TCONS_00021363 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021363
Unique Name	TCONS_00021363
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3455

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000385:124351..131247-

transcript sequence

>TCONS_00021363 ID=TCONS_00021363|Name=TCONS_00021363|organism=Clytia hemisphaerica|type=transcript|length=3455bp
TTGAAAGCTGTTCGCTTGCTTAATGTGAAAAAAGATGGCTTTGGCAAGGA
AAGCAAGAAGTAAAACTTCAGCCAGTGTGGACGATTTGTTGTCAGTGATG
GAAgaaagcaacaacaacaacaaccttaATGTTCCTGGTGATTTGACGAA
GAATGGAAAATGGAAAAGTCCAGCTAAAGAAACCGTATCTTCAAGACAAC
GAAGAGAAATGAACGCTGGCAAAGGGaTACGCATGCGTAGTCGCACAGTG
TCAGCAGATGACGATACACCAGGAGCAAGTTCGTGGGCCAAAGAGAAATT
GATGGAACAAAAACGTCTCATTAAACAACATGAAGATGAAATGgaagaat
tgaaaaagaagaataaagaaCAACAGGACAAGCTGGAGAAGAGTTACGAA
AAGATCAATGAACTGATACAAATCAACACTGAGAAAAGCGACAAAATTGA
AACGTGTGAAAACGAGAAGACACAGATCATTCATGAAAGTGAAGACCTAA
AAACTCAAATCATCCAACTTCGCCAAAAGATAAGAACCATGCAAACTACC
TTGGAGAATAAGGACAACACACTTAACATGTGTCAGAAGATCTCTGAGGA
AAAGGATGTGGCGATGGTTGATTTAAATCATATGTTTGAGAAAGAGCAAA
AAGAGAAGATCGCCTTGGCTAGCCAGTATTCTTCTAAGCTAACTGATCAA
CAAGAGCTGAACAAGACTTTGCAACGTGAAATTGAGTTATTAAAACAGGA
GCTCGACCGACAGTTAGAGACTTCAACAAACGTGAAAAATGAGCTAGAAC
TAGAATTAAAAGCGGCTCAAGACAAATCACAAACATTGTTTGACGAGAGA
AGTCAGTACGAAGAAGCATGTCAGAAATACGAATCGGAGATTTCGGAACG
TATTCGAGAGAATCTCCATATAATGGAGGACTATGATAAATCGAAAGTTG
TTGAACACAAACAATTAAGCTTTATCAACGAACTTACAAAATCGAATCAA
GATTTAACGACAACTTTACGGAAAATACAAACCGAGTTTGAAGAGATAAA
GATCCAACTACAATTAACGAAATCAGAAGTTGTGGAAGCCAGGGAACATC
AACAAAGTGCTTTTCAACAACTCGAAGATGAGAAGAAAACAAACAGGGAC
CTGGAATCGAATCTACAAAATGGCGCGAAAACAATCAACGAACAGGACCA
ACTAGCCAAGAAATTACAAAACGAGATTGACCGCTTGAAAGCGGAACTTG
CTGAAACCACAGAGAATCTGCAAGAGATTACCAATAACCATCGAGAAGTT
GAGGAGAGATTCACCAATCTTGAGAGTGAGACAACGTCAAAGAGTTCTAA
AGCGCAGGAAGAGCTAGATGATTTCGTGCGGCGTGATCACGAACAAACAA
ACATGCTGAATAAACTTGTCAACGACCTTGAAGATACTAAGCATGACAAT
GAACTTAAAACCGAGTTAGCTAAAAATCTTCAATCGGAGCTACAAGAGAT
TCAAGAGAGATCTCGATTCGATAATGAAAACCAACTGAGAACcatacgtg
atttggaaaaacAAGTTTTTGATTTCACCAATTCTGCCGAACAGCAAGCT
