TCONS_00021398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021398
Unique NameTCONS_00021398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021398 ID=TCONS_00021398|Name=TCONS_00021398|organism=Clytia hemisphaerica|type=transcript|length=667bp
AATGTGTGTTTCTTATATCGACACAGTGAGTACGATTAGAGAGATAAGAC
CTGAGTAAAGCAAGAGCTGGTCCTCTGATGCCATAATGAACCAGTTTATG
TAGCAGGATGGTATGCTCTACTGTATCAAAAGCCTTCTTAAGATCAATGA
AAACTCCAGCTGCAAAATTACCATTATCTAATGCTGATCTGACAACTTCA
GTAAGGGCAATCACAGCATGGTTAGTGCTGTGACCTTTTCTAAAACCGAA
TTGCTTTTCACTAAAGATGTTGTTGTTTTCGAAGAATTTGACTAGTCTGA
AATGAAggagtttttcgaagattttatttatgttggATAGCAGAGAAATG
GGTCTGTAATTGCCAACATCTAGTTTTGAGTCTTTCTTGTGTAAAGGTTT
TATATTAGCTTGTTTTAGACAATCAGGGTAGATGCCTTCTTTAATGCTGA
CGTTAAAGATGTGAGATAATACGGTGCTTGCAGTTGGAGATATCATTTTT
AGGAAGGATGTAGGAATACTTGAAGGTCCTGATGCCTTCTGAGCATCAAG
ATCATCGATAAGCTTAAGTACAGCAGTGGGTGTAATCTGCCTGAAACGAA
TAGAGTTACATAATGGATCCCCTAAATAATCAATGAAGTATTTGTTAGTC
CGAGGGATTTGATTTTN
Run BLAST on NCBI

protein sequence of TCONS_00021398-protein

>TCONS_00021398-protein ID=TCONS_00021398-protein|Name=TCONS_00021398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
XNQIPRTNKYFIDYLGDPLCNSIRFRQITPTAVLKLIDDLDAQKASGPSS
IPTSFLKMISPTASTVLSHIFNVSIKEGIYPDCLKQANIKPLHKKDSKLD
VGNYRPISLLSNINKIFEKLLHFRLVKFFENNNIFSEKQFGFRKGHSTNH
AVIALTEVVRSALDNGNFAAGVFIDLKKAFDTVEHTILLHKLVHYGIRGP
ALALLRSYLSNRTHCVDIRNTH
Run BLAST on NCBI

transcript from alignment at sc0000385:70310..70976

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021398 ID=TCONS_00021398|Name=TCONS_00021398|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at sc0000385:70310..70976 (Clytia hemisphaerica)
NAAAATCAAATCCCTCGGACTAACAAATACTTCATTGATTATTTAGGGGA
TCCATTATGTAACTCTATTCGTTTCAGGCAGATTACACCCACTGCTGTAC
TTAAGCTTATCGATGATCTTGATGCTCAGAAGGCATCAGGACCTTCAAGT
ATTCCTACATCCTTCCTAAAAATGATATCTCCAACTGCAAGCACCGTATT
ATCTCACATCTTTAACGTCAGCATTAAAGAAGGCATCTACCCTGATTGTC
TAAAACAAGCTAATATAAAACCTTTACACAAGAAAGACTCAAAACTAGAT
GTTGGCAATTACAGACCCATTTCTCTGCTATccaacataaataaaatctt
cgaaaaactccTTCATTTCAGACTAGTCAAATTCTTCGAAAACAACAACA
TCTTTAGTGAAAAGCAATTCGGTTTTAGAAAAGGTCACAGCACTAACCAT
GCTGTGATTGCCCTTACTGAAGTTGTCAGATCAGCATTAGATAATGGTAA
TTTTGCAGCTGGAGTTTTCATTGATCTTAAGAAGGCTTTTGATACAGTAG
AGCATACCATCCTGCTACATAAACTGGTTCATTATGGCATCAGAGGACCA
GCTCTTGCTTTACTCAGGTCTTATCTCTCTAATCGTACTCACTGTGTCGA
TATAAGAAACACACATT

Coding sequence (CDS) from alignment at sc0000385:70310..70976

>TCONS_00021398 ID=TCONS_00021398|Name=TCONS_00021398|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000385:70310..70976 (Clytia hemisphaerica)
NAAAATCAAATCCCTCGGACTAACAAATACTTCATTGATTATTTAGGGGA
TCCATTATGTAACTCTATTCGTTTCAGGCAGATTACACCCACTGCTGTAC
TTAAGCTTATCGATGATCTTGATGCTCAGAAGGCATCAGGACCTTCAAGT
ATTCCTACATCCTTCCTAAAAATGATATCTCCAACTGCAAGCACCGTATT
ATCTCACATCTTTAACGTCAGCATTAAAGAAGGCATCTACCCTGATTGTC
TAAAACAAGCTAATATAAAACCTTTACACAAGAAAGACTCAAAACTAGAT
GTTGGCAATTACAGACCCATTTCTCTGCTATccaacataaataaaatctt
cgaaaaactccTTCATTTCAGACTAGTCAAATTCTTCGAAAACAACAACA
TCTTTAGTGAAAAGCAATTCGGTTTTAGAAAAGGTCACAGCACTAACCAT
GCTGTGATTGCCCTTACTGAAGTTGTCAGATCAGCATTAGATAATGGTAA
TTTTGCAGCTGGAGTTTTCATTGATCTTAAGAAGGCTTTTGATACAGTAG
AGCATACCATCCTGCTACATAAACTGGTTCATTATGGCATCAGAGGACCA
GCTCTTGCTTTACTCAGGTCTTATCTCTCTAATCGTACTCACTGTGTCGA
TATAAGAAACACACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011983XLOC_011983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021398-exon-sc0000385-1491911889:70310..70976TCONS_00021398-exon-sc0000385-1491911889:70310..70976Clytia hemisphaericaexon
TCONS_00021398-exon-sc0000385-1510915933:70310..70976TCONS_00021398-exon-sc0000385-1510915933:70310..70976Clytia hemisphaericaexon
TCONS_00021398-exon-sc0000385-1575043694:70310..70976TCONS_00021398-exon-sc0000385-1575043694:70310..70976Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021398-proteinTCONS_00021398-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:70310..70976 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.01774	1.84556	1.42841	0.919296	0.316762	1.51422	0	0.472909	0.494579	0.307419	0.446614	0.647678	0.427388	0.321501	0.556948	0.662391	0.196762	0.242464	0.0888168	0.0985435	0.141165	0.432643	0.396279	0.499139	0.178082	0.232024
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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