TCONS_00021487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021487
Unique NameTCONS_00021487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021487 ID=TCONS_00021487|Name=TCONS_00021487|organism=Clytia hemisphaerica|type=transcript|length=1945bp
agaaagaaacaaaaacaattcaaaatggcggtaaagaaaacagaaaacga
AATCAGTCAACAGATCACTGAGAATAATATAcaattcatccaatcagaag
tGATTGATCTTCATGGTGTCACCAAGACCTTGGTAACTAGCTCCAAATAT
TTTTTACGTCAACTAAGGAACAATGGTGGTTGGCTTCATATAACATCAGC
TATTATGGGGATATCTATGGATTCTGAACCACTCGACGGAACAGGAATCG
CTATGGAGATTGATAACCAGAACGTAGACTTCAAGCCTGATCTACAATCA
TTCTGCATTTTACCATGGCTTGAAGAAACCTCCGCCCCAACCGCCAGTAT
AATGTGTGACTTGGAATTAAAAGGGCGTGATTTAGAGTATTGGCGTGTAT
GTTGCAGACAACAATGCAAAGCACAGATTCAAAATTTGACGGCAACGGGC
TATTCATTGTTTAGTGCTTTTGAGTATGAATTTTACCTAGTTGAAAAGGG
TACATTTAAACCAATCTTTGATGTCACTAACATTTACTCAGATGTCTTTG
TTGATGAGATTAGACCTTTCGTTTACGAAACTATGAAAACATTAGATGAC
ATGGGGATCACTACTGAGATGTTTACACCCGAATTTGCACCAGGTCAACT
AGAGTTGACACTATCACCTGACTTTGGTGTTAAGAGCGTGGATAACGCGA
TGAGGTATAAGAAAGTTGTGAAAGCAATGGCAAAGAAACATGGAATGGAG
GCTTTATTTCTGTCTAAGCCTTACCCAGATGAATCTGGTTCATCGAATCA
TTTCAATCATTCCCTTTGGCATACAACAGAGAAAACAAACGCGTTTTCCG
ACCCTGATAAGCCATATAAACTATCTGCCATTTGTATGAATTGGATAGGT
GGGCTTCAAGAGCATTCTAAAGCTTTAGCTTCCTTGTTTTGGGCAAATAT
GAATTGTTTTGAGAGATGCAAACCAGGGACTTTTGCACCAACTAATAATT
CATGGGGTTTCGATAATCGTACAATCTGTTATCGGGTGAAAAATGATTCA
CCCTCTGTAACCTATGTTGAGAATCGAATCCCAGGTGCTGGTAGTAACCC
GTATCTGGTCACCGCTGGATGTCTCATTGCTGGTATGGATGGTATCAAAC
GTAATCTCAAACCTAAATCTGAGCCGTTTGTAGGAAATCTCTATGAAGTT
GATGTATTACCAGAAGGTATTGAAAGCTTGccaaaaagttttgaagaatC
TTTGAAATGTTTACAAGAAGACGAAGTTCTTTCCAAGGAACTCGGTGATG
TCTTCATAAAAGCTTTTTCAGCTCTCCGAAATGACGAAATCAAGAAAtgc
aatgaaaattttgaaaatgatgaacaAAGATTTGAGTATTATAGAAAACT
ttatggaaaatttttgtgatCTTTTTTATTGACATATTTTGTTTAGACGA
TTAGAAGTATTAAATAGGTATTTATCAATATAGTTTGGACCAGTAACAAT
TTAAATCATAGTGCAGGGGTAAatgcattgagtttcaagcccgaagggct
ataggcgaaactttaacccatctcaggcaagagaaattgaaaccacttat
ttcccatccaaaaagcgcatagaacgcgccgtaataaTGACGACGGactg
tatctagcggttcctttgtttttggaggactaaattatttgaaatttagc
gatagattttagtttcaatccggcgtttgtttAAAAACTACGTGCGGGCG
ttctagatgggaaataagtggtttcatttcccatctaggagtctcgcctc
tagcccttcgggcttgaaactcaatgcaaTGGGTAAATACACACACAAAT
CTACAAATAGGGGGATATTAATTTTCTAGAAACGTTTTGAGAAATGCAAC
ACAGCAGTTTGTCCGGTAAAATTGAATAGAAATTCTTAAGCCCAC
Run BLAST on NCBI

protein sequence of TCONS_00021487-protein

>TCONS_00021487-protein ID=TCONS_00021487-protein|Name=TCONS_00021487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
RKKQKQFKMAVKKTENEISQQITENNIQFIQSEVIDLHGVTKTLVTSSKY
FLRQLRNNGGWLHITSAIMGISMDSEPLDGTGIAMEIDNQNVDFKPDLQS
FCILPWLEETSAPTASIMCDLELKGRDLEYWRVCCRQQCKAQIQNLTATG
