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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021404 ID=TCONS_00021404|Name=TCONS_00021404|organism=Clytia hemisphaerica|type=transcript|length=1699bp
aaaaaacatcaaattgagAAAAACGCGTTAACAGTTTAAAGAGTACtccg
tttttgaaaaattcttagaaaCACGAGCAAATGAACATGTTCTTTCTGGC
AACTCCTTCGTTGTGAATTAAATGCAGAGCCTCGCGTAGATCCTTTATGA
TTCGTTTGCCCGATTTAGGTGTTTCTAATTCATATACATAGTGTCCTTTC
TTCATTACTTTTCTCGTTAAAAATCTCTCGTTTTTACCGCTATCCACTCG
TTCAACTCGCTGTTCTTTCTGCTGCTCACTTGACTTTCTGCTCTTCTGTT
CGGTTCTGAATAACGATATCTTTTCCGAAACCCCACTTCCCAACCCAGCT
TTAGTTGGGTTTTCCACAGGCTCCGGAGTAGTCGCCTTTTGGGTGACTTT
CCCAGGCAGAGATTGGACTACGGTTTCCCCTCCCTCCCCGAGAACAGAGC
TGATAGACTTCTCGCAATAGAAGTATTTTGCAGGGTCCGAAAATTTCAAA
GAGATTATGTGATCATCAAGATCGATAAAGTTTGGTGACATGGTGCCATT
TGTAATTGAGAATCTTGCAAGGAGGTTCGGGCCGTTGAACTCTCCTTGTT
CTAAAGAATGGATTTTGCTTCGTGTGACGTGTTTAGTTGTCCGAATTTTG
TTAGGAATTCCAATAGCTCTTTCTCATTTCCAGTATAATTCCCTGGGACT
TGTAGCAGGCTGATAGTCCATGAAGGACTCTTCAGGTCGCTTTTTCTGAG
GGTGTATGCCGCCTGCCTTGTGCCCTTGGCGTTGATAGGGGCGTTCAAAG
AAATCTCTTGCCCAAAGTTCATTCGACCGCAAGGTGTTATGTGCAGAGTC
ACTCTTAAGTTACGTGAAACATGTAATGAAAGAATATCTTCTTGACGTAT
CTTGCCCTCTAGCCTGTAATATACTATGGATTCAAAAAAGCCTTCATCCT
TGTGTTTGTAGGTATTTTTTGGCAATGTTCCCTCGTACTGGagcatttca
atttcattgtgACGTTTAGTTCTTATTAATGTCATTGTTTATATGTTAAT
TCACTCACCGAGGTTCGTCTGTTTCTTCACCGCGAACCATAAGTGATTTA
CCTCACGGAAAATCAGCTCGGGCCAGTCTGACAGTCCCAGTGGACCGCTG
GCCGCACCAAGGGCCTTGATATAAAAGTAGAGCACTTGTGGTGTGACCTC
CGGTCCAACCGGTGCAGGTTTCTTCTTTCTTTACTTCGCTTTTCCCGGCT
CTCCAGCCGGGTTTTTAATTTCTGCACGATGCAGAACAACCGGGTTTCGG
ACAGTCTCAATTGCTTAATGGTATTACTATCGAGAAGTCAGTATAAACAG
CCAAACAGTCAGAACATTATAAGACCCTATAAGCTATATAAAGTTATGGA
AAATATCCTGCTTCATAAACAgtcctttctttttcttcagcaGTGTCCTG
AGCTGAATTTTTCAGCCCACGAATGACTTTACGCCTCTTCTTGGCTGCGT
CCTGTGACTTATAGTTTGCGAAGTAAAGCCGCTTACGATTAATGTTTGCA
CAGTGCTTAGTGGTACAACGGCCAGGAATTATACTAAGTTTCTCATATAT
CAAGCAAGAACTATTTTATTGAAACGAGCAATAGCATCATATGTGGCCAA
TTTCAAAGAAGGTAATGTGACATAAGTTGATTTTGGTAATCGTTCCCAA Run BLAST on NCBI protein sequence of TCONS_00021404-protein >TCONS_00021404-protein ID=TCONS_00021404-protein|Name=TCONS_00021404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MSPNFIDLDDHIISLKFSDPAKYFYCEKSISSVLGEGGETVVQSLPGKVT
QKATTPEPVENPTKAGLGSGVSEKISLFRTEQKSRKSSEQQKEQRVERVD
SGKNERFLTRKVMKKGHYVYELETPKSGKRIIKDLREALHLIHNEGVARK
NMFICSCF Run BLAST on NCBI transcript from alignment at sc0000385:139729..141427 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021404 ID=TCONS_00021404|Name=TCONS_00021404|organism=Clytia hemisphaerica|type=transcript|length=1699bp|location=Sequence derived from alignment at sc0000385:139729..141427 (Clytia hemisphaerica)
TTGGGAACGATTACCAAAATCAACTTATGTCACATTACCTTCTTTGAAAT
TGGCCACATATGATGCTATTGCTCGTTTCAATAAAATAGTTCTTGCTTGA
TATATGAGAAACTTAGTATAATTCCTGGCCGTTGTACCACTAAGCACTGT
GCAAACATTAATCGTAAGCGGCTTTACTTCGCAAACTATAAGTCACAGGA
CGCAGCCAAGAAGAGGCGTAAAGTCATTCGTGGGCTGAAAAATTCAGCTC