GGCAAGATGAATAAATTGGAGATTGAGAACCAGGACTTGAGCACTAAAAT
GATCCAATGCATCGAAAACATTGGATCTTTGAAAATCGAGAATGGCAAAT
TGCAAAGTAACGTTACACAATTATCTGATGCAAATGAATTGCTTCAATCT
CGTCTCGATGACCTAACTGTATCATTTGAAGAGAAGGAGAACGAGTGTCA
GGATTATCAAGACAAAATTGAACTTTTGGAAGAATCTGGTTTGACACAGG
ATAATATTGTTGCTGACGTCACCGATCAAAATGAATTTATGAACGCTCAA
ATACAGGATCTCGAGCAAGAGGTTAGTCAACTTAAAATCAAGATCGGCAC
ATGCGTAGAAAAACATTCGTCCGAACTTACGCAGCTGCAAGACAACCACA
AGCAAAACGTCAGCAAGCTGACCGAGGAGCTGAACACCAATCGCCATAAA
TCACAAAGTGAAATCAACGAGCTGTTAAATAACTTTAATGAGGTTGAAAA
TGAGTTGAGCTTTTGTCAAGACGAGCTGGTTAACAAGACAAAGGAGTTAA
ATGACACACGTGACCAGCTTACGGAAATGTCTAACGCAGCGATCGCCAAA
GAACAAAAACTATTAACAGATCTTGAGACACTCAACgaacaaaatgaaaa
cattctaCAAACTGAAATCcgtaaattcaaaaaagaatgcGACGACAAAG
TCATGATTCTGCAAAGTAACTATAATGCGGAGATGATTAAATTGCAGAAC
GAATTTCAAGGGAACATGTCAgccatgaaacaaaaacacgAGGCGGAAGT
GAAGGAACATCAGGAACAAATGAGAAGCAAGCTTGAGAATGAAGGTATGG
TAGCTTCAGCTGAGAAAGAGAAACTACAAGAAAAATACACCAAGAAGTCT
GCTGATTATGATCGAGTACGCACCGAGTTGGACACCAAAATGAAAAGCAA
AGATGTCGAGTTAACCTCCAAATCACGAATTGTCAACCAACTTGGACGTC
GTATCGAAACACAACAAAAACTCATCGATTATATGATGAAATCTTTGGAA
GCTGAACGTACCAAAAACCATTCCTCTAACAACGATGTCATGTTTATGTT
AGCAAATTTGCAGTCCTCCCTTGATGACAAGTTACAACAAAACCCCCTTG
CAGGAGAGATCTACCAATACCGGCAGTCACTCTCCTCCGCTTCGTCTTTT
CAAGATTTGAACCATTCATATCCACAACCTCTCACGAATTCTTCACCTAG
GAGGGAGATGCACCACTCCACCACAGAGCCTGTCTATTCACCGATACCTT
CACCTACACCCTCACCCATGGTCGAAAAATCACCCCACGATGATTTCAAC
CTCTATCTAAGAAGACAAGAGCACCCATCAACAAAACCGCACAACCAAAC
TTTCCCTTCATCCAAAACACAAGATTACCCTTTAAATACATCCTCTGAAG
AATCAAAGCTCTCAAAATCTCTACCTGCTGAGAATGTGTTTGTCGACCAT
GGTTACGTTTCACCGACCCTCCATAACAACAGCACCAAAACGGTGTATTT
TGGTGAACAAATCCAAACCATTATGAAGACATTCGAGAAATTAGAATCAA
TCAGTGAAACAGCTTCTCCAAACAAGGAACTGAACATGGAAATTTGGAAA
CAGAAAATCCATTTCCGTTTGAAAGTCTTGGAAGACCAAATGGATGAGAT
CGATGATCAATCTGTCACTTCATCCAATAGCAATGCTTCAGATTCAGCTT
TTGATAAACCCAATCCATTACACGACCAACCTGAAGTTGTGTTCCATCCG
TCCACGCGAGAGATTCGTGAACTGATTGAGAATGTAAACAGACGTTATAA
GAGAC

Run BLAST on NCBI

