TCONS_00021408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021408
Unique NameTCONS_00021408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021408 ID=TCONS_00021408|Name=TCONS_00021408|organism=Clytia hemisphaerica|type=transcript|length=575bp
CAACTCTGGTCTCCCTGGAAGCGTGGTCTTGTCCAGCAACTGGAAGAAGT
TCAGAAATCATTCTTACATGGAATTCCATCCCTCAGACATCTTAATTATA
GGGAAAAACTCAAATCAGTAAAACTGTATAGCCTTGAAAGACGGAGAGAG
CGGTATCAAATAATTTATACCTGGAACGTCATTGAAGGCAACGTCCCAAA
TTTTGATTATGACGAAAGTAAAGGAGGCATTTCCTGCTATATAAATCAGA
GATTGGGGAGAATTTGCAAtctaaaagctgtcaatatgaaacacaaaaat
atctggagGGGAAGTCTTTCCCAAGAAAGCCCTCGATTATTCAACAACCT
TCTCAGACCAATAAGAGATTTGACAAACTGCCCCAAAGAAGTATTCAAAA
AACACTTAGACACCTTCCTCACAACTGTTCCGGATGAACCTCTGCTTGCC
CACTATTTTAACCTTAGGCAAGCTGACTCCAACAGCCTCAAGGAAATGTC
GAAGCATTGGACTCAACGAGTTGAGCTGTTCAAGCAGAAGCCAAAAGGTA
GGTATgtctctatttctatttctat
Run BLAST on NCBI

transcript from alignment at sc0000385:189235..189809

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021408 ID=TCONS_00021408|Name=TCONS_00021408|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at sc0000385:189235..189809 (Clytia hemisphaerica)
atagaaatagaaatagagacATACCTACCTTTTGGCTTCTGCTTGAACAG
CTCAACTCGTTGAGTCCAATGCTTCGACATTTCCTTGAGGCTGTTGGAGT
CAGCTTGCCTAAGGTTAAAATAGTGGGCAAGCAGAGGTTCATCCGGAACA
GTTGTGAGGAAGGTGTCTAAGTGTTTTTTGAATACTTCTTTGGGGCAGTT
TGTCAAATCTCTTATTGGTCTGAGAAGGTTGTTGAATAATCGAGGGCTTT
CTTGGGAAAGACTTCCCctccagatatttttgtgtttcatattgacagct
tttagaTTGCAAATTCTCCCCAATCTCTGATTTATATAGCAGGAAATGCC
TCCTTTACTTTCGTCATAATCAAAATTTGGGACGTTGCCTTCAATGACGT
TCCAGGTATAAATTATTTGATACCGCTCTCTCCGTCTTTCAAGGCTATAC
AGTTTTACTGATTTGAGTTTTTCCCTATAATTAAGATGTCTGAGGGATGG
AATTCCATGTAAGAATGATTTCTGAACTTCTTCCAGTTGCTGGACAAGAC
CACGCTTCCAGGGAGACCAGAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011993XLOC_011993Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021408-exon-sc0000385-1491911889:189235..189809TCONS_00021408-exon-sc0000385-1491911889:189235..189809Clytia hemisphaericaexon
TCONS_00021408-exon-sc0000385-1510915933:189235..189809TCONS_00021408-exon-sc0000385-1510915933:189235..189809Clytia hemisphaericaexon
TCONS_00021408-exon-sc0000385-1575043694:189235..189809TCONS_00021408-exon-sc0000385-1575043694:189235..189809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:189235..189809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66362	1.16692	0.930069	1.81462	2.86795	1.79102	2.84062	3.73392	1.78641	0.822209	1.80235	1.5874	1.14898	2.30844	0.728356	0.290114	0.654601	0.601127	0.43738	0.572492	0.885388	0.617933	0.217116	0	1.29483	2.11024	0.581635	0.642825	0.515625	0.219999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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