|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021393 ID=TCONS_00021393|Name=TCONS_00021393|organism=Clytia hemisphaerica|type=transcript|length=2329bp
GCTTGAAGTAAGATATAAATGCTACTATCATCTCGTCATATTACTGTTTG
AGATGATCTAGTAtctttataaaattttaaagatgaGAGTTAAGATCAAC
TACGTTGGAGTTGGTTTACTTGCTTCTCTACTATTCTTGGTATTTCATTA
TTATAAGGGATCTGGATCTAGACCTAAAACTACACATAACAAGATCTTAA
CATTATCAACAGAAAATGACCGAACTGTACTTCGAACTGTaaagaaaaca
acaacattGGCTACGACCAACGATGATCAGGAAGAATCAAACAGAATCAA
GTTCACTCAGCTTCAATATGGACTTGATGGTCTTGAGCATTCCCAAGAAG
CTCAAAGTCGACATTTTAAAGAAGAGCTTCAAGGAATCAAAGAATCACAA
AGCCAAATATTAGAGAAACAAGAAAGTTATAATGAAATACAAAAAGAGTT
TGTGGATCGTCagaaaatacttgaagaaaCTTTGAAGAATCTGAAAAAAC
ATTTCGACGATGAACATGATGAACGAATGCGTGAACGAGAATACGGTCAA
AAGAAATTACATCGTTTAATACGAGCTGAAAAAGAGATTAAGAAACAACG
CCAACAGCAAGTGAAGGAGCAAAAGAAAAACGACAAGGAACAAAAAGACG
CGAATGAATCAGAGGAGGATGAAGCAAAAAGAATGATTGAAGAACAGTTG
AAACGAGATGCAGAAGAAGCTGATTATCAAGCAGAAGAAGAAAGgAAAGA
GATGGAAGCAGAGAGACAACAACAGCGTGAATATGAGCAAGAACATCAAA
GTCACCAACAAATACAAACAGAGGGTGCACCTTCTGGACTCGTCGTTAAC
AATCGAGAAGATTTAAACCAAATGAATGAACGTGGTAAAATGACTACAAC
TCGGAATTCAGAACTTCCAAGTGGCAATCGAATACAAAAAAAGAAGCCTT
CGTCAGTGGGTCGAGTTTATCAAAGTAACTATCCTGTCACGTTTGATGAG
GTTGCAATGCTACATATTCATAATGCGACATACTCTAAAAACACACATAA
GGAAGTAAGAGAATTCTATGACCGTGAACGTGTCTCTAAGAAGAAGTATG
GAGAACGTGTCTTAGACGTAAAGCGTGACCGTGATGTTTTAATGGCTTTA
TTTCCTGGACCAAACGAGAAGCGTGATCGAGTCACGGATCAGTTACGTGT
TCGATTAAATGTAAAAGACACGAAAATCATTTATCTGAAATCTTCAGTGA
ATACTCAACAGAAGTTTGATAATGATAAATGCAAAGTCAATAAGTGTACT
TTTACGAACGATATCAATTTGTTACCACATGTCGATGCTATCTACTCAGA
GCTTGATACTATACCGCAGCCTTTTGATAtccaaaataaaaaccaaataa
aaatcaGGTTTCAACTTGAATCATCAGATAATTACCCAACTTTAACATCA
GACACTGCTATTTTTAACTGGACAGCTACGTACAGAGTTGATAGCGTTTT
AAATGCACCCTACGAACGTTTTGTAACGAAACTTAGCGTTACTGACTTAC
CTACAAAGCCGTTAGAGAATTATGCAAAAGGTAAAAAGAAAATGGCTGCT
TGGTTTGTGTCTAATTGTCATGCGGGTAGTGGCCGGCAAGATTATATCAA
AGACTTACAAAAATACATAACAGTTGATGTGTACGGGTTATGTGgtagaa
aatgttcgaaaaaagacaaaaagtgtTTTGAACAGCTGAACACAGACTAT
AAATTTTATATGGCTTTTGAAAACAGTCATTGCAAAGATTATCTGACGGA
GAAACCTTATTGGAATGCGCTTTTCTACAAAGTCGTCCCAGTGGTTTTCG