transcript from alignment at sc0000385:124351..131247-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021363 ID=TCONS_00021363|Name=TCONS_00021363|organism=Clytia hemisphaerica|type=transcript|length=6897bp|location=Sequence derived from alignment at sc0000385:124351..131247- (Clytia hemisphaerica)
TTGAAAGCTGTTCGCTTGCTTAATGTGAAAAAAGATGGCTTTGGCAAGGA
AAGCAAGAAGTAAAACTTCAGCCAGGTAATTTCCCTTTTAATTGTATAAT
TTCGCAAATCAGCAATTTGAAGAATTTTGTTTGGATTTGATTTCGCGAAT
CAGTAAAAAATTGTTGAAAGTGGCTCTTGTTAAGGGCAAGAATAGCATTT
TTGCAGAGTTTACGCTGAAAATCTCATTGTGAGAATTTAATTTCGCGAGT
TACCGTTCTTACGCGTTTCGGTAGTTTTGATATAGCGGGAATAGCAAAAA
TTTGCGAATTTAAACCTGGCAAAAATTAACCGCTTTTCTCACCGACATTT
TTCCATTCACATTACCAGTGTGGACGATTTGTTGTCAGTGATGGAAGAAA
GCAACAACAACAACAACCTTAATGTTCCTGGTGATTTGACGAAGAATGGA
AAATGGAAAAGTCCAGCTAAAGAAACCGTATCTTCAAGACAACGAAGAGA
AATGAACGCTGGCAAAGGGGTAAGCTACAAACATTTTTTCTTCAATCAGA
GGACATTCTTAAAGTAGTTGTATATTAAAATATTTTGAAAAGGTTGATAC
TCCTTTATTGATGAGTCCGCTACCATCTTGCATATTTACTCGTATTTATT
TCTGCTGGAGCACGCTATTTAAGCTATGTGTCACATACCCGGTAGAAAAT
TTGGCCAAAATTTTTTTAAAGGTGGGAAATTGGCTTTGATTACATCCTAA
TTGGAAATTTAATGGAAAGAGTTGCACTCCAAAACCATCCATTCTTGATT
TGAGCTGGTTACAATTAGAACTTAAATGTTCCACCGGGGCACTGTGATTG
GGAAATAGCGAGAGCGGTCCCTATGGCCAGTGCTTTTTACTTTGCCGCAC
CAATTTCGATTATAATTGAAATATTGGATAGGAACCATTGGAGTGGACAT
TCATAAAATTTCACATGTATGATTTTGCCGAGCGACGCCTTTCGCAGGTA
TATTATGGAGAGTCATATTGAAGACAAGACGTCAGTAAAATGTTTGATTT
AACCATTTTCACTGGACCGCATACTTTGATATGTAGCCTTATTGATAAAT
TGAAAGTGTTTTTGATTTGATAATTTTACACACTTAAAAATTCCCAGTCT
TACATATAGAACACTTTAGATCTCAAAAAGGTCGGGCGGATGATGTAATT
TATAGCTTTTTGGAGTTTACCACTAGGTCTAGAAAAGTTACATTAGAATA
ATTTTACTCCATGAAATCTATGTTTCCCTCTAAAAAAACGTCAATATTTA
ATGCCGATGGGAAAGTTTGTCAATCACACAATGAATAGATTATTCAGAAT
CTTTTACCACACTTTGACATACAAAAATGTTTTTTCTTTACAATTGGAAA
ACCGGGCGTAACTTTTGTTAGATTTCAAATTTAGTTGAAATTTCTATAAA
AGTGGAACCGCAGGCCTTCAAATATTATTGAACTTAGTCCAGCCCTTGCA
ACCAAAGTTTGACCAAAATTCGCAAAACTTTTATTCGTACATTGTAATTT
TTGATTGCTATTACAGCTTTCAGTTAGCTTTTCCAGGGTTTATATTACCT
TACGTTCTGATCCTTTTGATTTTAGGCCTTCACTGTAAAGTTCTTTTATT
ATCATATAATTTTTTTTATTCTCGAGAGCTTTACGTTATGCAATTTCACC
