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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021402 ID=TCONS_00021402|Name=TCONS_00021402|organism=Clytia hemisphaerica|type=transcript|length=2440bp
ttaagctcTTTTGAAATGATCCAAAAGTCGTCACCTTTTGCTAGTTCGAG
GAGGGCTTGAACAGATTTTGCGTCTTCGTTCTTGTTTTCTTCTTGTTGCT
TCAGCTCGAAGTATCCCTCAGCGATTGAGTTTTACGAGGATGAAATGGCG
TTGGGCGGAAGTAAACCACCCTCTTTCAATTGATTAAATTTCTTAGAAGT
GACGGTTACTTCTGCACCATTTTTATCCACGCGTTGGGCGGAAGTAGTCC
AGATGTATAAGAAAATTTACACGGGGCTCTTCATTCCGCatttcttaaaa
agtttaaacaaaacgtttaaaatttaaaaatggtcAAGCAATATATTTTG
GTGGTATCACCATTCTCAAGCTTATAAAAATACAAGTGTTCTATCAGATT
ACACAAATTTCCATCTACATctaaaaaattcagttttttcgagagtaatt
aaaattgattaaaacattcttaaaacaaaagaaagtgcATAAAATATCTA
CGTGACTCCATTTCTAAAAAGCAGTAATTTTGATGAatctaattggtcat
taagTCCAGGTTTCTTGAGAGCAATAAAAGATGCTTCAAGATTTTTAATA
AGAGTTCTCCAATTCTTTGGGGCATTGAGGACAATTTTCCATTTGAATTT
GTGATTTGGGTAGGAATTTAAATGTTTTGCAGGCTCTGATTTTAAAGTGA
CATTTtcgtttttgacatttttaaacaaaaccttTCATTATTCACGAGAA
AAACATACAATCAAGATTCAGGTGACAAAAAATGGTCTTGTACCCCAAAG
CTATTTGCCATACGTCCCAACTTTAGAGCAAAACAGTTGATAACTAAATG
AAAAATTGTTTGGTGTCACATTTCTCCAAGAAAATACCAATTCTCATTTG
GTTTACAAAACTTGCTAAATTTTCAAGTCCATTTgatgaatatttcaaaa
gctATCAAAATATATCGTTTGAGTCATTTAAAGCCCCAACCAAGATGCAC
GAATGGTTaaatctaagaaaagtttgaaaatctctcatcTCTCAAACATA
GGTCTGCTCTACAAAGATTCCTGCGTCGAACATTTGCTCAGTGTTCAAAG
TTCTTCCgtcagacggatttccgtctaaAGTTATGTAACAACCAGCCAAA
TTTGAAGAATCTGGCTGAGGTTGGAGTGTTATTAAGCCCCAGTTCCGTCT
GACAGGAGAATCTCTGCTTTGACCACTGATCACCAAGGTATGCTACGTAA
CGTAATCCACGATTCTTTATGCTGCGTGAAAAGATCCTTTTTGCGCCGGT
GGTTTCCATTGCGCCAGCAGAGCCGCCATGATTCATTTTACAGCTTGGGA
AGATGCTTTGTTTGACTTCTTTAAGGATTCCTTCAATTTGCAGGATTTGC
AGTTCCTACTCATTATCTCACAGTCAAGAACTTTATCATTTTCTAAAGAT
AAAGTTGTAAAAGTTCCATTCAACGAGGAGTGTCCACGCCGCTGCCAGGA
GCCATCTCCGGAAATTTCTACGTCAACAACGTCATTATCAGAATCATGTT
TAAGTTCAACAGCGGCTTCTTGAATGGTTTCCTCAGCTACTTCAGTAGTT
GCTTTCAATAGAGTTTGAACAGATTTGTCATAGCTGTTTGAAGTCATTGG
CGTCGGTAAGTTGCAAACTTCTCAATGACAGAATAGCCTCGTCCAATAGA
TCGCATAGCATAAATCATGCGAGAGTTTATGTCATAAGTCTGTTTACTTG
AGTAAGTTTTTGATGTATTGAATTCCTTTTCATAGTCACATACTTCACAC
TTCATATATAACGCAGAAGAAACCCCTTTTTCTGCAAATCTCTCGTGCAG
CATAAAATGCTCACATTTGCATTCCGGGCAACTGAGCGCCTTCAGTGTTT
GCGATAGTATCTCAACATCAATGAGTCTGTAACCAGTTATGTCAGGGTCA
CTTTGTCTTGGTGTGTCAGTTGCAATAGGTAAGATCTTTGAGTAGGAAAC
ATTGTTTGGTTTCATTGGTGTATTTTGATTATCAGCTTCCTTAATTTCTG
GCGTACGTAAGTTATCTGGGTTGTCTTCATTGTCTTCATTGGACGGTGAC