GCGCCCATCGTGACGATTACAAACGCCAATTGCCGCCCAACAGTTATATT
CTAGCCGAAGATTTTGAATCACCAAAACATTTAGCTGATTATCTAATTTA
TCTTGACCATAACGATGATCTCTACAACCAATATTTTCTTTGGAAAGGAA
CTGGAAAATTTATAAACACTAAATTCTTGTGTCGTTTATGCACTATGGTA
CATTTGGCGCCGCATTTTCCAATGTGGTATAGTGAAGTTAATGATTGGTG
GGGTCCGGATAAAACATGTGTCCAACCAGAAAGGCATAAACATTTGATGT
ATAGTTCTTGGGGGAATAAAACAAGACCATCCGAATTTTCGGAATATGTA
CATTACGGATATAAGAGGATTGATTAGTAGTCTCTTGTTTTTAAATCAGG
TAGTGCGAATAGAATTAAAAaatccggaatgcgggtgaaggaaaaaagct
ctcatgcgtccggctggaaaaaaaaattt Run BLAST on NCBI protein sequence of TCONS_00021393-protein >TCONS_00021393-protein ID=TCONS_00021393-protein|Name=TCONS_00021393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=714bp
MRVKINYVGVGLLASLLFLVFHYYKGSGSRPKTTHNKILTLSTENDRTVL
RTVKKTTTLATTNDDQEESNRIKFTQLQYGLDGLEHSQEAQSRHFKEELQ
GIKESQSQILEKQESYNEIQKEFVDRQKILEETLKNLKKHFDDEHDERMR
EREYGQKKLHRLIRAEKEIKKQRQQQVKEQKKNDKEQKDANESEEDEAKR
MIEEQLKRDAEEADYQAEEERKEMEAERQQQREYEQEHQSHQQIQTEGAP
SGLVVNNREDLNQMNERGKMTTTRNSELPSGNRIQKKKPSSVGRVYQSNY
PVTFDEVAMLHIHNATYSKNTHKEVREFYDRERVSKKKYGERVLDVKRDR
DVLMALFPGPNEKRDRVTDQLRVRLNVKDTKIIYLKSSVNTQQKFDNDKC
KVNKCTFTNDINLLPHVDAIYSELDTIPQPFDIQNKNQIKIRFQLESSDN
YPTLTSDTAIFNWTATYRVDSVLNAPYERFVTKLSVTDLPTKPLENYAKG
KKKMAAWFVSNCHAGSGRQDYIKDLQKYITVDVYGLCGRKCSKKDKKCFE
QLNTDYKFYMAFENSHCKDYLTEKPYWNALFYKVVPVVFGAHRDDYKRQL
PPNSYILAEDFESPKHLADYLIYLDHNDDLYNQYFLWKGTGKFINTKFLC
RLCTMVHLAPHFPMWYSEVNDWWGPDKTCVQPERHKHLMYSSWGNKTRPS
EFSEYVHYGYKRID Run BLAST on NCBI transcript from alignment at sc0000385:533159..536295- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021393 ID=TCONS_00021393|Name=TCONS_00021393|organism=Clytia hemisphaerica|type=transcript|length=3137bp|location=Sequence derived from alignment at sc0000385:533159..536295- (Clytia hemisphaerica)
GCTTGAAGTAAGATATAAATGCTACTATCATCTCGTCATATTACTGTTTG
AGATGATCTAGTATCTTTATAAAATTTTAAAGATGAGAGTTAAGATCAAC
TACGTTGGAGTTGGTTTACTTGCTTCTCTACTATTCTTGGTATTTCATTA
TTATAAGGGATCTGGATCTAGACCTAAAACTACACATAACAAGATCTTAA
CATTATCAACAGAAAATGACCGAACTGTACTTCGAACTGTAAAGAAAACA
ACAACATTGGCTACGACCAACGATGATCAGGAAGAATCAAACAGAATCAA