AATTAAGCAAATTAAAAAATTTCGAAAGTTTTCAATTGGTATTGACTGAT
TTCACCGAAAATTTAGCCAAAATGAAAAAAAAGGAAATTAGAAAAAGGAT
CCAGTCTCTTAAACCATTGACTTTGTTGGCTTTTCCTGCTATGGTTTTCT
TCTTTGATATTTTTCCTTTGAATGGAAGCATCCTGCAGTGTGAGGAGCGG
GAATTTCTCAGATATCATTATCCCCAAGGGAAGAAGGTCACGCTCAAAAC
TAAGAGAAAGAAAAAGTATTTCTTTTAATCAAGAGACATATGGCAACGTC
TTAGTAACGGTATTTCAGACCCACGAAAATGTTTCATTGAACTTGAATGA
AATTTCCTTCCACCAAAAATAGAGTTTTTTTGCGGTTTCAATTCTGTTCA
TCATAGTTGTTTTTGATTATTATTTTGCATCATAATAATGTATTGATAAC
AGTTATTCTTCTTTCAAATGTAACAGAGAAGAAAATGTATGAAACTTAAG
ATAAATGTTGGTGTTTAAAACCTCTAATAGCTTAACTCGAACTCTCATAT
TGTGAACTACTTTTGCGGGTATCATGGCTGAGGTTCTACTATCACTTTTC
TTGGTACGTAAACTTGATGATATTGTACTGCTTTCAATCGCAGGAATTTT
TTTTTTTGGAAAAATAGTAGAAATGTAAAATGCATACCTCAGATTCACAC
TGTCGTTCGGTTAAGAGAAAGAATGAAGACATTTGATCTATTTATTCGGA
AAGAGCATTTGTCACGCTGGTCTGGAAGCTTATTTATTGTTTTAACTTTT
TGCTAGCTTTTTCCTTTGTTATTATCAAAAGATGAAAATGGATTTGCTCA
GTTTTTGACCATGTTACCGAGTATTCCTCTTGGGATTGGTTTAAGATATG
ATCACGTGATCAAGAAGTGAGCAAAGCAAATTAATTTCTCAAACGCAGGT
TCAAGTAAGAAACAATGGAAAGAAACAAAAGACTTCCAGATCGGTATTTT
TTATACGAACTATGGAAAGAGAGACAAACTTAATCCAACGCAAGCTAAGA
TCAATAAAAGAATTGCCATACATCATTTTAAACCTATTTCGCTTTCCATA
ACATCAAAATATTTCAATTTCAGATACGCATGCGTAGTCGCACAGTGTCA
GCAGATGACGATACACCAGGAGCAAGTTCGTGGGCCAAAGAGAAATTGAT
GGAACAAAAACGTCTCATTAAACAACATGAAGATGAAATGGAAGAATTGA
AAAAGAAGAATAAAGAACAACAGGTTTGTGTTCTATTTCTATTTAGTTAT
TTTGTGTTCTACCATCGATTTGTTTATTTACCCTTTAATTAGTCCTTAGT
CCTTTTCCATCTGTTTATTGTCAAATGCTAGTTTGAGAACTTTTTGTACA
GGGTTCTGGCCAGAACTTTCTTTTATAAAGAATCAATAAATTTTCTCTTG
AGCCTTGGCTGTTTTACTTTCTTTGGCAACTTCATAGGACGAAGTGAGTT
ACTTTAGGCTTTGTACCCGTTTCTTATCACTTTAACCCTTGAATTGGTTA
TGATTTTGACATTCATTCCAATCTTAGAATTTGTTCTTAAATCGTTCTTA
CTTTTTGACGATTTTCTTATAAAATTATTTTTATAAAAAAAGATTGTAGA
GCAGTATTTTGATTCGCAAACATTTATAGATATATTTCCTATGTTAAATA
TACAAAAGGTTTTTGTTAGGAGATGAGCAGAAGCCTATAGAGAAGATAAC
CTCAACGAACAAGGCTTAACTGTATATCCTCTAACGAGAAAGTTCCTCAT
GATGATATAGGAAGTATATCCATAGAGGTCCGCGAATCAGACTACGACGA
ACTAAATCTCGAAAATGCACGGTGCGTGCAAGGGCACAACTCAAATATTA
GCTTCGGTTTTCAATAATATTCTTCTGAAATTCTCTTCAGAACCCTTATA