YSLFSAFEYEFYLVEKGTFKPIFDVTNIYSDVFVDEIRPFVYETMKTLDD
MGITTEMFTPEFAPGQLELTLSPDFGVKSVDNAMRYKKVVKAMAKKHGME
ALFLSKPYPDESGSSNHFNHSLWHTTEKTNAFSDPDKPYKLSAICMNWIG
GLQEHSKALASLFWANMNCFERCKPGTFAPTNNSWGFDNRTICYRVKNDS
PSVTYVENRIPGAGSNPYLVTAGCLIAGMDGIKRNLKPKSEPFVGNLYEV
DVLPEGIESLPKSFEESLKCLQEDEVLSKELGDVFIKAFSALRNDEIKKC
NENFENDEQRFEYYRKLYGKFL
Run BLAST on NCBI

transcript from alignment at sc0000388:28517..31047+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021487 ID=TCONS_00021487|Name=TCONS_00021487|organism=Clytia hemisphaerica|type=transcript|length=2531bp|location=Sequence derived from alignment at sc0000388:28517..31047+ (Clytia hemisphaerica)
agaaagaaacaaaaacaattcaaaatggcggtaaagaaaacagaaaacga
AATCAGTCAACAGATCACTGAGAATAATATAcaattcatccaatcagaag
tGATTGATCTTCATGGTGTCACCAAGACCTTGGTAACTAGCTCCAAATAT
TTTTTACGTCAACTAAGGAACAATGGTGGTTGGCTTCATATAACATCAGC
TATTATGGGGATATCTATGGATTCTGAACCACTCGACGGAACAGGTAATT
TCCCAGATGATTAAAAACGTTCATAACAACTATAAAACGTTAGTTGAACA
TTAAAATGATACTCTCCGTATCCTAAAATGTTTACTGTCAACGAGCGCCT
CAAAATTTAAgatcttttcaaaaacattgctaAAAACTCTTGAGATTGAA
AGTCGATTGACATTTAGTCAATACATGCAATTGCCTTGTTCGGATTAAAT
GAAATATCGAATTTGTAAGCGGTGTAACAAGTAAGAATTATAGTCGTTCG
GCAGTTCAATCGTTTTACACTCAGTATTGTTCGATAATCAATCGAATGAA
TTATCGAACAAATATGGGACCTCCTTGTATGCAACCAAGTGCTCATGAAG
AGCCctaccttcaattcacgcaatcatgcaatttttttcccgaattcacg
cattcacgcaatgtattttcgcaattcacgtaatttttgtttacgcaaag
cttttcaattcacgcattcaagcaattttttttaattttcacgcattcac
gcaagtgaaaaagcccattcacgcattcacgcaaaccacttGATTCAAAT
CTCcctaaacttttaaaatatcgTTTTCAGGAATCGCTATGGAGATTGAT
AACCAGAACGTAGACTTCAAGCCTGATCTACAATCATTCTGCATTTTACC
ATGGCTTGAAGAAACCTCCGCCCCAACCGCCAGTATAATGTGTGACTTGG
AATTAAAAGGGCGTGATTTAGAGTATTGGCGTGTATGTTGCAGACAACAA
TGCAAAGCACAGATTCAAAATTTGACGGCAACGGGCTATTCATTGTTTAG
TGCTTTTGAGTATGAATTTTACCTAGTTGAAAAGGGTACATTTAAACCAA
TCTTTGATGTCACTAACATTTACTCAGATGTCTTTGTTGATGAGATTAGA
CCTTTCGTTTACGAAACTATGAAAACATTAGATGACATGGGGATCACTAC
TGAGATGTTTACACCCGAATTTGCACCAGGTCAACTAGAGTTGACACTAT
CACCTGACTTTGGTGTTAAGAGCGTGGATAACGCGATGAGGTATAAGAAA
GTTGTGAAAGCAATGGCAAAGAAACATGGAATGGAGGCTTTATTTCTGTC
TAAGCCTTACCCAGATGAATCTGGTTCATCGAATCATTTCAATCATTCCC
TTTGGCATACAACAGAGAAAACAAACGCGTTTTCCGACCCTGATAAGCCA
TATAAACTATCTGCCATTTGTATGAATTGGATAGGTGGGCTTCAAGAGCA
TTCTAAAGCTTTAGCTTCCTTGTTTTGGGCAAATATGAATTGTTTTGAGA
GATGCAAACCAGGGACTTTTGCACCAACTAATAATTCATGGGGTTTCGAT
AATCGTACAATCTGTTATCGGGTGAAAAATGATTCACCCTCTGTAACCTA
TGTTGAGAATCGAATCCCAGGTGCTGGTAGTAACCCGTATCTGGTCACCG
CTGGATGTCTCATTGCTGGTATGGATGGTATCAAACGTAATCTCAAACCT
AAATCTGAGCCGTTTGTAGGAAATCTCTATGAAGTTGATGTATTACCAGA
AGGTATTGAAAGCTTGccaaaaagttttgaagaatCTTTGAAATGTTTAC
