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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021409 ID=TCONS_00021409|Name=TCONS_00021409|organism=Clytia hemisphaerica|type=transcript|length=3550bp
aataatacaaaaacgGGTAAAGGCTACTATGCCCGGAAAGCTTTTTGCTT
TAATGTAGCCCTACCCACTGAGTAATATTTATTTAGTGGCTGTAATTTTT
GTTTGGTCAACTCTGGTGATATCAACATCTTCTCACTACTGGATGGCACA
AATCAATCTCAGTTCTGGCTATTAAAGACTGAATACCACAACAAGCTTTT
ACACACCAGGTTAGCTCTGGACGATTGAGGTATAATATTATTTCATTACT
TCCCTATCAAGCCAACGTTTCAGTCATTACCATATATCCCAAGGGTCCTG
TGGCTGGTCACCCAGGCATTTTGCTAAATCCTGAGCAGCAGCTGCACATG
ACAGTGAATTTGGGTTCCCATGTGCAGCTGATCAGGTATCTATTATCCTG
TTGTTTTCCTTGTGAACCACTTGAAACCAACTTTTAATACATTCGAGCGT
CTCAAGTTAAGTTTTTTCAATcaggggggggtcttgcagttactccttga
cactatgtggattaactgcaattttggacattttctacagacaccaccac
ccttgcagttattccatagtgtactaactgattttaccctcaaaattggt
gtataccacccccaaaaatgccaaatttggcaattttttcactgaattcc
tcatttttgataccattttactgggtacgtcttattaacgagcgttcaag
agttaaatatctcaatcattttccaagtttgttaaaatatctttccttga
ttgacctaaaattttaagtaaaaaaattgaaaaatgtgctcacttagtac
accatatcctaccaaaatcgacaatttttggcttaggcaccacccatgtt
gcagttagtccactggtggagtaactgttttcccaaattttggtttgtat
accaccacggtagtaattgtcatagtgtttatataataactgcatgaccc
ccccctgttTCAATCTCTGATTTGTACATAATCATGTCACTGAATCAACA
TTCCGGCGCTGCACCAAGTAGTGATGTTTCAGAAAATGTGATTGAAACCT
TGAAGAGAGCTCTTGCTGGTCTTGTGGAGAATGCTCCTACTGACGTTATC
AAAAATTGCTTACGGATGTACAACACTGAACTTCCGACCAAAGACAACAT
CAAAGCACTTAAATCATGCCGCAAATCTCCAATCATTAAAACCCTTAACT
ATCTCACAACCTCTTCATCATCATTGCCATCTAACAACCTTAACAAGGAT
GATGCAATCCACCTATTATGTTTgaagatcaaaaaaattttcctagaTGT
ATGCCAGATTTGTCAAGAATCATATTCATGCAAACTCAATGACAAACCAC
TCATTAGCTGTGGTGCGTGTGGTCAAGAAGTGCACCGGCCATGCTATCTT
AAACTTCTGATAAGCATGAATCTTTTGAATAAACATGAGAAATTATGTAA
TCTCATCTTTAAAATCCCTGGATTTTGCTATCTATGCCCGACATGTCAAG
ACGAAAACATAAATTTTACTCACAAAAATGAAACAGATGAAGTACATCAA
GCTCAAATAACGAATTCACTTACGCAGATCACTGAAGCTGTTGAAGCCAC
TGAATCTTTCTTAAATGGAACCTAACCCACTCCAAGAAGGACACTCCTTC
ACATTCCAATCACCCCAGATATTATTATCGACAGACCCTCGAATAAGATT
GTTGATGAAATATACCTGGGTAGGACTAATTtcctaaaatctaaatttta
acGCAATTTACAAAACAACGCAACCTTATCTTCGGATAATACTACAACCA
AGGACAAAGTCTCTGATGAAACTCCAGTTTGTAACTTTTACAAGAAAGGA
AAATGTAAATATGGCATCACAGGCAAAGATTGCCGATTCAAGCATCCAAA
AATCTGTACCAAGTTACTGAGACATGGTAATAAATCCCCAAAAGGCTGTA
ATGCTGGCACAAAATACAACACGTTTCATCCACGTATGTGTTCTTCATCG
ATCAGAAAAGGTGAATGTTTTAACACAAATTGCACTTTTACTCATGTCAA
GGGGACTAAAAGGGACCCAGTACTAAAGAACCATACAAACACAGAACAAT
CATTggattttctgaaaatcttaGACAATTTTCGGACAGAAATGATATCA
ATGATCACTACCAATCTGAATGTACGAAATATTCAGCAACCGTCCTGAAC
