TCONS_00021429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021429
Unique NameTCONS_00021429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021429 ID=TCONS_00021429|Name=TCONS_00021429|organism=Clytia hemisphaerica|type=transcript|length=522bp
CCAGAGGGAACGACGATTTGGAGTTTATACTTGCAGCAATGCCAGTTGAT
ATCAAAAGGTTATCCATTGAAGTCTAGACTAGTTGGGCAATGTCATTCGA
GCTATGCTGATTGTGAAAGTAAACAAGGTAGCACTAACGATATCACATGT
TCAAATGATTGTATATTCACTCATGTTTCATGCTTTGGTCACTGTGAACT
AACAAATGAATGCTCCGGATCACAATATAAGTGTTTATGTTGGAAAGCTG
ACGAAAGCGCTGGATTATCATCAACACCACCAAGTGgttaatgaaaacaa
aaaatacatttaattcATCCCATCGTATATATCTTTAAGCGTTACTAAGA
TTTAGTTATATAACTTAGCGGTAAATCAACCAGTGACGTCAATCTGAAGC
TAAAAAGTAACATTTCATCCaatcaaatattatttttttacacatttttt
ttattaggaCCCAATTTATAAGAACGTTAAGGCTGAACTTTGGAAACAAA
TAAGAAGACCGTAAGAAGATTG
Run BLAST on NCBI

transcript from alignment at sc0000385:546172..546693

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021429 ID=TCONS_00021429|Name=TCONS_00021429|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0000385:546172..546693 (Clytia hemisphaerica)
CAATCTTCTTACGGTCTTCTTATTTGTTTCCAAAGTTCAGCCTTAACGTT
CTTATAAATTGGGtcctaataaaaaaaatgtgtaaaaaaataatatttga
ttGGATGAAATGTTACTTTTTAGCTTCAGATTGACGTCACTGGTTGATTT
ACCGCTAAGTTATATAACTAAATCTTAGTAACGCTTAAAGATATATACGA
TGGGATgaattaaatgtattttttgttttcattaacCACTTGGTGGTGTT
GATGATAATCCAGCGCTTTCGTCAGCTTTCCAACATAAACACTTATATTG
TGATCCGGAGCATTCATTTGTTAGTTCACAGTGACCAAAGCATGAAACAT
GAGTGAATATACAATCATTTGAACATGTGATATCGTTAGTGCTACCTTGT
TTACTTTCACAATCAGCATAGCTCGAATGACATTGCCCAACTAGTCTAGA
CTTCAATGGATAACCTTTTGATATCAACTGGCATTGCTGCAAGTATAAAC
TCCAAATCGTCGTTCCCTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012014XLOC_012014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021429-exon-sc0000385-1491911889:546172..546693TCONS_00021429-exon-sc0000385-1491911889:546172..546693Clytia hemisphaericaexon
TCONS_00021429-exon-sc0000385-1510915933:546172..546693TCONS_00021429-exon-sc0000385-1510915933:546172..546693Clytia hemisphaericaexon
TCONS_00021429-exon-sc0000385-1575043694:546172..546693TCONS_00021429-exon-sc0000385-1575043694:546172..546693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:546172..546693 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.152855	0	1.16581	0.682135	1.43274	1.77467	0.689017	0.60391	2.11075	1.48745	0	0	0	0.174428	2.87316	4.37435	0.219181	0.160364	0.259924	0	0.243392	0.760276	0	0	0.125807	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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