GTTCACTCAGCTTCAATATGGACTTGATGGTCTTGAGCATTCCCAAGAAG
CTCAAAGTCGACATTTTAAAGAAGAGCTTCAAGGAATCAAAGAATCACAA
AGCCAAATATTAGAGAAACAAGAAAGTTATAATGAAATACAAAAAGAGTT
TGTGGATCGTCAGAAAATACTTGAAGAAACTTTGAAGAATCTGAAAAAAC
ATTTCGACGATGAACATGATGAACGAATGCGTGAACGAGAATACGGTCAA
AAGAAATTACATCGTTTAATACGAGCTGAAAAAGAGATTAAGAAACAACG
CCAACAGCAAGTGAAGGAGCAAAAGAAAAACGACAAGGAACAAAAAGACG
CGAATGAATCAGAGGAGGATGAAGCAAAAAGAATGATTGAAGAACAGTTG
AAACGAGATGCAGAAGAAGCTGATTATCAAGCAGAAGAAGAAAGGTAATG
ATTACAACCCCTTCTCTCACATACCAGGTAGGGGGTAACCGTCAAGGACC
GAAACTCGATGGTCGTTGATATCCCCAAAAAATTCCCTACAAAAGCAAAA
TACTTCCATTTAGGCGTCTCGGAATATTCCCAAGCTTACCTTAATGGTTT
TTTGATAGGATATTACTGCAAACTTTAAAAATACTTGTCCAATCTTTTAG
CTAATGTCGTTGATATATAGACTTGAAATAATTTACTTTGAGGACTTGCA
AAATGAGTGTTGCTATTTTTGAGATTTTTAGGAAAGAGATGGAAGCAGAG
AGACAACAACAGCGTGAATATGAGCAAGAACATCAAAGTCACCAACAAAT
ACAAACAGAGGGTGCACCTTCTGGACTCGTCGTTAACAATCGAGAAGATT
TAAACCAAATGAATGAACGTGGTAAAATGACTACAACTCGGAATTCAGAA
CTTCCAAGTGGCAATCGAATACAAAAAAAGAAGCCTTCGTCAGTGGGTCG
AGTTTATCAAAGTAACTATCCTGTCACGTTTGATGAGGTTGCAATGCTAC
ATATTCATAATGCGACATACTCTAAAAACACACATAAGGAAGTAAGAGAA
TTCTATGACCGTGAACGTGTCTCTAAGAAGAAGTATGGAGAACGTGTCTT
AGACGTAAAGCGTGACCGTGATGTTTTAATGGCTTTATTTCCTGGACCAA
ACGAGAAGCGTGATCGAGTCACGGATCAGTTACGTGTTCGATTAAATGTA
AAAGACACGAAAATCATTTATCTGAAATCTTCAGTGAATACTCAACAGAA
GTTTGATAATGATAAATGCAAAGTCAATAAGTGTACTTTTACGAACGATA
TCAATTTGTTACCACATGTCGATGCTATCTACTCAGAGCTTGATACTATA
CCGCAGCCTTTTGATATCCAAAATAAAAACCAAATAAAAATCAGGTTTCA
ACTTGAATCATCAGATAATTACCCAACTTTAACATCAGACACTGCTATTT
TTAACTGGACAGCTACGTACAGAGTTGATAGCGTTTTAAATGCACCCTAC
GAACGTTTTGTAACGAAACTTAGCGTTACTGACTTACCTACAAAGCCGTT
AGAGAATTATGCAAAAGGTAAAAAGAAAATGGCTGCTTGGTTTGTGTCTA
ATTGTCATGCGGGTAGTGGCCGGCAAGATTATATCAAAGACTTACAAAAA
TACATAACAGTTGATGTGTACGGGTTATGTGGTAGAAAATGTTCGAAAAA
AGACAAAAAGTGTTTTGAACAGCTGAACACAGACTATAAATTTTATATGG
CTTTTGAAAACAGTCATTGCAAAGATTATCTGACGGAGAAACCTTATTGG
AATGCGCTTTTGTAAGTATTACTTTGACTGTGTAAAGTCAGCTTTAGTCT
CTATGAAAGAAATTTCTTATATGGCGACCTTACGGGATGGTTAAAGCAAA
AACAAAGTATTTTTCTTACTTAGTTAATAAGTTCCCTTATTTCATATGGA
AAAGACTAGACCATGTTTTAAGAGGATCGCATATGTTATATATATGTTAC
TCTAATGGACGCCGGGAATAATTATGTCATCCAGTAAATACCAAAAATTC