TTTACATCAGAAATACCCACACCAATTTCACCCCCGTCTTCAGGAATATT
CACTCAACCAAAGCAATTTTCACCACAACAAACAAGGGATACCACATCAA
TgaatactttttcttttatgaatatTCATGTCCCCAGACCACTCAATCAT
CAGTTCCTCTACTGGCATCAATTCTTCATTCTGAGAACCACATTTTTATA
GGCCTAACTGAGACATGGCTATCATCTTTGCACAAGAAAGCAGAGCTTGA
AATTGAGGGATATGAGCTTTTTCGTAAGGATAGAAATTGCATCAAATCCA
AATATGGAAGACATGTCGCATTTTATCTTCGAAGCGACGTATCTCCAATG
TTTGAGCCAAtacttgaattttcaaatggTGTCAATGAAGCTCTACTACT
TCATTCAAAAAACCTTAACTTTATTCTTGGTGTCATTTAGAGACAGCCAA
CAAATATTCTGCACAAATCAGCAGCTCCGGAATTCTTGGACCTTATCTCA
GCAATGCAGGACATCATCGAAACAATCGAACGAAATACCCCAGATATTTA
TCTATGTGGTGATTCTAATATACCCCACACCATAAAAAATGACTCTTACA
TACCATCAATTAGTTGCAACAAACAACTTCTAGatgttttaaacaatttt
aCTTCAATTTTAAACTTGAACCAGATGATCCATAAACCTACTCATTCTAA
TGGCAATATATTAGACTTCTTACTGACTAATAACTCTGATTTAATCTTCA
ACTACCTATGCACACCAACTGCTCTCTCAGATCACTTTATCATTGATGTT
ACAAGCCATCTGAACTTTTTTATGACTGAAAACAactataataataacaa
taataaaaatttaatcagTGCTTTTGATAGTTTTAACTTCTATTATGATC
AAATTAATTGGGCTAGCatcaatgaaaatttcaaagtcactGACTGgcac
aaaattttgaatccacTTGATTTAGACCCTGACGCCCAATATGATGCTTT
TATCAAACAATGCATATTCATTATATCTTCAAATAATGTacctccaaaaa
tattttcatccaaGAAGAAACGCAAGCCAAGAGACAGGCGGATTTTAAtg
cgaaaaagaaagaaactgagaaaaagatttcaaaatcttaaaactacaga
aaaacttgttgaaattgaagtgCTACTTCAAAAATCCTCAAGCAACCTCT
AAAATCAAATCCAACCCAAAATTCTTTTACTCGTACGCTAATCGCttctc
gaaatctaaaccaAAAATTGGACCCTTAATCAATCCAAACACTAACAAAT
TGACTAATGATCCCCTTTTGATGGCCCATATCCTACAAAACTAATACAAG Run BLAST on NCBI protein sequence of TCONS_00021409-protein >TCONS_00021409-protein ID=TCONS_00021409-protein|Name=TCONS_00021409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MQDIIETIERNTPDIYLCGDSNIPHTIKNDSYIPSISCNKQLLDVLNNFT
SILNLNQMIHKPTHSNGNILDFLLTNNSDLIFNYLCTPTALSDHFIIDVT
SHLNFFMTENNYNNNNNKNLISAFDSFNFYYDQINWASINENFKVTDWHK
ILNPLDLDPDAQYDAFIKQCIFIISSNNVPPKIFSSKKKRKPRDRRILMR
KRKKLRKRFQNLKTTEKLVEIEVLLQKSSSNL Run BLAST on NCBI transcript from alignment at sc0000385:190726..194275 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021409 ID=TCONS_00021409|Name=TCONS_00021409|organism=Clytia hemisphaerica|type=transcript|length=3550bp|location=Sequence derived from alignment at sc0000385:190726..194275 (Clytia hemisphaerica)
CTTGTATTAGTTTTGTAGGATATGGGCCATCAAAAGGGGATCATTAGTCA
ATTTGTTAGTGTTTGGATTGATTAAGGGTCCAATTTTtggtttagatttc
gagaaGCGATTAGCGTACGAGTAAAAGAATTTTGGGTTGGATTTGATTTT
AGAGGTTGCTTGAGGATTTTTGAAGTAGcacttcaatttcaacaagtttt
tctgtagttttaagattttgaaatctttttctcagtttctttctttttcg
caTTAAAATCCGCCTGTCTCTTGGCTTGCGTTTCTTCttggatgaaaata