AAGAAGACGAAGTTCTTTCCAAGGAACTCGGTGATGTCTTCATAAAAGCT
TTTTCAGCTCTCCGAAATGACGAAATCAAGAAAtgcaatgaaaattttga
aaatgatgaacaAAGATTTGAGTATTATAGAAAACTttatggaaaatttt
tgtgatCTTTTTTATTGACATATTTTGTTTAGACGATTAGAAGTATTAAA
TAGGTATTTATCAATATAGTTTGGACCAGTAACAATTTAAATCATAGTGC
AGGGGTAAatgcattgagtttcaagcccgaagggctataggcgaaacttt
aacccatctcaggcaagagaaattgaaaccacttatttcccatccaaaaa
gcgcatagaacgcgccgtaataaTGACGACGGactgtatctagcggttcc
tttgtttttggaggactaaattatttgaaatttagcgatagattttagtt
tcaatccggcgtttgtttAAAAACTACGTGCGGGCGttctagatgggaaa
taagtggtttcatttcccatctaggagtctcgcctctagcccttcgggct
tgaaactcaatgcaaTGGGTAAATACACACACAAATCTACAAATAGGGGG
ATATTAATTTTCTAGAAACGTTTTGAGAAATGCAACACAGCAGTTTGTCC
GGTAAAATTGAATAGAAATTCTTAAGCCCAC

Coding sequence (CDS) from alignment at sc0000388:28517..31047+

>TCONS_00021487 ID=TCONS_00021487|Name=TCONS_00021487|organism=Clytia hemisphaerica|type=CDS|length=2838bp|location=Sequence derived from alignment at sc0000388:28517..31047+ (Clytia hemisphaerica)
agaaagaaacaaaaacaattcaaaatggcggtaaagaaaacagaaaacga
AATCAGTCAACAGATCACTGAGAATAATATAcaattcatccaatcagaag
tGATTGATCTTCATGGTGTCACCAAGACCTTGGTAACTAGCTCCAAATAT
TTTTTACGTCAACTAAGGAACAATGGTGGTTGGCTTCATATAACATCAGC
TATTATGGGGATATCTATGGATTCTGAACCACTCGACGGAACAGGAATCG
CTATGGAGATTGATAACCAGAACGTAGACTTCAAGCCTGATCTACAATCA
TTCTGCATTTTACCATGGCTTGAAGAAACCTCCGCCCCAACCGCCAGTAT
AATGTGTGACTTGGAATTAAAAGGGCGTGATTTAGAGTATTGGCGTGTAT
GTTGCAGACAACAATGCAAAGCACAGATTCAAAATTTGACGGCAACGGGC
TATTCATTGTTTAGTGCTTTTGAGTATGAATTTTACCTAGTTGAAAAGGG
TACATTTAAACCAATCTTTGATGTCACTAACATTTACTCAGATGTCTTTG
TTGATGAGATTAGACCTTTCGTTTACGAAACTATGAAAACATTAGATGAC
ATGGGGATCACTACTGAGATGTTTACACCCGAATTTGCACCAGGTCAACT
AGAGTTGACACTATCACCTGACTTTGGTGTTAAGAGCGTGGATAACGCGA
TGAGGTATAAGAAAGTTGTGAAAGCAATGGCAAAGAAACATGGAATGGAG
GCTTTATTTCTGTCTAAGCCTTACCCAGATGAATCTGGTTCATCGAATCA
TTTCAATCATTCCCTTTGGCATACAACAGAGAAAACAAACGCGTTTTCCG
ACCCTGATAAGCCATATAAACTATCTGCCATTTGTATGAATTGGATAGGT
GGGCTTCAAGAGCATTCTAAAGCTTTAGCTTCCTTGTTTTGGGCAAATAT
GAATTGTTTTGAGAGATGCAAACCAGGGACTTTTGCACCAACTAATAATT
CATGGGGTTTCGATAATCGTACAATCTGTTATCGGGTGAAAAATGATTCA
CCCTCTGTAACCTATGTTGAGAATCGAATCCCAGGTGCTGGTAGTAACCC
GTATCTGGTCACCGCTGGATGTCTCATTGCTGGTATGGATGGTATCAAAC
GTAATCTCAAACCTAAATCTGAGCCGTTTGTAGGAAATCTCTATGAAGTT
GATGTATTACCAGAAGGTATTGAAAGCTTGccaaaaagttttgaagaatC
TTTGAAATGTTTACAAGAAGACGAAGTTCTTTCCAAGGAACTCGGTGATG
TCTTCATAAAAGCTTTTTCAGCTCTCCGAAATGACGAAATCAAGAAAtgc
aatgaaaattttgaaaatgatgaacaAAGATTTGAGTATTATAGAAAACT
ttatggaaaatttttgtgaagaaagaaacaaaaacaattcaaaatggcgg
taaagaaaacagaaaacgaAATCAGTCAACAGATCACTGAGAATAATATA
caattcatccaatcagaagtGATTGATCTTCATGGTGTCACCAAGACCTT
GGTAACTAGCTCCAAATATTTTTTACGTCAACTAAGGAACAATGGTGGTT