AGGACACtgctgaagaaaaagaaaggacTGTTTATGAAGCAGGATATTTT
CCATAACTTTATATAGCTTATAGGGTCTTATAATGTTCTGACTGTTTGGC
TGTTTATACTGACTTCTCGATAGTAATACCATTAAGCAATTGAGACTGTC
CGAAACCCGGTTGTTCTGCATCGTGCAGAAATTAAAAACCCGGCTGGAGA
GCCGGGAAAAGCGAAGTAAAGAAAGAAGAAACCTGCACCGGTTGGACCGG
AGGTCACACCACAAGTGCTCTACTTTTATATCAAGGCCCTTGGTGCGGCC
AGCGGTCCACTGGGACTGTCAGACTGGCCCGAGCTGATTTTCCGTGAGGT
AAATCACTTATGGTTCGCGGTGAAGAAACAGACGAACCTCGGTGAGTGAA
TTAACATATAAACAATGACATTAATAAGAACTAAACGTcacaatgaaatt
gaaatgctCCAGTACGAGGGAACATTGCCAAAAAATACCTACAAACACAA
GGATGAAGGCTTTTTTGAATCCATAGTATATTACAGGCTAGAGGGCAAGA
TACGTCAAGAAGATATTCTTTCATTACATGTTTCACGTAACTTAAGAGTG
ACTCTGCACATAACACCTTGCGGTCGAATGAACTTTGGGCAAGAGATTTC
TTTGAACGCCCCTATCAACGCCAAGGGCACAAGGCAGGCGGCATACACCC
TCAGAAAAAGCGACCTGAAGAGTCCTTCATGGACTATCAGCCTGCTACAA
GTCCCAGGGAATTATACTGGAAATGAGAAAGAGCTATTGGAATTCCTAAC
AAAATTCGGACAACTAAACACGTCACACGAAGCAAAATCCATTCTTTAGA
ACAAGGAGAGTTCAACGGCCCGAACCTCCTTGCAAGATTCTCAATTACAA
ATGGCACCATGTCACCAAACTTTATCGATCTTGATGATCACATAATCTCT
TTGAAATTTTCGGACCCTGCAAAATACTTCTATTGCGAGAAGTCTATCAG
CTCTGTTCTCGGGGAGGGAGGGGAAACCGTAGTCCAATCTCTGCCTGGGA
AAGTCACCCAAAAGGCGACTACTCCGGAGCCTGTGGAAAACCCAACTAAA
GCTGGGTTGGGAAGTGGGGTTTCGGAAAAGATATCGTTATTCAGAACCGA
ACAGAAGAGCAGAAAGTCAAGTGAGCAGCAGAAAGAACAGCGAGTTGAAC
GAGTGGATAGCGGTAAAAACGAGAGATTTTTAACGAGAAAAGTAATGAAG
AAAGGACACTATGTATATGAATTAGAAACACCTAAATCGGGCAAACGAAT
CATAAAGGATCTACGCGAGGCTCTGCATTTAATTCACAACGAAGGAGTTG
CCAGAAAGAACATGTTCATTTGCTCGTGtttctaagaatttttcaaaaac
ggaGTACTCTTTAAACTGTTAACGCGTTTTTctcaatttgatgtttttt Coding sequence (CDS) from alignment at sc0000385:139729..141427 >TCONS_00021404 ID=TCONS_00021404|Name=TCONS_00021404|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0000385:139729..141427 (Clytia hemisphaerica)
ATGTCACCAAACTTTATCGATCTTGATGATCACATAATCTCTTTGAAATT
TTCGGACCCTGCAAAATACTTCTATTGCGAGAAGTCTATCAGCTCTGTTC
TCGGGGAGGGAGGGGAAACCGTAGTCCAATCTCTGCCTGGGAAAGTCACC
CAAAAGGCGACTACTCCGGAGCCTGTGGAAAACCCAACTAAAGCTGGGTT
GGGAAGTGGGGTTTCGGAAAAGATATCGTTATTCAGAACCGAACAGAAGA
GCAGAAAGTCAAGTGAGCAGCAGAAAGAACAGCGAGTTGAACGAGTGGAT
AGCGGTAAAAACGAGAGATTTTTAACGAGAAAAGTAATGAAGAAAGGACA
CTATGTATATGAATTAGAAACACCTAAATCGGGCAAACGAATCATAAAGG
ATCTACGCGAGGCTCTGCATTTAATTCACAACGAAGGAGTTGCCAGAAAG
AACATGTTCATTTGCTCGTGtttctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021404-exon-sc0000385-1491911889:139729..141427 | TCONS_00021404-exon-sc0000385-1491911889:139729..141427 | Clytia hemisphaerica | exon |
| TCONS_00021404-exon-sc0000385-1510915933:139729..141427 | TCONS_00021404-exon-sc0000385-1510915933:139729..141427 | Clytia hemisphaerica | exon |
| TCONS_00021404-exon-sc0000385-1575043694:139729..141427 | TCONS_00021404-exon-sc0000385-1575043694:139729..141427 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:139729..141427 . |
Blast
The following BLAST results are available for this feature:
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