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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021356 ID=TCONS_00021356|Name=TCONS_00021356|organism=Clytia hemisphaerica|type=transcript|length=2462bpRun BLAST on NCBI transcript from alignment at sc0000385:51333..65444- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021356 ID=TCONS_00021356|Name=TCONS_00021356|organism=Clytia hemisphaerica|type=transcript|length=14112bp|location=Sequence derived from alignment at sc0000385:51333..65444- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021356 vs. Swiss-Prot (Human)
Match: NOP9 (Nucleolar protein 9 OS=Homo sapiens GN=NOP9 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.651e-26 Identity = 115/497 (23.14%), Postives = 207/497 (41.65%), Query Frame = 3
Query: 450 LGLCKNIKKQVDVFLRDTYGSHVLSTLLQTLSGVQVPETITKSRISRESXXXXXXXXXPQHPQMFQNNVNLKDSVTTSEVPDSF----HKMYRRFLKTIKDDDNFGELLCHRTASPVLQVLVITLQKVSTEKFAQMTELIVRKARIEMTSPNNKXXXXXXXXXXXXXXXXXXXTFHKLPVVLTDQVGSHLFEVLLQTADEETFDNLTVRCMLKMLVSLSIHPIANFLVQTMLRCMDKKKKAKPFIRKLSKFTEDILAAGHMGCIVRVAESISRLGLSDQEEKFIETLTRSLHIPEDPEKMEKSFCKLVLSMMTHDIFYKVELIPSGEP-DHSLKNDAINYHGACLLKSCL------FFKKCQMLAKSLLSLNKEELTTVACHPSGNHVFESFLSNTNIKKKMKNSLSDMFRGKFAVLASDKFGSRVIDALWKNVGEESKDFIKTELTQNKSRLESDLYGRIVLCNCEINQQARKMREIKEKQD----KKRKIFEDIL 1895
LGL + V+ DT+GS V+ TLLQ L G + + R S+ S+ Q + EVP++F + FLK I + + +S LQV + L + + A + ++ +S + L + L DQ S L E +L + +L + L +L+ HPIANF +Q +L + + P +LS E +LA GH G ++ + + R+G + K ++ L + H E P + + L ++M ++++Y + P +H + A G + L F ++ +SL +L +L ++A P+G+HV ++ L++ ++ +K++ + +G++ LA + GSRV+DA+W ++ I EL + L D +G V N + ++ RE E+Q K+R+ IL
Sbjct: 184 LGLAAEVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESERARPRGSQSSEA--------------QKTPAQECKPADFEVPETFLNRLQDLSSSFLKDI------AVFITDKISSFCLQVALQVLHRKLPQFCAHLCNAVIGYLSTRGSSVDGS----------------------PLLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLAAHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVG--AYQAKVLQLLLEAFHCAE-PSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALGDVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKLRRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHVARNVALTTFLKR-REAWEQQQGAVAKRRRALNSIL 634 The following BLAST results are available for this feature:
BLAST of TCONS_00021356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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