TCONS_00021420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021420
Unique NameTCONS_00021420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021420 ID=TCONS_00021420|Name=TCONS_00021420|organism=Clytia hemisphaerica|type=transcript|length=338bp
TCATAATCCTTAGTTGCGCAGGCCAAAGATTAATACaacaatttataatt
tttccCCGAGGTCGATGCCAAACCACTGCTGGAAAGTGGGAGATCTAATT
CCTGGTGAAAGCTCAGAAGAAGCAACAACGAAAGTTTTTTagttcaaatt
ttgaattcgataaataatgataaaacaacaacaataaaaataataacgGT
GTCCGCGTCCGGGACGTCGACGTAGTGTTTTCCATGGTAAACACTACTGG
AGTTTTTTGTTCCCTCTGCGGGGATACTCCAACCCCGCAGTTTTCCATTC
TACGGGTTTACATTCAGCATGCCAATTTCATATGTTAA
Run BLAST on NCBI

transcript from alignment at sc0000385:427333..427670

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021420 ID=TCONS_00021420|Name=TCONS_00021420|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at sc0000385:427333..427670 (Clytia hemisphaerica)
TTAACATATGAAATTGGCATGCTGAATGTAAACCCGTAGAATGGAAAACT
GCGGGGTTGGAGTATCCCCGCAGAGGGAACAAAAAACTCCAGTAGTGTTT
ACCATGGAAAACACTACGTCGACGTCCCGGACGCGGACACcgttattatt
tttattgttgttgttttatcattatttatcgaattcaaaatttgaactAA
AAAACTTTCGTTGTTGCTTCTTCTGAGCTTTCACCAGGAATTAGATCTCC
CACTTTCCAGCAGTGGTTTGGCATCGACCTCGGggaaaaattataaattg
ttGTATTAATCTTTGGCCTGCGCAACTAAGGATTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012005XLOC_012005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021420-exon-sc0000385-1491911889:427333..427670TCONS_00021420-exon-sc0000385-1491911889:427333..427670Clytia hemisphaericaexon
TCONS_00021420-exon-sc0000385-1510915933:427333..427670TCONS_00021420-exon-sc0000385-1510915933:427333..427670Clytia hemisphaericaexon
TCONS_00021420-exon-sc0000385-1575043694:427333..427670TCONS_00021420-exon-sc0000385-1575043694:427333..427670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:427333..427670 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10007	0.268186	2.17973	4.87435	0	0	0.70716	0.993051	0.231753	0	0	0.213739	0.781556	0.7598	1.40548	1.26263	0.412911	0.846441	0.584702	0.305924	0.265904	0.778191	1.26132	0.573363	0.104343	0.527052	0	0	0.32549	0.622001
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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