GACAATAGGCACTGAGGTTGGGTAAAATTTGTGTAACTGTGGAAGCTTGG
CTGTGGTAAGTAAAATGATGTCACGCAAGGGGTGATATGCATGGTTTTTA
TAAGAATTAACGATATAAGAACATCAGGCTTCCATGGCGAAAATATTAAG
AACAAGCTAAGAATAATATTAGGCTTAACACCCAAAAAGTTAAGAGCAGA
ATTGTGTAAATTCTTATAAAAAATGTGTAAGGTACGCTATTTAAAGCTCT
TAATAAGAATACTTAATTTTTTCTATTTATAGCTACAAAGTCGTCCCAGT
GGTTTTCGGCGCCCATCGTGACGATTACAAACGCCAATTGCCGCCCAACA
GTTATATTCTAGCCGAAGATTTTGAATCACCAAAACATTTAGCTGATTAT
CTAATTTATCTTGACCATAACGATGATCTCTACAACCAATATTTTCTTTG
GAAAGGAACTGGAAAATTTATAAACACTAAATTCTTGTGTCGTTTATGCA
CTATGGTACATTTGGCGCCGCATTTTCCAATGTGGTATAGTGAAGTTAAT
GATTGGTGGGGTCCGGATAAAACATGTGTCCAACCAGAAAGGCATAAACA
TTTGATGTATAGTTCTTGGGGGAATAAAACAAGACCATCCGAATTTTCGG
AATATGTACATTACGGATATAAGAGGATTGATTAGTAGTCTCTTGTTTTT
AAATCAGGTAGTGCGAATAGAATTAAAAAATCCGGAATGCGGGTGAAGGA
AAAAAGCTCTCATGCGTCCGGCTGGAAAAAAAAATTT Coding sequence (CDS) from alignment at sc0000385:533159..536295- >TCONS_00021393 ID=TCONS_00021393|Name=TCONS_00021393|organism=Clytia hemisphaerica|type=CDS|length=6435bp|location=Sequence derived from alignment at sc0000385:533159..536295- (Clytia hemisphaerica)
CTACAAAGTCGTCCCAGTGGTTTTCGGCGCCCATCGTGACGATTACAAAC
GCCAATTGCCGCCCAACAGTTATATTCTAGCCGAAGATTTTGAATCACCA
AAACATTTAGCTGATTATCTAATTTATCTTGACCATAACGATGATCTCTA
CAACCAATATTTTCTTTGGAAAGGAACTGGAAAATTTATAAACACTAAAT
TCTTGTGTCGTTTATGCACTATGGTACATTTGGCGCCGCATTTTCCAATG
TGGTATAGTGAAGTTAATGATTGGTGGGGTCCGGATAAAACATGTGTCCA
ACCAGAAAGGCATAAACATTTGATGTATAGTTCTTGGGGGAATAAAACAA
GACCATCCGAATTTTCGGAATATGTACATTACGGATATAAGAGGATTGAT
TAGGAAAGAGATGGAAGCAGAGAGACAACAACAGCGTGAATATGAGCAAG
AACATCAAAGTCACCAACAAATACAAACAGAGGGTGCACCTTCTGGACTC
GTCGTTAACAATCGAGAAGATTTAAACCAAATGAATGAACGTGGTAAAAT
GACTACAACTCGGAATTCAGAACTTCCAAGTGGCAATCGAATACAAAAAA
AGAAGCCTTCGTCAGTGGGTCGAGTTTATCAAAGTAACTATCCTGTCACG
TTTGATGAGGTTGCAATGCTACATATTCATAATGCGACATACTCTAAAAA
CACACATAAGGAAGTAAGAGAATTCTATGACCGTGAACGTGTCTCTAAGA
AGAAGTATGGAGAACGTGTCTTAGACGTAAAGCGTGACCGTGATGTTTTA
ATGGCTTTATTTCCTGGACCAAACGAGAAGCGTGATCGAGTCACGGATCA
GTTACGTGTTCGATTAAATGTAAAAGACACGAAAATCATTTATCTGAAAT
CTTCAGTGAATACTCAACAGAAGTTTGATAATGATAAATGCAAAGTCAAT
