCATTGTGAAAAAGATTATCCATA
AATTATGTAAATTCCCAGTATTGACTTCACCGGATTCCCTCTCGTTAGTG
ATCAGAGAGAAATCGCGTTGGATGACTGGCTATTATGATTATG Coding sequence (CDS) from alignment at sc0000385:3890..5832- >TCONS_00021349 ID=TCONS_00021349|Name=TCONS_00021349|organism=Clytia hemisphaerica|type=CDS|length=2142bp|location=Sequence derived from alignment at sc0000385:3890..5832- (Clytia hemisphaerica)
GTCGACCGGTGAATGTACTATCCCTGTCAATCATTGCAACACGATTTACC
TCAAAGTGAACACACAGCCTATCGAGCCTCCTCTTGTTCTTGATCATCAC
GTTCCTATATTCAACTGGAGTAAATCTGCTGTCGATTCACAACATTGGAA
TCTAACTGCTAAAAGAGTTCTCCCTTACATCGATGGTTTCAATCATGTGC
AGAAGATCGCAACCCTTGCAAATGTTGATCTTGCTTTGGTCAGATCAGCC
CTTCAAACGCTTGTCTTTCACGGCGTTCTTGAGTTGACTCCCATTTTTCT
ATATTCCAACATGTATGCAGTGAAGCCAGAAATTTCTAGCTTGTATCGCG
ATGAAGCTTTTCAGAAAGAATGCGTCTCTTTTGTTGCTAGAGATAAAACG
AATCTGCCTGAATTCCGTGATGTCTTTATGTTGTACTGCGCTCTCGGTCC
CGGCATTTCAGTGAGTGCTTTGTGCGGGAGACATGATCTACAAGAACTTG
GTATTGATGAAAAGAAATTGATATTGTTTGGCATTGTGAAAAAGATTATC
CATAAATTATGTAAATTCCCAGTATTGACTTCACCGGATTCCCTCTCGTT
AGTGATCAGAGAGAAATCGCGTTGGATGACTGGCTATTATGATTATATGT
CAATTGATATCCCTTCAAAACTAAAATGCGTTATGTTTTGCGATTTCCAC
GCAACACTTGGTCCACAGATCAAATATCAACAACCAGTAGATTTTATCAA
CAAAGATGAAATGGACAGTATAGCACCTTACATTATCACAAAACCGACTT
TTCAAGGATATTTGATTAGCCTGAAAGCGTTTGGTTATACGTTCATGGGC
TATCCGATTGTGATAAGCAATAACAAGTATAAAAGAAACGCGTTATTCTT
CAATGTGGTGTTTGTGTTTGACGAGGCTGATGACGTCAAGGAGTTTGAGC
CTGTGGTCACCAAACTTGCAGGCTATATGAAGACGTTGGAATTGGAGTCA
GAGTATATTTCAGACAAAGAAACAGAGAAAAATATACCGGAAATTTTGAA
GAAGATCCTGAACGATTTATCGTCGACCGGTGAATGTACTATCCCTGTCA
ATCATTGCAACACGATTTACCTCAAAGTGAACACACAGCCTATCGAGCCT
CCTCTTGTTCTTGATCATCACGTTCCTATATTCAACTGGAGTAAATCTGC
TGTCGATTCACAACATTGGAATCTAACTGCTAAAAGAGTTCTCCCTTACA
TCGATGGTTTCAATCATGTGCAGAAGATCGCAACCCTTGCAAATGTTGAT
CTTGCTTTGGTCAGATCAGCCCTTCAAACGCTTGTCTTTCACGGCGTTCT
TGAGTTGACTCCCATTTTTCTATATTCCAACATGTATGCAGTGAAGCCAG
AAATTTCTAGCTTGTATCGCGATGAAGCTTTTCAGAAAGAATGCGTCTCT
TTTGTTGCTAGAGATAAAACGAATCTGCCTGAATTCCGTGATGTCTTTAT
GTTGTACTGCGCTCTCGGTCCCGGCATTTCAGTGAGTGCTTTGTGCGGGA
GACATGATCTACAAGAACTTGGTATTGATGAAAAGAAATTGATATTGTTT
GGCATTGTGAAAAAGATTATCCATAAATTATGTAAATTCCCAGTATTGAC
TTCACCGGATTCCCTCTCGTTAGTGATCAGAGAGAAATCGCGTTGGATGA
CTGGCTATTATGATTATATGTCAATTGATATCCCTTCAAAACTAAAATGC
GTTATGTTTTGCGATTTCCACGCAACACTTGGTCCACAGATCAAATATCA
ACAACCAGTAGATTTTATCAACAAAGATGAAATGGACAGTATAGCACCTT
ACATTATCACAAAACCGACTTTTCAAGGATATTTGATTAGCCTGAAAGCG
TTTGGTTATACGTTCATGGGCTATCCGATTGTGATAAGCAATAACAAGTA
