TCONS_00021481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021481
Unique NameTCONS_00021481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021481 ID=TCONS_00021481|Name=TCONS_00021481|organism=Clytia hemisphaerica|type=transcript|length=432bp
AGATGAGTTATGAGCATTCTGAGGAAGACAAACAAAGTATTCATGAAAAG
CTTTCTTATTATATTCTTAGTCATAATATTGACCAGCATAAATTCAACAG
TGTTACTGTCTGTCATTCTCCTTCTTTTATTGACATCGATGAGTATGACC
ATTCATCATGCTTTTCTcttgtaaaatttagaaaagctgaatttactgaa
aaggaattttgtgttttggttctCTATAAAAGTTCAAGAATTCCACGTGA
TGTGTTCTGTTACAATCTTGCTCAATTTATTGAAAGATACACAATTGATA
TCATTTTAGGAGACTTCAACATGGACGGCTTTGAAatggtaacctgataa
cagattgtgtattttctggcccagtacgctgaagctctaaagacgtgggc
gaaaatatacaatctgaagaatatggtCGCGC
Run BLAST on NCBI

protein sequence of TCONS_00021481-protein

>TCONS_00021481-protein ID=TCONS_00021481-protein|Name=TCONS_00021481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MSYEHSEEDKQSIHEKLSYYILSHNIDQHKFNSVTVCHSPSFIDIDEYDH
SSCFSLVKFRKAEFTEKEFCVLVLYKSSRIPRDVFCYNLAQFIERYTIDI
ILGDFNMDGFEMVT
Run BLAST on NCBI

transcript from alignment at sc0000386:295553..295984

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021481 ID=TCONS_00021481|Name=TCONS_00021481|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0000386:295553..295984 (Clytia hemisphaerica)
GCGCGaccatattcttcagattgtatattttcgcccacgtctttagagct
tcagcgtactgggccagaaaatacacaatctgttatcaggttaccatTTC
AAAGCCGTCCATGTTGAAGTCTCCTAAAATGATATCAATTGTGTATCTTT
CAATAAATTGAGCAAGATTGTAACAGAACACATCACGTGGAATTCTTGAA
CTTTTATAGagaaccaaaacacaaaattccttttcagtaaattcagcttt
tctaaattttacaagAGAAAAGCATGATGAATGGTCATACTCATCGATGT
CAATAAAAGAAGGAGAATGACAGACAGTAACACTGTTGAATTTATGCTGG
TCAATATTATGACTAAGAATATAATAAGAAAGCTTTTCATGAATACTTTG
TTTGTCTTCCTCAGAATGCTCATAACTCATCT

Coding sequence (CDS) from alignment at sc0000386:295553..295984

>TCONS_00021481 ID=TCONS_00021481|Name=TCONS_00021481|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000386:295553..295984 (Clytia hemisphaerica)
tcaggttaccatTTCAAAGCCGTCCATGTTGAAGTCTCCTAAAATGATAT
CAATTGTGTATCTTTCAATAAATTGAGCAAGATTGTAACAGAACACATCA
CGTGGAATTCTTGAACTTTTATAGagaaccaaaacacaaaattccttttc
agtaaattcagcttttctaaattttacaagAGAAAAGCATGATGAATGGT
CATACTCATCGATGTCAATAAAAGAAGGAGAATGACAGACAGTAACACTG
TTGAATTTATGCTGGTCAATATTATGACTAAGAATATAATAAGAAAGCTT
TTCATGAATACTTTGTTTGTCTTCCTCAGAATGCTCATAACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012047XLOC_012047Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021481-proteinTCONS_00021481-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021481-exon-sc0000386-1491911889:295553..295984TCONS_00021481-exon-sc0000386-1491911889:295553..295984Clytia hemisphaericaexon
TCONS_00021481-exon-sc0000386-1510915933:295553..295984TCONS_00021481-exon-sc0000386-1510915933:295553..295984Clytia hemisphaericaexon
TCONS_00021481-exon-sc0000386-1575043694:295553..295984TCONS_00021481-exon-sc0000386-1575043694:295553..295984Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:295553..295984 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.7124	4.65799	4.37054	3.78598	2.57455	1.01722	2.49046	2.29785	1.5561	2.04752	1.01783	1.39209	0.673101	1.39806	2.41456	1.19431	2.68724	1.54616	1.60587	3.36575	4.31842	6.49389	3.38665	2.92511	1.36649	0.609779	6.60828	4.28118	5.9624	4.58379
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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