tttttggaggtACATTATTTGAAGATATAATGAATATGCATTGTTTGATA
AAAGCATCATATTGGGCGTCAGGGTCTAAATCAAgtggattcaaaatttt
gtgcCAGTCagtgactttgaaattttcattgatGCTAGCCCAATTAATTT
GATCATAATAGAAGTTAAAACTATCAAAAGCActgattaaatttttatta
ttgttattattatagtTGTTTTCAGTCATAAAAAAGTTCAGATGGCTTGT
AACATCAATGATAAAGTGATCTGAGAGAGCAGTTGGTGTGCATAGGTAGT
TGAAGATTAAATCAGAGTTATTAGTCAGTAAGAAGTCTAATATATTGCCA
TTAGAATGAGTAGGTTTATGGATCATCTGGTTCAAGTTTAAAATTGAAGt
aaaattgtttaaaacatCTAGAAGTTGTTTGTTGCAACTAATTGATGGTA
TGTAAGAGTCATTTTTTATGGTGTGGGGTATATTAGAATCACCACATAGA
TAAATATCTGGGGTATTTCGTTCGATTGTTTCGATGATGTCCTGCATTGC
TGAGATAAGGTCCAAGAATTCCGGAGCTGCTGATTTGTGCAGAATATTTG
TTGGCTGTCTCTAAATGACACCAAGAATAAAGTTAAGGTTTTTTGAATGA
AGTAGTAGAGCTTCATTGACAccatttgaaaattcaagtaTTGGCTCAAA
CATTGGAGATACGTCGCTTCGAAGATAAAATGCGACATGTCTTCCATATT
TGGATTTGATGCAATTTCTATCCTTACGAAAAAGCTCATATCCCTCAATT
TCAAGCTCTGCTTTCTTGTGCAAAGATGATAGCCATGTCTCAGTTAGGCC
TATAAAAATGTGGTTCTCAGAATGAAGAATTGATGCCAGTAGAGGAACTG
ATGATTGAGTGGTCTGGGGACATGAatattcataaaagaaaaagtattcA
TTGATGTGGTATCCCTTGTTTGTTGTGGTGAAAATTGCTTTGGTTGAGTG
AATATTCCTGAAGACGGGGGTGAAATTGGTGTGGGTATTTCTGATGTAAA
GTTCAGGACGGTTGCTGAATATTTCGTACATTCAGATTGGTAGTGATCAT
TGATATCATTTCTGTCCGAAAATTGTCtaagattttcagaaaatccAATG
ATTGTTCTGTGTTTGTATGGTTCTTTAGTACTGGGTCCCTTTTAGTCCCC
TTGACATGAGTAAAAGTGCAATTTGTGTTAAAACATTCACCTTTTCTGAT
CGATGAAGAACACATACGTGGATGAAACGTGTTGTATTTTGTGCCAGCAT
TACAGCCTTTTGGGGATTTATTACCATGTCTCAGTAACTTGGTACAGATT
TTTGGATGCTTGAATCGGCAATCTTTGCCTGTGATGCCATATTTACATTT
TCCTTTCTTGTAAAAGTTACAAACTGGAGTTTCATCAGAGACTTTGTCCT
TGGTTGTAGTATTATCCGAAGATAAGGTTGCGTTGTTTTGTAAATTGCgt
taaaatttagattttaggaAATTAGTCCTACCCAGGTATATTTCATCAAC
AATCTTATTCGAGGGTCTGTCGATAATAATATCTGGGGTGATTGGAATGT
GAAGGAGTGTCCTTCTTGGAGTGGGTTAGGTTCCATTTAAGAAAGATTCA
GTGGCTTCAACAGCTTCAGTGATCTGCGTAAGTGAATTCGTTATTTGAGC
TTGATGTACTTCATCTGTTTCATTTTTGTGAGTAAAATTTATGTTTTCGT
CTTGACATGTCGGGCATAGATAGCAAAATCCAGGGATTTTAAAGATGAGA
TTACATAATTTCTCATGTTTATTCAAAAGATTCATGCTTATCAGAAGTTT
AAGATAGCATGGCCGGTGCACTTCTTGACCACACGCACCACAGCTAATGA
GTGGTTTGTCATTGAGTTTGCATGAATATGATTCTTGACAAATCTGGCAT
ACAtctaggaaaatttttttgatcttcAAACATAATAGGTGGATTGCATC
ATCCTTGTTAAGGTTGTTAGATGGCAATGATGATGAAGAGGTTGTGAGAT
AGTTAAGGGTTTTAATGATTGGAGATTTGCGGCATGATTTAAGTGCTTTG
ATGTTGTCTTTGGTCGGAAGTTCAGTGTTGTACATCCGTAAGCAATTTTT
GATAACGTCAGTAGGAGCATTCTCCACAAGACCAGCAAGAGCTCTCTTCA
AGGTTTCAATCACATTTTCTGAAACATCACTACTTGGTGCAGCGCCGGAA
TGTTGATTCAGTGACATGATTATGTACAAATCAGAGATTGAaacaggggg
gggtcatgcagttattatataaacactatgacaattactaccgtggtggt
atacaaaccaaaatttgggaaaacagttactccaccagtggactaactgc
