TCONS_00021426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021426
Unique NameTCONS_00021426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021426 ID=TCONS_00021426|Name=TCONS_00021426|organism=Clytia hemisphaerica|type=transcript|length=822bp
GTCAATGTGGAGTACCGTCTTTTGACGTTGCAATCGCTATCGAAGTAAAA
AAGATCACCAATCAAAATCTATGGGAAGTTACAACAGACTTTGTCCATAA
GATTGTCACCAAAATGTCTTCCATACATACCAATGTCAATTCTGGATTAG
TTTTATTCAACGATAAAGCACATTCGCTACTCAAAGTCTCCAAACATGGT
CCTGATTCTTTTAAAAGCCACCTTAAAAGAATCTCAAACTATCAACAATC
TGATGTTTCCGGAATAACCAATACTTTGGATTTCGTATACAATGACTTCC
TGACAGAGAAATATGGATCTTTGAGTAAACACAAGATCTTGATTGCATTT
ACTGATGAGAGAATTACTGATGACCAGCTGGCTGCTGTCCAAAGAAATTA
TCCACAGGAACGTGTGTTATTCTTCAATGTCATTCTGAAGTACACAAAGC
AAGATGTTGGTGTATCCGATTTTGGTGTCGAGGAAAGTATCCAATCAGTT
TATTCATTATCTGAATTGACTGAGCTTACTGGACGGATGACTGGTGAAAT
ACAGCATATTAACAATCATGGCTGTCATATTGATCCACGGTAATTCAAGT
TGACTCTCAGTATAAACTTTATTATATGTTATTTGaggtaattagttttt
aaatttacatatatttttcataaCTGGTTTGTAAAgatcaaaaatgaaat
ttaacatAGTAAACTTCAAATTCCAAATATAGAGAACGACAACATtgcta
gacgatgctatcgtccgtttaaattCAGTAGTAAACGGGGAAAAGAGTta
tagggcgtcagggcggtttacg
Run BLAST on NCBI

protein sequence of TCONS_00021426-protein

>TCONS_00021426-protein ID=TCONS_00021426-protein|Name=TCONS_00021426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
QCGVPSFDVAIAIEVKKITNQNLWEVTTDFVHKIVTKMSSIHTNVNSGLV
LFNDKAHSLLKVSKHGPDSFKSHLKRISNYQQSDVSGITNTLDFVYNDFL
TEKYGSLSKHKILIAFTDERITDDQLAAVQRNYPQERVLFFNVILKYTKQ
DVGVSDFGVEESIQSVYSLSELTELTGRMTGEIQHINNHGCHIDPR
Run BLAST on NCBI

transcript from alignment at sc0000385:494979..495800

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021426 ID=TCONS_00021426|Name=TCONS_00021426|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at sc0000385:494979..495800 (Clytia hemisphaerica)
cgtaaaccgccctgacgccctataACTCTTTTCCCCGTTTACTACTGaat
ttaaacggacgatagcatcgtctagcaATGTTGTCGTTCTCTATATTTGG
AATTTGAAGTTTACTatgttaaatttcatttttgatcTTTACAAACCAGt
tatgaaaaatatatgtaaatttaaaaactaattacctCAAATAACATATA
ATAAAGTTTATACTGAGAGTCAACTTGAATTACCGTGGATCAATATGACA
GCCATGATTGTTAATATGCTGTATTTCACCAGTCATCCGTCCAGTAAGCT
CAGTCAATTCAGATAATGAATAAACTGATTGGATACTTTCCTCGACACCA
AAATCGGATACACCAACATCTTGCTTTGTGTACTTCAGAATGACATTGAA
GAATAACACACGTTCCTGTGGATAATTTCTTTGGACAGCAGCCAGCTGGT
CATCAGTAATTCTCTCATCAGTAAATGCAATCAAGATCTTGTGTTTACTC
AAAGATCCATATTTCTCTGTCAGGAAGTCATTGTATACGAAATCCAAAGT
ATTGGTTATTCCGGAAACATCAGATTGTTGATAGTTTGAGATTCTTTTAA
GGTGGCTTTTAAAAGAATCAGGACCATGTTTGGAGACTTTGAGTAGCGAA
TGTGCTTTATCGTTGAATAAAACTAATCCAGAATTGACATTGGTATGTAT
GGAAGACATTTTGGTGACAATCTTATGGACAAAGTCTGTTGTAACTTCCC
ATAGATTTTGATTGGTGATCTTTTTTACTTCGATAGCGATTGCAACGTCA
AAAGACGGTACTCCACATTGAC

Coding sequence (CDS) from alignment at sc0000385:494979..495800

>TCONS_00021426 ID=TCONS_00021426|Name=TCONS_00021426|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0000385:494979..495800 (Clytia hemisphaerica)
TTACCGTGGATCAATATGACAGCCATGATTGTTAATATGCTGTATTTCAC
CAGTCATCCGTCCAGTAAGCTCAGTCAATTCAGATAATGAATAAACTGAT
TGGATACTTTCCTCGACACCAAAATCGGATACACCAACATCTTGCTTTGT
GTACTTCAGAATGACATTGAAGAATAACACACGTTCCTGTGGATAATTTC
TTTGGACAGCAGCCAGCTGGTCATCAGTAATTCTCTCATCAGTAAATGCA
ATCAAGATCTTGTGTTTACTCAAAGATCCATATTTCTCTGTCAGGAAGTC
ATTGTATACGAAATCCAAAGTATTGGTTATTCCGGAAACATCAGATTGTT
GATAGTTTGAGATTCTTTTAAGGTGGCTTTTAAAAGAATCAGGACCATGT
TTGGAGACTTTGAGTAGCGAATGTGCTTTATCGTTGAATAAAACTAATCC
AGAATTGACATTGGTATGTATGGAAGACATTTTGGTGACAATCTTATGGA
CAAAGTCTGTTGTAACTTCCCATAGATTTTGATTGGTGATCTTTTTTACT
TCGATAGCGATTGCAACGTCAAAAGACGGTACTCCACATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012011XLOC_012011Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021426-proteinTCONS_00021426-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021426-exon-sc0000385-1491911889:494979..495800TCONS_00021426-exon-sc0000385-1491911889:494979..495800Clytia hemisphaericaexon
TCONS_00021426-exon-sc0000385-1510915933:494979..495800TCONS_00021426-exon-sc0000385-1510915933:494979..495800Clytia hemisphaericaexon
TCONS_00021426-exon-sc0000385-1575043694:494979..495800TCONS_00021426-exon-sc0000385-1575043694:494979..495800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:494979..495800 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.234145	0.431725	2.30665	2.7864	1.80451	3.08093	2.69724	1.04071	3.84912	4.59696	4.56805	7.89998	1.04273	0.578913	6.89058	10.9445	3.35744	2.53835	7.16677	6.21399	7.45662	8.04128	3.49179	3.98062	10.2137	10.0135
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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