TTGTTCAATTTTCCTTCATTGCAACCTTCCAAAGACGTTATTTGTTCCAA
ATTGAAAAATATAGATTGTTTATCTTTGTAGGACAAGCTGGAGAAGAGTT
ACGAAAAGATCAATGAACTGATACAAATCAACACTGAGAAAAGCGACAAA
ATTGAAACGTGTGAAAACGAGAAGACACAGATCATTCATGAAAGTGAAGA
CCTAAAAACTCAAATCATCCAACTTCGCCAAAAGATAAGAACCATGCAAA
CTACCTTGGAGAATAAGGACAACACACTTAACATGTGTCAGAAGATCTCT
GAGGAAAAGGATGTGGCGATGGTTGATTTAAATCATATGTTTGAGAAAGA
GCAAAAAGAGAAGATCGCCTTGGCTAGCCAGTATTCTTCTAAGCTAACTG
ATCAACAAGAGCTGAACAAGACTTTGCAACGTGAAATTGAGTTATTAAAA
CAGGAGCTCGACCGACAGTTAGAGACTTCAACAAACGTGAAAAATGAGCT
AGAACTAGAATTAAAAGCGGCTCAAGACAAATCACAAACATTGTTTGACG
AGAGAAGTCAGTACGAAGAAGCATGTCAGAAATACGAATCGGAGATTTCG
GAACGTATTCGAGAGAATCTCCATATAATGGAGGACTATGATAAATCGAA
AGTTGTTGAACACAAACAATTAAGCTTTATCAACGAACTTACAAAATCGA
ATCAAGATTTAACGACAACTTTACGGAAAATACAAACCGAGTTTGAAGAG
ATAAAGATCCAACTACAATTAACGAAATCAGAAGTTGTGGAAGCCAGGGA
ACATCAACAAAGTGCTTTTCAACAACTCGAAGATGAGAAGAAAACAAACA
GGGACCTGGAATCGAATCTACAAAATGGCGCGAAAACAATCAACGAACAG
GACCAACTAGCCAAGAAATTACAAAACGAGATTGACCGCTTGAAAGCGGA
ACTTGCTGAAACCACAGAGAATCTGCAAGAGATTACCAATAACCATCGAG
AAGTTGAGGAGAGATTCACCAATCTTGAGAGTGAGACAACGTCAAAGAGT
TCTAAAGCGCAGGAAGAGCTAGATGATTTCGTGCGGCGTGATCACGAACA
AACAAACATGCTGAATAAACTTGTCAACGACCTTGAAGATACTAAGCATG
ACAATGAACTTAAAACCGAGTTAGCTAAAAATCTTCAATCGGAGCTACAA
GAGATTCAAGAGAGATCTCGATTCGATAATGAAAACCAACTGAGAACCAT
ACGTGATTTGGAAAAACAAGTTTTTGATTTCACCAATTCTGCCGAACAGC
AAGCTGGCAAGATGAATAAATTGGAGATTGAGAACCAGGACTTGAGCACT
AAAATGATCCAATGCATCGAAAACATTGGATCTTTGAAAATCGAGAATGG
CAAATTGCAAAGTAACGTTACACAATTATCTGATGCAAATGAATTGCTTC
AATCTCGTCTCGATGACCTAACTGTATCATTTGAAGAGAAGGAGAACGAG
TGTCAGGATTATCAAGACAAAATTGAACTTTTGGAAGAATCTGGTTTGAC
ACAGGATAATATTGTTGCTGACGTCACCGATCAAAATGAATTTATGAACG
CTCAAATACAGGATCTCGAGCAAGAGGTTAGTCAACTTAAAATCAAGATC
GGCACATGCGTAGAAAAACATTCGTCCGAACTTACGCAGCTGCAAGACAA
CCACAAGCAAAACGTCAGCAAGCTGACCGAGGAGCTGAACACCAATCGCC
ATAAATCACAAAGTGAAATCAACGAGCTGTTAAATAACTTTAATGAGGTT
GAAAATGAGTTGAGCTTTTGTCAAGACGAGCTGGTTAACAAGACAAAGGA
GTTAAATGACACACGTGACCAGCTTACGGAAATGTCTAACGCAGCGATCG
CCAAAGAACAAAAACTATTAACAGATCTTGAGACACTCAACGAACAAAAT