AAGTGTACTTTTACGAACGATATCAATTTGTTACCACATGTCGATGCTAT
CTACTCAGAGCTTGATACTATACCGCAGCCTTTTGATATCCAAAATAAAA
ACCAAATAAAAATCAGGTTTCAACTTGAATCATCAGATAATTACCCAACT
TTAACATCAGACACTGCTATTTTTAACTGGACAGCTACGTACAGAGTTGA
TAGCGTTTTAAATGCACCCTACGAACGTTTTGTAACGAAACTTAGCGTTA
CTGACTTACCTACAAAGCCGTTAGAGAATTATGCAAAAGGTAAAAAGAAA
ATGGCTGCTTGGTTTGTGTCTAATTGTCATGCGGGTAGTGGCCGGCAAGA
TTATATCAAAGACTTACAAAAATACATAACAGTTGATGTGTACGGGTTAT
GTGGTAGAAAATGTTCGAAAAAAGACAAAAAGTGTTTTGAACAGCTGAAC
ACAGACTATAAATTTTATATGGCTTTTGAAAACAGTCATTGCAAAGATTA
TCTGACGGAGAAACCTTATTGGAATGCGCTTTTATGAGAGTTAAGATCAA
CTACGTTGGAGTTGGTTTACTTGCTTCTCTACTATTCTTGGTATTTCATT
ATTATAAGGGATCTGGATCTAGACCTAAAACTACACATAACAAGATCTTA
ACATTATCAACAGAAAATGACCGAACTGTACTTCGAACTGTAAAGAAAAC
AACAACATTGGCTACGACCAACGATGATCAGGAAGAATCAAACAGAATCA
AGTTCACTCAGCTTCAATATGGACTTGATGGTCTTGAGCATTCCCAAGAA
GCTCAAAGTCGACATTTTAAAGAAGAGCTTCAAGGAATCAAAGAATCACA
AAGCCAAATATTAGAGAAACAAGAAAGTTATAATGAAATACAAAAAGAGT
TTGTGGATCGTCAGAAAATACTTGAAGAAACTTTGAAGAATCTGAAAAAA
CATTTCGACGATGAACATGATGAACGAATGCGTGAACGAGAATACGGTCA
AAAGAAATTACATCGTTTAATACGAGCTGAAAAAGAGATTAAGAAACAAC
GCCAACAGCAAGTGAAGGAGCAAAAGAAAAACGACAAGGAACAAAAAGAC
GCGAATGAATCAGAGGAGGATGAAGCAAAAAGAATGATTGAAGAACAGTT
GAAACGAGATGCAGAAGAAGCTGATTATCAAGCAGAAGAAGAAAGCTACA
AAGTCGTCCCAGTGGTTTTCGGCGCCCATCGTGACGATTACAAACGCCAA
TTGCCGCCCAACAGTTATATTCTAGCCGAAGATTTTGAATCACCAAAACA
TTTAGCTGATTATCTAATTTATCTTGACCATAACGATGATCTCTACAACC
AATATTTTCTTTGGAAAGGAACTGGAAAATTTATAAACACTAAATTCTTG
TGTCGTTTATGCACTATGGTACATTTGGCGCCGCATTTTCCAATGTGGTA
TAGTGAAGTTAATGATTGGTGGGGTCCGGATAAAACATGTGTCCAACCAG
AAAGGCATAAACATTTGATGTATAGTTCTTGGGGGAATAAAACAAGACCA
TCCGAATTTTCGGAATATGTACATTACGGATATAAGAGGATTGATTAGGA
AAGAGATGGAAGCAGAGAGACAACAACAGCGTGAATATGAGCAAGAACAT
CAAAGTCACCAACAAATACAAACAGAGGGTGCACCTTCTGGACTCGTCGT
TAACAATCGAGAAGATTTAAACCAAATGAATGAACGTGGTAAAATGACTA
CAACTCGGAATTCAGAACTTCCAAGTGGCAATCGAATACAAAAAAAGAAG
CCTTCGTCAGTGGGTCGAGTTTATCAAAGTAACTATCCTGTCACGTTTGA
TGAGGTTGCAATGCTACATATTCATAATGCGACATACTCTAAAAACACAC
ATAAGGAAGTAAGAGAATTCTATGACCGTGAACGTGTCTCTAAGAAGAAG
TATGGAGAACGTGTCTTAGACGTAAAGCGTGACCGTGATGTTTTAATGGC
