TCONS_00021376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021376
Unique NameTCONS_00021376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021376 ID=TCONS_00021376|Name=TCONS_00021376|organism=Clytia hemisphaerica|type=transcript|length=657bp
caaagatggcgaacataacttggtccagggatatataaagCTGCCAATCA
ACAGATTCGAACCATCCAAGAGGTTGTAGCTAAAGAAGGAACACCAGGGG
CATCATCGCCACCATGGGCGGCAACATACACCGTAGATAAAGCCTTCAAT
CATCCCAACTATTATCGTGGATTCCATAGCAAAGATCCGTATGGCAACGC
ACCAGAAATGATTTGGTATCATTTCAGAACCGGTTTCAAACCAGCTGAAG
TTACTTTTCGAGTGGGTGAGACTGCAAGCGTGGGTCCGGCCAAATACCAA
ATTGTCGGAACCAACGATGAACATTGCAACCAATATTCTATATGGGACAT
CTTGTGTGAAGATTTATCCGGTGAAAAGTTCGTAACACGATACCAAATCA
AACGATGTGTTGTCAGCGATTTTCATACCAAGTCCTACAATTGTATTGGA
ATCCGAGTTTTCGAAAACAGCAGTGCAACTCGAGATTATGGTATTGGAAA
TATCAGATTCTGGAAGAAGGTTTAAAAAACAGAAATCTTTGATGatatat
ttaatatttatagattttagaaattcaaatttaattttatcttGATTTCC
ACACTCAAAACTTGTCAACTAGTAAAATGTTCGTCTGTAATTCAGTAAGA
ATACATG
Run BLAST on NCBI

transcript from alignment at sc0000385:353025..354571-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021376 ID=TCONS_00021376|Name=TCONS_00021376|organism=Clytia hemisphaerica|type=transcript|length=1547bp|location=Sequence derived from alignment at sc0000385:353025..354571- (Clytia hemisphaerica)
CAAAGATGGCGAACATAACTTGGTCCAGGGATATATAAAGGTAAGTGTGG
GGACGCTTTTCTGGAAACCAATGCTCTCATACCGAGAGAAGTTGCTCTTA
GCTGACGTCAATTGTTTACAATATTGCCTTTTTTGTCATAAAGAGACCAA
TTTTAGAGGTGATTATCAAAAATTTGTCAAAAAAAAACGCGAAATTAAAT
TCCACGAAAATTTGTTCCGCGAAAATTTGTTCCCTTAAGGTACTAGACTG
GAGTCTATAATGCGTGTATTACAGTAGTATAGGCGTTATATGATAATACG
ATTATTGTTACGGGATTTAGATTGTATAAAAACTGAGCTTGCTAGACTAT
AAAGGTACTTGCATTTTACTTGTCAAGACCCTGGTAGAAGGGGGCGTACG
GGGGTTGCAGACACCGAAATACCGACGCATATTTCTTGGATTACCGTCAA
CACCGACAGCAAAATTTGGTAAAATCCTTATTTTGTCACCGCATGGCATG
TTTGACACCGAAATACCGTCAGTTTTTTCTCCAAACACCGAAACACCGAC
AGAAAAAAGGGTTAATACCGTCACACCATCAAACCTGTACGTTCCCCCCT
GGTAGGAGTTTCTCAATTTAAGCTAAGCAAAATCTTTTAATCGTGATGTA
AATGTAAAAGTACCAAATACGCTAGATCTTATCCTTTATATGATGTAACC
ATTGAACGTTAGACAAAATTTTCTTTTCTATCCATTTCTAAAGCTGCCAA
TCAACAGATTCGAACCATCCAAGAGGTTGTAGCTAAAGAAGGAACACCAG
GGGCATCATCGCCACCATGGGCGGCAACATACACCGTAGATAAAGCCTTC
AATCATCCCAACTATTATCGTGGATTCCATAGCAAAGATCCGTATGGCAA
CGCACCAGAAATGATTTGGTATCATTTCAGAACCGGTTTCAAACCAGCTG
AAGTTACTTTTCGAGTGGGTGGTATGTATCATTAATTTTAATTTAATTTT
AATTATTCTACTTAAAGTTTTCCACGTTCATGAAACATTAGATGAACATT
GCTTGGGAGAAAAGAAGTATAACAATCGTGACATTTTTGGCAAATCTCAG
TATTTCATTGTGTGAGTAATTATAGGAGATAGAAAACTTCTCAATTTACC
TGTTTCAGAGACTGCAAGCGTGGGTCCGGCCAAATACCAAATTGTCGGAA
CCAACGATGAACATTGCAACCAATATTCTATATGGGACATCTTGTGTGAA
GATTTATCCGGTGAAAAGTTCGTAACACGATACCAAATCAAACGATGTGT
TGTCAGCGATTTTCATACCAAGTCCTACAATTGTATTGGAATCCGAGTTT
TCGAAAACAGCAGTGCAACTCGAGATTATGGTATTGGAAATATCAGATTC
TGGAAGAAGGTTTAAAAAACAGAAATCTTTGATGATATATTTAATATTTA
TAGATTTTAGAAATTCAAATTTAATTTTATCTTGATTTCCACACTCAAAA
CTTGTCAACTAGTAAAATGTTCGTCTGTAATTCAGTAAGAATACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011967XLOC_011967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021376-exon-sc0000385-1575043694:354532..354571TCONS_00021376-exon-sc0000385-1575043694:354532..354571Clytia hemisphaericaexon
TCONS_00021376-exon-sc0000385-1575043694:353601..353828TCONS_00021376-exon-sc0000385-1575043694:353601..353828Clytia hemisphaericaexon
TCONS_00021376-exon-sc0000385-1575043694:353025..353413TCONS_00021376-exon-sc0000385-1575043694:353025..353413Clytia hemisphaericaexon
TCONS_00021376-exon-sc0000385-1510915933:354532..354571TCONS_00021376-exon-sc0000385-1510915933:354532..354571Clytia hemisphaericaexon
TCONS_00021376-exon-sc0000385-1510915933:353601..353828TCONS_00021376-exon-sc0000385-1510915933:353601..353828Clytia hemisphaericaexon
TCONS_00021376-exon-sc0000385-1510915933:353025..353413TCONS_00021376-exon-sc0000385-1510915933:353025..353413Clytia hemisphaericaexon
TCONS_00021376-exon-sc0000385-1491911889:354532..354571TCONS_00021376-exon-sc0000385-1491911889:354532..354571Clytia hemisphaericaexon
TCONS_00021376-exon-sc0000385-1491911889:353601..353828TCONS_00021376-exon-sc0000385-1491911889:353601..353828Clytia hemisphaericaexon
TCONS_00021376-exon-sc0000385-1491911889:353025..353413TCONS_00021376-exon-sc0000385-1491911889:353025..353413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:353025..354571 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.284205	0.463344	0.0650864	0	0.412539	0.832335	1.60937	0.998642	35.176	6.58728	41.922	52.336	4.61963	5.66594	18.6326	21.4005	1.61236	1.33867	3.31174	4.22077	0.887319	0.722855	0.272398	0	0.170049	0.151764	0	0.215891	0.0878963	0.447762
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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