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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021358 ID=TCONS_00021358|Name=TCONS_00021358|organism=Clytia hemisphaerica|type=transcript|length=3281bpRun BLAST on NCBI protein sequence of TCONS_00021358-protein >TCONS_00021358-protein ID=TCONS_00021358-protein|Name=TCONS_00021358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=938bp MSEKSKQEEENAEDDKKSGRLKEEVISYFKRVEQVLLEDAFEDGNHKEAFRun BLAST on NCBI transcript from alignment at sc0000385:51333..65444- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021358 ID=TCONS_00021358|Name=TCONS_00021358|organism=Clytia hemisphaerica|type=transcript|length=14112bp|location=Sequence derived from alignment at sc0000385:51333..65444- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000385:51333..65444- >TCONS_00021358 ID=TCONS_00021358|Name=TCONS_00021358|organism=Clytia hemisphaerica|type=CDS|length=28170bp|location=Sequence derived from alignment at sc0000385:51333..65444- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021358 vs. Swiss-Prot (Human)
Match: NOP9 (Nucleolar protein 9 OS=Homo sapiens GN=NOP9 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.720e-25 Identity = 72/283 (25.44%), Postives = 136/283 (48.06%), Query Frame = 3
Query: 1899 LVSLSIHPIANFLVQTMLRCMDKKKKAKPFIRKLSKFTEDILAAGHMGCIVRVAESISRLGLSDQEEKFIETLTRSLHIPEDPEKMEKSFCKLVLSMMTHDIFYKVELIPSGEP-DHSLKNDAINYHGACLLKSCL------FFKKCQMLAKSLLSLNKEELTTVACHPSGNHVFESFLSNTNIKKKMKNSLSDMFRGKFAVLASDKFGSRVIDALWKNVGEESKDFIKTELTQNKSRLESDLYGRIVLCNCEINQQARKMREIKEKQD----KKRKIFEDIL 2714
L +L+ HPIANF +Q +L + + P +LS E +LA GH G ++ + + R+G + K ++ L + H E P + + L ++M ++++Y + P +H + A G + L F ++ +SL +L +L ++A P+G+HV ++ L++ ++ +K++ + +G++ LA + GSRV+DA+W ++ I EL + L D +G V N + ++ RE E+Q K+R+ IL
Sbjct: 356 LQTLAAHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVG--AYQAKVLQLLLEAFHCAE-PSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALGDVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKLRRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHVARNVALTTFLKR-REAWEQQQGAVAKRRRALNSIL 634 The following BLAST results are available for this feature:
BLAST of TCONS_00021358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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