TTTATTTCCTGGACCAAACGAGAAGCGTGATCGAGTCACGGATCAGTTAC
GTGTTCGATTAAATGTAAAAGACACGAAAATCATTTATCTGAAATCTTCA
GTGAATACTCAACAGAAGTTTGATAATGATAAATGCAAAGTCAATAAGTG
TACTTTTACGAACGATATCAATTTGTTACCACATGTCGATGCTATCTACT
CAGAGCTTGATACTATACCGCAGCCTTTTGATATCCAAAATAAAAACCAA
ATAAAAATCAGGTTTCAACTTGAATCATCAGATAATTACCCAACTTTAAC
ATCAGACACTGCTATTTTTAACTGGACAGCTACGTACAGAGTTGATAGCG
TTTTAAATGCACCCTACGAACGTTTTGTAACGAAACTTAGCGTTACTGAC
TTACCTACAAAGCCGTTAGAGAATTATGCAAAAGGTAAAAAGAAAATGGC
TGCTTGGTTTGTGTCTAATTGTCATGCGGGTAGTGGCCGGCAAGATTATA
TCAAAGACTTACAAAAATACATAACAGTTGATGTGTACGGGTTATGTGGT
AGAAAATGTTCGAAAAAAGACAAAAAGTGTTTTGAACAGCTGAACACAGA
CTATAAATTTTATATGGCTTTTGAAAACAGTCATTGCAAAGATTATCTGA
CGGAGAAACCTTATTGGAATGCGCTTTTATGAGAGTTAAGATCAACTACG
TTGGAGTTGGTTTACTTGCTTCTCTACTATTCTTGGTATTTCATTATTAT
AAGGGATCTGGATCTAGACCTAAAACTACACATAACAAGATCTTAACATT
ATCAACAGAAAATGACCGAACTGTACTTCGAACTGTAAAGAAAACAACAA
CATTGGCTACGACCAACGATGATCAGGAAGAATCAAACAGAATCAAGTTC
ACTCAGCTTCAATATGGACTTGATGGTCTTGAGCATTCCCAAGAAGCTCA
AAGTCGACATTTTAAAGAAGAGCTTCAAGGAATCAAAGAATCACAAAGCC
AAATATTAGAGAAACAAGAAAGTTATAATGAAATACAAAAAGAGTTTGTG
GATCGTCAGAAAATACTTGAAGAAACTTTGAAGAATCTGAAAAAACATTT
CGACGATGAACATGATGAACGAATGCGTGAACGAGAATACGGTCAAAAGA
AATTACATCGTTTAATACGAGCTGAAAAAGAGATTAAGAAACAACGCCAA
CAGCAAGTGAAGGAGCAAAAGAAAAACGACAAGGAACAAAAAGACGCGAA
TGAATCAGAGGAGGATGAAGCAAAAAGAATGATTGAAGAACAGTTGAAAC
GAGATGCAGAAGAAGCTGATTATCAAGCAGAAGAAGAAAGCTACAAAGTC
GTCCCAGTGGTTTTCGGCGCCCATCGTGACGATTACAAACGCCAATTGCC
GCCCAACAGTTATATTCTAGCCGAAGATTTTGAATCACCAAAACATTTAG
CTGATTATCTAATTTATCTTGACCATAACGATGATCTCTACAACCAATAT
TTTCTTTGGAAAGGAACTGGAAAATTTATAAACACTAAATTCTTGTGTCG
TTTATGCACTATGGTACATTTGGCGCCGCATTTTCCAATGTGGTATAGTG
AAGTTAATGATTGGTGGGGTCCGGATAAAACATGTGTCCAACCAGAAAGG
CATAAACATTTGATGTATAGTTCTTGGGGGAATAAAACAAGACCATCCGA
ATTTTCGGAATATGTACATTACGGATATAAGAGGATTGATTAGGAAAGAG
ATGGAAGCAGAGAGACAACAACAGCGTGAATATGAGCAAGAACATCAAAG
TCACCAACAAATACAAACAGAGGGTGCACCTTCTGGACTCGTCGTTAACA
ATCGAGAAGATTTAAACCAAATGAATGAACGTGGTAAAATGACTACAACT
CGGAATTCAGAACTTCCAAGTGGCAATCGAATACAAAAAAAGAAGCCTTC
GTCAGTGGGTCGAGTTTATCAAAGTAACTATCCTGTCACGTTTGATGAGG
