TCONS_00021431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021431
Unique NameTCONS_00021431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021431 ID=TCONS_00021431|Name=TCONS_00021431|organism=Clytia hemisphaerica|type=transcript|length=315bp
NGAGGATCACGATTTATTACCAGAGAATTATGAACTGTCCCTAGGCAGAC
TGAAGTCCCTAATAAAACGTCTAGAAAAGGATCCAGACCTTCTCAGGCGA
TATAACGAAATTATCCAGACACAAGTTGAAAAGGGAATGGTCGAGAAAGT
AGATGTTTCTGAAATGAACAATGCTAACAGAAAACATTACATCCCCCACC
ACGTCGTTGTCAAGCCAGACAGTACAACGACAAAGCTGAGAATCGTCTAC
GATGCATCTGCCAAAACACGAAAGGACAACAAGAGCTTGAATGAGTGTCT
TTACAGAGGACCAGT
Run BLAST on NCBI

protein sequence of TCONS_00021431-protein

>TCONS_00021431-protein ID=TCONS_00021431-protein|Name=TCONS_00021431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
EDHDLLPENYELSLGRLKSLIKRLEKDPDLLRRYNEIIQTQVEKGMVEKV
DVSEMNNANRKHYIPHHVVVKPDSTTTKLRIVYDASAKTRKDNKSLNECL
YRGP
Run BLAST on NCBI

transcript from alignment at sc0000385:550098..550412

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021431 ID=TCONS_00021431|Name=TCONS_00021431|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at sc0000385:550098..550412 (Clytia hemisphaerica)
ACTGGTCCTCTGTAAAGACACTCATTCAAGCTCTTGTTGTCCTTTCGTGT
TTTGGCAGATGCATCGTAGACGATTCTCAGCTTTGTCGTTGTACTGTCTG
GCTTGACAACGACGTGGTGGGGGATGTAATGTTTTCTGTTAGCATTGTTC
ATTTCAGAAACATCTACTTTCTCGACCATTCCCTTTTCAACTTGTGTCTG
GATAATTTCGTTATATCGCCTGAGAAGGTCTGGATCCTTTTCTAGACGTT
TTATTAGGGACTTCAGTCTGCCTAGGGACAGTTCATAATTCTCTGGTAAT
AAATCGTGATCCTCN

Coding sequence (CDS) from alignment at sc0000385:550098..550412

>TCONS_00021431 ID=TCONS_00021431|Name=TCONS_00021431|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000385:550098..550412 (Clytia hemisphaerica)
TGGTCCTCTGTAAAGACACTCATTCAAGCTCTTGTTGTCCTTTCGTGTTT
TGGCAGATGCATCGTAGACGATTCTCAGCTTTGTCGTTGTACTGTCTGGC
TTGACAACGACGTGGTGGGGGATGTAATGTTTTCTGTTAGCATTGTTCAT
TTCAGAAACATCTACTTTCTCGACCATTCCCTTTTCAACTTGTGTCTGGA
TAATTTCGTTATATCGCCTGAGAAGGTCTGGATCCTTTTCTAGACGTTTT
ATTAGGGACTTCAGTCTGCCTAGGGACAGTTCATAATTCTCTGGTAATAA
ATCGTGATCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012016XLOC_012016Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021431-proteinTCONS_00021431-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021431-exon-sc0000385-1491911889:550098..550412TCONS_00021431-exon-sc0000385-1491911889:550098..550412Clytia hemisphaericaexon
TCONS_00021431-exon-sc0000385-1510915933:550098..550412TCONS_00021431-exon-sc0000385-1510915933:550098..550412Clytia hemisphaericaexon
TCONS_00021431-exon-sc0000385-1575043694:550098..550412TCONS_00021431-exon-sc0000385-1575043694:550098..550412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:550098..550412 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.334618	0.326305	0	0	1.35375	1.78292	4.30204	5.63852	1.40988	7.684	5.76321	1.55997	1.11272	0.462228	0.380014	0.407813	0	0	1.77853	0.744442	0	0	0	0	0.359264	1.60317	0.458827	0.489673	0.742799	0.378397
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top