TAAAAGAAACGCGTTATTCTTCAATGTGGTGTTTGTGTTTGACGAGGCTG
ATGACGTCAAGGAGTTTGAGCCTGTGGTCACCAAACTTGCAGGCTATATG
AAGACGTTGGAATTGGAGTCAGAGTATATTTCAGACAAAGAAACAGAGAA
AAATATACCGGAAATTTTGAAGAAGATCCTGAACGATTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021349-exon-sc0000385-1575043694:4998..5832 | TCONS_00021349-exon-sc0000385-1575043694:4998..5832 | Clytia hemisphaerica | exon |
| TCONS_00021349-exon-sc0000385-1575043694:3890..4536 | TCONS_00021349-exon-sc0000385-1575043694:3890..4536 | Clytia hemisphaerica | exon |
| TCONS_00021349-exon-sc0000385-1510915933:4998..5832 | TCONS_00021349-exon-sc0000385-1510915933:4998..5832 | Clytia hemisphaerica | exon |
| TCONS_00021349-exon-sc0000385-1510915933:3890..4536 | TCONS_00021349-exon-sc0000385-1510915933:3890..4536 | Clytia hemisphaerica | exon |
| TCONS_00021349-exon-sc0000385-1491911889:4998..5832 | TCONS_00021349-exon-sc0000385-1491911889:4998..5832 | Clytia hemisphaerica | exon |
| TCONS_00021349-exon-sc0000385-1491911889:3890..4536 | TCONS_00021349-exon-sc0000385-1491911889:3890..4536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:3890..5832 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009348 | NPR2 |
Blast
BLAST of TCONS_00021349 vs. Swiss-Prot (Human)
Match: NPRL2 (GATOR complex protein NPRL2 OS=Homo sapiens GN=NPRL2 PE=1 SV=2) HSP 1 Score: 309.686 bits (792), Expect = 3.953e-100 Identity = 148/350 (42.29%), Postives = 225/350 (64.29%), Query Frame = 3
Query: 432 KLKCVMFCDFHATLGPQIKYQQPVDFINKDEMDSIAPYIITKPTFQGYLISLKAFGYTFMGYPIVISNNKYKRNALFFNVVFVFDEADDVKEFEPVVTKLAGYMKTLELESEYISDKETEKNIPEILKKILNDLSSTGECTIPVNHCNTIYLKVNTQPIEPPLVLDHHVPIFNWSKSAVDSQHWNLTAKRVLPYIDGFNHVQKIATLANVDLALVRSALQTLVFHGVLELTPIFLYSNMYAVKPEISSLYRDEAFQKECVSFVARDKTNLPEFRDVFMLYCALGPGISVSALCGRHDLQELGIDEKKLILFGIVKKIIHKLCKFPVLTSPDSLSLVIREKSRWMTGYYDY 1481
+++C+ F +FH TLGP+I YQ P DFI+++ D++ YIITKP Q LI++ A +G P+ I + KY RNAL FN+ FV D EP+V KLAGY+ TLELES ++S +E+++ + I+ +L +L+++G CT+P++ NTI+LKV Q +PP+ ++ VP+F K + W+LT +++LPYIDGF H+QKI+ A+V+L LVR A+Q L+++GV+ L I YSN+Y P++ L D++ Q+ C+S+V + RDVF LYC+L PG +V L GRH Q +DE+KLI FG++K +I +L K+PV + + S +R TG + Y
Sbjct: 6 RIECIFFSEFHPTLGPKITYQVPEDFISRELFDTVQVYIITKPELQNKLITVTAMEKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELESSFVSMEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQS----HPARLYTGCHSY 351
The following BLAST results are available for this feature:
|