GGCTTCATATAACATCAGCTATTATGGGGATATCTATGGATTCTGAACCA
CTCGACGGAACAGGAATCGCTATGGAGATTGATAACCAGAACGTAGACTT
CAAGCCTGATCTACAATCATTCTGCATTTTACCATGGCTTGAAGAAACCT
CCGCCCCAACCGCCAGTATAATGTGTGACTTGGAATTAAAAGGGCGTGAT
TTAGAGTATTGGCGTGTATGTTGCAGACAACAATGCAAAGCACAGATTCA
AAATTTGACGGCAACGGGCTATTCATTGTTTAGTGCTTTTGAGTATGAAT
TTTACCTAGTTGAAAAGGGTACATTTAAACCAATCTTTGATGTCACTAAC
ATTTACTCAGATGTCTTTGTTGATGAGATTAGACCTTTCGTTTACGAAAC
TATGAAAACATTAGATGACATGGGGATCACTACTGAGATGTTTACACCCG
AATTTGCACCAGGTCAACTAGAGTTGACACTATCACCTGACTTTGGTGTT
AAGAGCGTGGATAACGCGATGAGGTATAAGAAAGTTGTGAAAGCAATGGC
AAAGAAACATGGAATGGAGGCTTTATTTCTGTCTAAGCCTTACCCAGATG
AATCTGGTTCATCGAATCATTTCAATCATTCCCTTTGGCATACAACAGAG
AAAACAAACGCGTTTTCCGACCCTGATAAGCCATATAAACTATCTGCCAT
TTGTATGAATTGGATAGGTGGGCTTCAAGAGCATTCTAAAGCTTTAGCTT
CCTTGTTTTGGGCAAATATGAATTGTTTTGAGAGATGCAAACCAGGGACT
TTTGCACCAACTAATAATTCATGGGGTTTCGATAATCGTACAATCTGTTA
TCGGGTGAAAAATGATTCACCCTCTGTAACCTATGTTGAGAATCGAATCC
CAGGTGCTGGTAGTAACCCGTATCTGGTCACCGCTGGATGTCTCATTGCT
GGTATGGATGGTATCAAACGTAATCTCAAACCTAAATCTGAGCCGTTTGT
AGGAAATCTCTATGAAGTTGATGTATTACCAGAAGGTATTGAAAGCTTGc
caaaaagttttgaagaatCTTTGAAATGTTTACAAGAAGACGAAGTTCTT
TCCAAGGAACTCGGTGATGTCTTCATAAAAGCTTTTTCAGCTCTCCGAAA
TGACGAAATCAAGAAAtgcaatgaaaattttgaaaatgatgaacaAAGAT
TTGAGTATTATAGAAAACTttatggaaaatttttgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012050XLOC_012050Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021487-proteinTCONS_00021487-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021487-exon-sc0000388-1491911889:28517..28760TCONS_00021487-exon-sc0000388-1491911889:28517..28760Clytia hemisphaericaexon
TCONS_00021487-exon-sc0000388-1510915933:28517..28760TCONS_00021487-exon-sc0000388-1510915933:28517..28760Clytia hemisphaericaexon
TCONS_00021487-exon-sc0000388-1575043694:28517..28760TCONS_00021487-exon-sc0000388-1575043694:28517..28760Clytia hemisphaericaexon
TCONS_00021487-exon-sc0000388-1491911889:29347..31047TCONS_00021487-exon-sc0000388-1491911889:29347..31047Clytia hemisphaericaexon
TCONS_00021487-exon-sc0000388-1510915933:29347..31047TCONS_00021487-exon-sc0000388-1510915933:29347..31047Clytia hemisphaericaexon
TCONS_00021487-exon-sc0000388-1575043694:29347..31047TCONS_00021487-exon-sc0000388-1575043694:29347..31047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:28517..31047 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.5238	24.3131	8.13195	7.60885	9.39787	7.14321	16.7429	17.6858	15.0343	14.7237	14.1622	10.6435	13.7158	13.1873	22.7999	29.1659	22.9561	16.4992	6.95182	6.06973	13.0647	11.5415	19.9876	19.1515	9.54466	10.5354	8.99522	8.68252	13.7298	14.9061
