TCONS_00021466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021466
Unique NameTCONS_00021466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length968

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021466 ID=TCONS_00021466|Name=TCONS_00021466|organism=Clytia hemisphaerica|type=transcript|length=968bp
GAGAAAAAATGTCTAGAAATATTGGATGTTCCCAAGAGAACAATCTTTTG
CATTTCATTAACATTGAtttttaagtccattttttgttcaataagttttt
gaaagttttcatgGATCGACCCTAAAGCTCCAATGACGATTGGTATGGTG
TTGACTTTCCGACCATTCCAAAGTTGTTTTACCTCTATGGACAAGTCTAC
ATATTTCGTAACCTTTTCGTTTCGTTTTCGTGCGATGTTGGAATCAAGTG
GTACCGCTATATCTATTAGTTGGATGTCTCGAGATTGTTTATTTAGGTAT
ATGATATCGGGTTTGTTGTGGGTGACGCGTCTATCCGTTTGTACTGGGAA
ATTCCAGAGGATTTTAACGTTATCGTTTTCGAGGATAGGTTCGGGATCAT
ATTGGTACCATTTAGTGGTTGTTGGTTCGATGAATTGGTATTTTTCGGTT
TGGATTTGACGGTTTGGATTTTTTGATTGGTACGGATGGTTTTAACGCGG
GTTTTCAGTTGTTGGTTGTTGAGTTGTTGTGATTGTTCTTCGTCGATGTT
GAGTTCTCTGAGGTACGTTTCGGCTTTTTGATGGATGGACTTTGCACCTT
TGGATGTTTGTGACGTTGATACTAGCACAATAAGACGTTCTGTGGAGTTT
TTTAGATATCTGCTGTACTGGATGATCTGGTTCTTGTAAAGGTCTGTGAT
GTTGAGTAGACCTCTGCCTCCTTGTTTTCGACTGATGTATACTCGGTCAA
CGTCGCTGTTGAGGTGGAGCATATGATATTGACGTAAGGTGTTTCTCGTT
TCTCGGTCAACCTCTTCCAGTTCGGTAACTGACCAGTCAAGGACTTGGAA
TCCGTAAGACAATGCCGGTATTGCGTACGTATTTATGGCTTGAATAGTGT
TTTTACTATTGAGGGATGATTTTAAGATCTTCTTCACCCGTTGAAAGTAT
TCtgttcgaaatttattt
Run BLAST on NCBI

transcript from alignment at sc0000386:196151..197428-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021466 ID=TCONS_00021466|Name=TCONS_00021466|organism=Clytia hemisphaerica|type=transcript|length=1278bp|location=Sequence derived from alignment at sc0000386:196151..197428- (Clytia hemisphaerica)
GAGAAAAAATGTCTAGAAATATTGGATGTTCCCAAGAGAACAATCTTTTG
CATTTCATTAACATTGATTTTTAAGTCCATTTTTTGTTCAATAAGTTTTT
GAAAGTTTTCATGGATCGACCCTAAAGCTCCAATGACGATTGGTATGGTG
TTGACTTTCCGACCATTCCAAAGTTGTTTTACCTCTATGGACAAGTCTAC
ATATTTCGTAACCTTTTCGTTTCGTTTTCGTGCGATGTTGGAATCAAGTG
GTACCGCTATATCTATTAGTTGGATGTCTCGAGATTGTTTATTTAGGTAT
ATGATATCGGGTTTGTTGTGGGTGACGCGTCTATCCGTTTGTACTGGGAA
ATTCCAGAGGATTTTAACGTTATCGTTTTCGAGGATAGGTTCGGGATCAT
ATTGGTACCATTTAGTGGTTGTTGGTTCGATGAATTGGTATTTTTCGGCT
AGTAGGAGGTGGATGTAGCGGCAGACGTTGTCATGTCGTTGGGTGTATTT
GGTAGGTGCGAGGATAGGGCATCCAGAGATGACGTGGTGGATGGTTTCAG
GTTTGGTTTTACAGGCTCTGCAGGTATCGTCATTTGATGTTTTGTGGATG
TGTTTTTTGGTGTATTTGGTTGTGATGGCGTTTTCTTGAATTGCGCAGAT
GGTGGATTCTGTTGCTCGTTTGAGTGTGGAAGATCGTAGCCATGAAAGGG
ATGCGGTTTTGTCGATGTGGGGTTGTTCTAGTGTGTTGAAGAATTGGCCA
TGCATAGGTTTGGATTTGACGGTTTGGATTTTTTGATTGGTACGGATGGT
TTTAACGCGGGTTTTCAGTTGTTGGTTGTTGAGTTGTTGTGATTGTTCTT
CGTCGATGTTGAGTTCTCTGAGGTACGTTTCGGCTTTTTGATGGATGGAC
TTTGCACCTTTGGATGTTTGTGACGTTGATACTAGCACAATAAGACGTTC
TGTGGAGTTTTTTAGATATCTGCTGTACTGGATGATCTGGTTCTTGTAAA
GGTCTGTGATGTTGAGTAGACCTCTGCCTCCTTGTTTTCGACTGATGTAT
ACTCGGTCAACGTCGCTGTTGAGGTGGAGCATATGATATTGACGTAAGGT
GTTTCTCGTTTCTCGGTCAACCTCTTCCAGTTCGGTAACTGACCAGTCAA
GGACTTGGAATCCGTAAGACAATGCCGGTATTGCGTACGTATTTATGGCT
TGAATAGTGTTTTTACTATTGAGGGATGATTTTAAGATCTTCTTCACCCG
TTGAAAGTATTCTGTTCGAAATTTATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012032XLOC_012032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021466-exon-sc0000386-1575043694:196982..197428TCONS_00021466-exon-sc0000386-1575043694:196982..197428Clytia hemisphaericaexon
TCONS_00021466-exon-sc0000386-1575043694:196151..196671TCONS_00021466-exon-sc0000386-1575043694:196151..196671Clytia hemisphaericaexon
TCONS_00021466-exon-sc0000386-1510915933:196982..197428TCONS_00021466-exon-sc0000386-1510915933:196982..197428Clytia hemisphaericaexon
TCONS_00021466-exon-sc0000386-1510915933:196151..196671TCONS_00021466-exon-sc0000386-1510915933:196151..196671Clytia hemisphaericaexon
TCONS_00021466-exon-sc0000386-1491911889:196982..197428TCONS_00021466-exon-sc0000386-1491911889:196982..197428Clytia hemisphaericaexon
TCONS_00021466-exon-sc0000386-1491911889:196151..196671TCONS_00021466-exon-sc0000386-1491911889:196151..196671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:196151..197428 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.28207	0.228922	2.40304	2.09089	1.22812	1.73053	0.260421	1.2595	0.355466	0.780413	0.238115	0.833242	0.595241	0.0433852	0.336239	0.578489	0.0627784	0.0924744	0	0.651556	0	0.300488	1.34627	1.16067	0	0.263276
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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