GCGGTCGCTGTGGTGGTGGTGGGGGGGGAGTCTCTACGATATCTGGACTT
TCCTCAGGAGGGGTTACATCTTCTTGTGGAGTGGTTTCAGGTTGTGGACA
AGTAAAACGATTGCCATGGAATCTTCTTTTTTTAGGTGCTTTTGTCCTGG
CTCTATCTACTCTATCTAATTAATTTACCCATGAAGTTTTTAGCTGAACT
ACATTCGGTTCAGTGAGCTTCCATGATGTTTGATTGCTTTTAAGATCTCT
CCAATGTCCCACATTTCCTTACCTGGCGGGTCTACAAAAAATCGCGATGA
TAAGCAACGCGCTGGTGAAAATGAGTTGTCCTCTCTCGGC Run BLAST on NCBI protein sequence of TCONS_00021402-protein >TCONS_00021402-protein ID=TCONS_00021402-protein|Name=TCONS_00021402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MKPNNVSYSKILPIATDTPRQSDPDITGYRLIDVEILSQTLKALSCPECK
CEHFMLHERFAEKGVSSALYMKCEVCDYEKEFNTSKTYSSKQTYDINSRM
IYAMRSIGRGYSVIEKFATYRRQ Run BLAST on NCBI transcript from alignment at sc0000385:135553..137992 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021402 ID=TCONS_00021402|Name=TCONS_00021402|organism=Clytia hemisphaerica|type=transcript|length=2440bp|location=Sequence derived from alignment at sc0000385:135553..137992 (Clytia hemisphaerica)
GCCGAGAGAGGACAACTCATTTTCACCAGCGCGTTGCTTATCATCGCGAT
TTTTTGTAGACCCGCCAGGTAAGGAAATGTGGGACATTGGAGAGATCTTA
AAAGCAATCAAACATCATGGAAGCTCACTGAACCGAATGTAGTTCAGCTA
AAAACTTCATGGGTAAATTAATTAGATAGAGTAGATAGAGCCAGGACAAA
AGCACCTAAAAAAAGAAGATTCCATGGCAATCGTTTTACTTGTCCACAAC
CTGAAACCACTCCACAAGAAGATGTAACCCCTCCTGAGGAAAGTCCAGAT
ATCGTAGAGACTCCCCCCCCACCACCACCACAGCGACCGCGTCACCGTCC
AATGAAGACAATGAAGACAACCCAGATAACTTACGTACGCCAGAAATTAA
GGAAGCTGATAATCAAAATACACCAATGAAACCAAACAATGTTTCCTACT
CAAAGATCTTACCTATTGCAACTGACACACCAAGACAAAGTGACCCTGAC
ATAACTGGTTACAGACTCATTGATGTTGAGATACTATCGCAAACACTGAA
GGCGCTCAGTTGCCCGGAATGCAAATGTGAGCATTTTATGCTGCACGAGA
GATTTGCAGAAAAAGGGGTTTCTTCTGCGTTATATATGAAGTGTGAAGTA
TGTGACTATGAAAAGGAATTCAATACATCAAAAACTTACTCAAGTAAACA
GACTTATGACATAAACTCTCGCATGATTTATGCTATGCGATCTATTGGAC
GAGGCTATTCTGTCATTGAGAAGTTTGCAACTTACCGACGCCAATGACTT
CAAACAGCTATGACAAATCTGTTCAAACTCTATTGAAAGCAACTACTGAA
GTAGCTGAGGAAACCATTCAAGAAGCCGCTGTTGAACTTAAACATGATTC
TGATAATGACGTTGTTGACGTAGAAATTTCCGGAGATGGCTCCTGGCAGC
GGCGTGGACACTCCTCGTTGAATGGAACTTTTACAACTTTATCTTTAGAA
AATGATAAAGTTCTTGACTGTGAGATAATGAGTAGGAACTGCAAATCCTG
CAAATTGAAGGAATCCTTAAAGAAGTCAAACAAAGCATCTTCCCAAGCTG
TAAAATGAATCATGGCGGCTCTGCTGGCGCAATGGAAACCACCGGCGCAA
AAAGGATCTTTTCACGCAGCATAAAGAATCGTGGATTACGTTACGTAGCA
TACCTTGGTGATCAGTGGTCAAAGCAGAGATTCTCCTGTCAGACGGAACT
GGGGCTTAATAACACTCCAACCTCAGCCAGATTCTTCAAATTTGGCTGGT
TGTTACATAACTttagacggaaatccgtctgacGGAAGAACTTTGAACAC