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008146Gln_synth_cat_dom
IPR008147Gln_synt_b-grasp
IPR014746Gln_synth/guanido_kin_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004356glutamate-ammonia ligase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006807nitrogen compound metabolic process
GO:0006542glutamine biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006542 glutamine biosynthetic process
biological_process GO:0006807 nitrogen compound metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004356 glutamate-ammonia ligase activity
Blast
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BLAST of TCONS_00021487 vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.050e-50
Identity = 129/467 (27.62%), Postives = 220/467 (47.11%), Query Frame = 1 
Query:   49 EISQQITENNIQFIQSEVIDLHGVTKTLVTSSKYFLRQLRNN----GGWLHITSAIMGISMDSEPLDGTGIAMEIDNQNVDFKPDLQSFCILPWLEETSAPTASIMCD-LELKGRDLEYWRVCCRQQCKAQIQNLTATGYSLFSAFEYEFYLVEKGTFKPIFDVTNIYSDVFV---------DEIRPFVYETMKTLDDMGITTEMFTPEFAPGQLELTLSPDFGVKSVDNAMRYKKVVKAMAKKHG-MEALFLSKPYPDESGSSNHFNHSLWHTTEKTNAFSDPDKPYKLSAICMNWIGGLQEHSKALASLFWANMNCFERC---KPGTFAPTNNSWGFDNRTICYRVKNDSPSVTYVENRIPGAGSNPYLVTAGCLIAGMDGIKRNLKPKSEPFVGNLYEVDVLPEGIESLPKSFEESLKCLQEDEVLSKELGDVFIKAFSALRNDEIKKCNENFENDEQRF-EYY 1392
             I Q + +N +QF++ E  DLHGV+++    + +F  ++ +      G+L +        M++       I     N ++   P+L +F +LPW + T    A ++CD   + G  L       R   K Q+ +L A+G+SL SAF Y+F          IF V  I +   +         +  +PF+ E +  L   G   E F+    PGQ+E++  P+FG+ S DNA   +  VK +A+K+  + + F+   + D    S   +HSLW    K N F       +L+     W+ GL +HS AL+ L   +++C +R    +         +WG+++ +  + +K      T +EN++  A +NPYLV A  + AG+DG    L   +E   G     D        +P   E++L  L+ED+ L + LG+ FI+ F A++  E++  NE    +  +F EY+
Sbjct:   75 HIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNN-------IRATCFNSDIVLMPELSTFRVLPWADRT----ARVICDTFTVTGEPL---LTSPRYIAKRQLSHLQASGFSLLSAFIYDFC---------IFGVPEILNSKIISFPALTFLNNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIASFFIETGFCD----SGILSHSLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLKHSAALSCLMAPSVSCRKRYSKDRKDLKKSVPTTWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVLAATVAAGLDG----LHSSNEVLAGPDESTDFYQVEPSEIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKKYELE--NEEIAAERNKFLEYF 508
The following BLAST results are available for this feature:
BLAST of TCONS_00021487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LGSN5.050e-5027.62Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1[more]
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