TTGCAATGCTACATATTCATAATGCGACATACTCTAAAAACACACATAAG
GAAGTAAGAGAATTCTATGACCGTGAACGTGTCTCTAAGAAGAAGTATGG
AGAACGTGTCTTAGACGTAAAGCGTGACCGTGATGTTTTAATGGCTTTAT
TTCCTGGACCAAACGAGAAGCGTGATCGAGTCACGGATCAGTTACGTGTT
CGATTAAATGTAAAAGACACGAAAATCATTTATCTGAAATCTTCAGTGAA
TACTCAACAGAAGTTTGATAATGATAAATGCAAAGTCAATAAGTGTACTT
TTACGAACGATATCAATTTGTTACCACATGTCGATGCTATCTACTCAGAG
CTTGATACTATACCGCAGCCTTTTGATATCCAAAATAAAAACCAAATAAA
AATCAGGTTTCAACTTGAATCATCAGATAATTACCCAACTTTAACATCAG
ACACTGCTATTTTTAACTGGACAGCTACGTACAGAGTTGATAGCGTTTTA
AATGCACCCTACGAACGTTTTGTAACGAAACTTAGCGTTACTGACTTACC
TACAAAGCCGTTAGAGAATTATGCAAAAGGTAAAAAGAAAATGGCTGCTT
GGTTTGTGTCTAATTGTCATGCGGGTAGTGGCCGGCAAGATTATATCAAA
GACTTACAAAAATACATAACAGTTGATGTGTACGGGTTATGTGGTAGAAA
ATGTTCGAAAAAAGACAAAAAGTGTTTTGAACAGCTGAACACAGACTATA
AATTTTATATGGCTTTTGAAAACAGTCATTGCAAAGATTATCTGACGGAG
AAACCTTATTGGAATGCGCTTTTATGAGAGTTAAGATCAACTACGTTGGA
GTTGGTTTACTTGCTTCTCTACTATTCTTGGTATTTCATTATTATAAGGG
ATCTGGATCTAGACCTAAAACTACACATAACAAGATCTTAACATTATCAA
CAGAAAATGACCGAACTGTACTTCGAACTGTAAAGAAAACAACAACATTG
GCTACGACCAACGATGATCAGGAAGAATCAAACAGAATCAAGTTCACTCA
GCTTCAATATGGACTTGATGGTCTTGAGCATTCCCAAGAAGCTCAAAGTC
GACATTTTAAAGAAGAGCTTCAAGGAATCAAAGAATCACAAAGCCAAATA
TTAGAGAAACAAGAAAGTTATAATGAAATACAAAAAGAGTTTGTGGATCG
TCAGAAAATACTTGAAGAAACTTTGAAGAATCTGAAAAAACATTTCGACG
ATGAACATGATGAACGAATGCGTGAACGAGAATACGGTCAAAAGAAATTA
CATCGTTTAATACGAGCTGAAAAAGAGATTAAGAAACAACGCCAACAGCA
AGTGAAGGAGCAAAAGAAAAACGACAAGGAACAAAAAGACGCGAATGAAT
CAGAGGAGGATGAAGCAAAAAGAATGATTGAAGAACAGTTGAAACGAGAT
GCAGAAGAAGCTGATTATCAAGCAGAAGAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021393-exon-sc0000385-1575043694:535552..536295 | TCONS_00021393-exon-sc0000385-1575043694:535552..536295 | Clytia hemisphaerica | exon |
| TCONS_00021393-exon-sc0000385-1575043694:534185..535264 | TCONS_00021393-exon-sc0000385-1575043694:534185..535264 | Clytia hemisphaerica | exon |
| TCONS_00021393-exon-sc0000385-1575043694:533159..533663 | TCONS_00021393-exon-sc0000385-1575043694:533159..533663 | Clytia hemisphaerica | exon |
| TCONS_00021393-exon-sc0000385-1510915933:535552..536295 | TCONS_00021393-exon-sc0000385-1510915933:535552..536295 | Clytia hemisphaerica | exon |