aacatgggtggtgcctaagccaaaaattgtcgattttggtaggatatggt
gtactaagtgagcacatttttcaatttttttacttaaaattttaggtcaa
tcaaggaaagatattttaacaaacttggaaaatgattgagatatttaact
cttgaacgctcgttaataagacgtacccagtaaaatggtatcaaaaatga
ggaattcagtgaaaaaattgccaaatttggcatttttgggggtggtatac
accaattttgagggtaaaatcagttagtacactatggaataactgcaagg
gtggtggtgtctgtagaaaatgtccaaaattgcagttaatccacatagtg
tcaaggagtaactgcaagacccccccctgATTGAAAAAACTTAACTTGAG
ACGCTCGAATGTATTAAAAGTTGGTTTCAAGTGGTTCACAAGGAAAACAA
CAGGATAATAGATACCTGATCAGCTGCACATGGGAACCCAAATTCACTGT
CATGTGCAGCTGCTGCTCAGGATTTAGCAAAATGCCTGGGTGACCAGCCA
CAGGACCCTTGGGATATATGGTAATGACTGAAACGTTGGCTTGATAGGGA
AGTAATGAAATAATATTATACCTCAATCGTCCAGAGCTAACCTGGTGTGT
AAAAGCTTGTTGTGGTATTCAGTCTTTAATAGCCAGAACTGAGATTGATT
TGTGCCATCCAGTAGTGAGAAGATGTTGATATCACCAGAGTTGACCAAAC
AAAAATTACAGCCACTAAATAAATATTACTCAGTGGGTAGGGCTACATTA
AAGCAAAAAGCTTTCCGGGCATAGTAGCCTTTACCcgtttttgtattatt
Coding sequence (CDS) from alignment at sc0000385:190726..194275 >TCONS_00021409 ID=TCONS_00021409|Name=TCONS_00021409|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at sc0000385:190726..194275 (Clytia hemisphaerica)
TTAGAGGTTGCTTGAGGATTTTTGAAGTAGcacttcaatttcaacaagtt
tttctgtagttttaagattttgaaatctttttctcagtttctttcttttt
cgcaTTAAAATCCGCCTGTCTCTTGGCTTGCGTTTCTTCttggatgaaaa
tatttttggaggtACATTATTTGAAGATATAATGAATATGCATTGTTTGA
TAAAAGCATCATATTGGGCGTCAGGGTCTAAATCAAgtggattcaaaatt
ttgtgcCAGTCagtgactttgaaattttcattgatGCTAGCCCAATTAAT
TTGATCATAATAGAAGTTAAAACTATCAAAAGCActgattaaatttttat
tattgttattattatagtTGTTTTCAGTCATAAAAAAGTTCAGATGGCTT
GTAACATCAATGATAAAGTGATCTGAGAGAGCAGTTGGTGTGCATAGGTA
GTTGAAGATTAAATCAGAGTTATTAGTCAGTAAGAAGTCTAATATATTGC
CATTAGAATGAGTAGGTTTATGGATCATCTGGTTCAAGTTTAAAATTGAA
GtaaaattgtttaaaacatCTAGAAGTTGTTTGTTGCAACTAATTGATGG
TATGTAAGAGTCATTTTTTATGGTGTGGGGTATATTAGAATCACCACATA
GATAAATATCTGGGGTATTTCGTTCGATTGTTTCGATGATGTCCTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021409-exon-sc0000385-1491911889:190726..194275 | TCONS_00021409-exon-sc0000385-1491911889:190726..194275 | Clytia hemisphaerica | exon |
| TCONS_00021409-exon-sc0000385-1510915933:190726..194275 | TCONS_00021409-exon-sc0000385-1510915933:190726..194275 | Clytia hemisphaerica | exon |
| TCONS_00021409-exon-sc0000385-1575043694:190726..194275 | TCONS_00021409-exon-sc0000385-1575043694:190726..194275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:190726..194275 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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