GAAAACATTCTACAAACTGAAATCCGTAAATTCAAAAAAGAATGCGACGA
CAAAGTCATGATTCTGCAAAGTAACTATAATGCGGAGATGATTAAATTGC
AGAACGAATTTCAAGGGAACATGTCAGCCATGAAACAAAAACACGAGGCG
GAAGTGAAGGAACATCAGGAACAAATGAGAAGCAAGCTTGAGAATGAAGG
TATGGTAGCTTCAGCTGAGAAAGAGAAACTACAAGAAAAATACACCAAGA
AGTCTGCTGATTATGATCGAGTACGCACCGAGTTGGACACCAAAATGAAA
AGCAAAGATGTCGAGTTAACCTCCAAATCACGAATTGTCAACCAACTTGG
ACGTCGTATCGAAACACAACAAAAACTCATCGATTATATGATGAAATCTT
TGGAAGCTGAACGTACCAAAAACCATTCCTCTAACAACGATGTCATGTTT
ATGTTAGCAAATTTGCAGTCCTCCCTTGATGACAAGTTACAACAAAACCC
CCTTGCAGGAGAGATCTACCAATACCGGCAGTCACTCTCCTCCGCTTCGT
CTTTTCAAGATTTGAACCATTCATATCCACAACCTCTCACGAATTCTTCA
CCTAGGAGGGAGATGCACCACTCCACCACAGAGCCTGTCTATTCACCGAT
ACCTTCACCTACACCCTCACCCATGGTCGAAAAATCACCCCACGATGATT
TCAACCTCTATCTAAGAAGACAAGAGCACCCATCAACAAAACCGCACAAC
CAAACTTTCCCTTCATCTAAAACACAAGATCNATTCAACCTCTATCTACG
GCGACAAGAGCAGTATCCATCAACAAAACTGCTCAATCAAACCTTTCCAA
CATCCAAAACACAAGATTACCCTTTAAATACATCCTCTGAAGAATCAAAG
CTCTCAAAATCTCTACCTGCTGAGAATGTGTTTGTCGACCATGGTTACGT
TTCACCGACCCTCCATAACAACAGCACCAAAACGGTGTATTTTGGTGAAC
AAATCCAAACCATTATGAAGACATTCGAGAAATTAGAATCAATCAGTGAA
ACAGCTTCTCCAAACAAGGAACTGAACATGGAAATTTGGAAACAGAAAAT
CCATTTCCGTTTGAAAGTCTTGGAAGACCAAATGGATGAGATCGATGATC
AATCTGTCACTTCATCCAATAGCAATGCTTCAGATTCAGCTTTTGATAAA
CCCAATCCATTACACGACCAACCTGAAGTTGTGTTCCATCCGTCCACGCG
AGAGATTCGTGAACTGATTGAGAATGTAAACAGACGTTATAAGAGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011962	XLOC_011962	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000385	supercontig	sc0000385:124351..131247 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125416	0.00447788	5.69217e-06	0.000385834	92.9807	41.3766	42.712	33.0565	31.3465	37.8277	13.6972	18.8094	0	0.413697	0.183781	0.434559	0.00405743	0	0	1.43016	0	1.0459	0.468871	7.13843e-09	1.16556e-07	0.170726	0.67614	0.00229997	0.19188	0.341792

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00021363 vs. Swiss-Prot (Human)

BLAST of TCONS_00021363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00021363 (transcript) - C. hemisphaerica