| TCONS_00021393-exon-sc0000385-1510915933:534185..535264 | TCONS_00021393-exon-sc0000385-1510915933:534185..535264 | Clytia hemisphaerica | exon |
| TCONS_00021393-exon-sc0000385-1510915933:533159..533663 | TCONS_00021393-exon-sc0000385-1510915933:533159..533663 | Clytia hemisphaerica | exon |
| TCONS_00021393-exon-sc0000385-1491911889:535552..536295 | TCONS_00021393-exon-sc0000385-1491911889:535552..536295 | Clytia hemisphaerica | exon |
| TCONS_00021393-exon-sc0000385-1491911889:534185..535264 | TCONS_00021393-exon-sc0000385-1491911889:534185..535264 | Clytia hemisphaerica | exon |
| TCONS_00021393-exon-sc0000385-1491911889:533159..533663 | TCONS_00021393-exon-sc0000385-1491911889:533159..533663 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:533159..536295 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008417 | fucosyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008417 |
fucosyltransferase activity |
Blast
BLAST of TCONS_00021393 vs. Swiss-Prot (Human)
Match: FUT5 (Alpha-(1,3)-fucosyltransferase 5 OS=Homo sapiens GN=FUT5 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.784e-34 Identity = 94/260 (36.15%), Postives = 128/260 (49.23%), Query Frame = 2
Query: 1295 CTFTNDINLLPHVDAI--------YSELDTIPQPFDIQNKNQIKIRFQLESSDNYPTLTSDTAIFNWTATYRVDSVLNAPYERFVTKLSVTDLPTKPLENYAKGKKKMAAWFVSNCHAGSGRQDYIKDLQKYITVDVYGLCGRKCSKKDKKCFEQLNTDYKFYMAFENSHCKDYLTEKPYWNALFYKVVPVVFGAHRDDYKRQLPPNSYILAEDFESPKHLADYLIYLDHNDDLYNQYFLWKGTGK---FINTKFLCRLC 2041
C T D ++ P DA+ Y+ +P P + + Q I F +ES N L + FN T +YR DS + PY + P P N + K ++ AW VSN S R Y + LQ ++ VDVYG R K + + YKFY+AFENS DY+TEK + NAL VPVV G R +Y+R LPP+++I +DF+SPK LA YL LD + Y YF W+ T + F C+ C
Sbjct: 104 CNITADSSVYPQADAVIVHHWDIMYNPSANLPPP--TRPQGQRWIWFSMESPSNCRHLEALDGYFNLTMSYRSDSDIFTPYGWLE---PWSGQPAHPPLNLS-AKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYG---RSHKPLPKGTMMETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKAC 354
The following BLAST results are available for this feature:
|