TGAGCAAATGTTCGACGCAGGAATCTTTGTAGAGCAGACCTATGTTTGAG
AgatgagagattttcaaacttttcttagatttAACCATTCGTGCATCTTG
GTTGGGGCTTTAAATGACTCAAACGATATATTTTGATagcttttgaaata
ttcatcAAATGGACTTGAAAATTTAGCAAGTTTTGTAAACCAAATGAGAA
TTGGTATTTTCTTGGAGAAATGTGACACCAAACAATTTTTCATTTAGTTA
TCAACTGTTTTGCTCTAAAGTTGGGACGTATGGCAAATAGCTTTGGGGTA
CAAGACCATTTTTTGTCACCTGAATCTTGATTGTATGTTTTTCTCGTGAA
TAATGAaaggttttgtttaaaaatgtcaaaaacgaAAATGTCACTTTAAA
ATCAGAGCCTGCAAAACATTTAAATTCCTACCCAAATCACAAATTCAAAT
GGAAAATTGTCCTCAATGCCCCAAAGAATTGGAGAACTCTTATTAAAAAT
CTTGAAGCATCTTTTATTGCTCTCAAGAAACCTGGActtaatgaccaatt
agatTCATCAAAATTACTGCTTTTTAGAAATGGAGTCACGTAGATATTTT
ATgcactttcttttgttttaagaatgttttaatcaattttaattactctc
gaaaaaactgaattttttagATGTAGATGGAAATTTGTGTAATCTGATAG
AACACTTGTATTTTTATAAGCTTGAGAATGGTGATACCACCAAAATATAT
TGCTTgaccatttttaaattttaaacgttttgtttaaactttttaagaaa
tGCGGAATGAAGAGCCCCGTGTAAATTTTCTTATACATCTGGACTACTTC
CGCCCAACGCGTGGATAAAAATGGTGCAGAAGTAACCGTCACTTCTAAGA
AATTTAATCAATTGAAAGAGGGTGGTTTACTTCCGCCCAACGCCATTTCA
TCCTCGTAAAACTCAATCGCTGAGGGATACTTCGAGCTGAAGCAACAAGA
AGAAAACAAGAACGAAGACGCAAAATCTGTTCAAGCCCTCCTCGAACTAG
CAAAAGGTGACGACTTTTGGATCATTTCAAAAgagcttaa Coding sequence (CDS) from alignment at sc0000385:135553..137992 >TCONS_00021402 ID=TCONS_00021402|Name=TCONS_00021402|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000385:135553..137992 (Clytia hemisphaerica)
ATGAAACCAAACAATGTTTCCTACTCAAAGATCTTACCTATTGCAACTGA
CACACCAAGACAAAGTGACCCTGACATAACTGGTTACAGACTCATTGATG
TTGAGATACTATCGCAAACACTGAAGGCGCTCAGTTGCCCGGAATGCAAA
TGTGAGCATTTTATGCTGCACGAGAGATTTGCAGAAAAAGGGGTTTCTTC
TGCGTTATATATGAAGTGTGAAGTATGTGACTATGAAAAGGAATTCAATA
CATCAAAAACTTACTCAAGTAAACAGACTTATGACATAAACTCTCGCATG
ATTTATGCTATGCGATCTATTGGACGAGGCTATTCTGTCATTGAGAAGTT
TGCAACTTACCGACGCCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021402-exon-sc0000385-1491911889:135553..137992 | TCONS_00021402-exon-sc0000385-1491911889:135553..137992 | Clytia hemisphaerica | exon |
| TCONS_00021402-exon-sc0000385-1510915933:135553..137992 | TCONS_00021402-exon-sc0000385-1510915933:135553..137992 | Clytia hemisphaerica | exon |
| TCONS_00021402-exon-sc0000385-1575043694:135553..137992 | TCONS_00021402-exon-sc0000385-1575043694:135553..137992 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:135553..137992 . |
Blast
The following BLAST results are available for this feature:
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