TCONS_00021489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021489
Unique NameTCONS_00021489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length675

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021489 ID=TCONS_00021489|Name=TCONS_00021489|organism=Clytia hemisphaerica|type=transcript|length=675bp
aaatgaaaccactcaaaacgaaactATCCCGTAATTTTGATATACAAGTT
TATACTGcctaggtggaaaatttttggaaaaattaacaagcagtaCGAGG
TTGTTcgttaggcacccgagagtagatCTGCAAATTACTAGATAGGCTTT
TTCCCAGAAATTTTGTCAGCAGTGAACCTTTTTCAACCTTTTGATCGAAT
ATGTGCAGTGTTTTAGTGTAAATATATTTAAgtatttcttcctttaaaac
cCTCTGCTTTTGCTTATCAAGCATTAAATCAATATAGATTATAGTAATAA
ACATGTTTTCTCGATGGGTTTTAGTGAAAAATTTACGATattcaaaatgg
tgaaaatgtcAGCAAACAAGAAGAAAGCACTGCAAACTGTCTTCAAATAC
TCAAAGAAAACTTTCTTGTGGGGTTTCATTCCATTCGTTGTTTATCTAGg
gTTGAGTAAGGGAGCTGATCCAGGAATGCCAGAACCTACAATTTTCAGCT
TGCTTTGGGCTTAGAAAATATCGAGTCGATTAACTATATACCTCAAAGAA
GACGTGGGTACAAAGAGCAGccataatttttgtaaatatttatttCTAAC
AATCGAGAAAAAAACAAGAATACAAGAACATTCTACTTTTAACTTTATTG
TACTCATACATACTGCCTCTTTATC
Run BLAST on NCBI

transcript from alignment at sc0000388:78557..81871+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021489 ID=TCONS_00021489|Name=TCONS_00021489|organism=Clytia hemisphaerica|type=transcript|length=3315bp|location=Sequence derived from alignment at sc0000388:78557..81871+ (Clytia hemisphaerica)
aaatgaaaccactcaaaacgaaactATCCCGTAATTTTGATATACAAGTT
TATACTGcctaggtggaaaatttttggaaaaattaacaagcagtaCGAGG
TTGTTcgttaggcacccgagagtagatCTGCAAATTACTAGATAGGCTTT
TTCCCAGAAATTTTGTCAGCAGTGAACCTTTTTCAACCTTTTGATCGAAT
ATGTGCAGTGTTTTAGTGTAAATATATTTAAgtatttcttcctttaaaac
cCTCTGCTTTTGCTTATCAAGCATTAAATCAATATAGATTATAGTAATAA
ACATGTTTTCTCGATGGGTTTTAGTGAAAAATTTACGATattcaaaatgg
tgaaaatgtcAGCAAACAAGAAGAAAGCACTGCAAACTGTCTTCAAATAC
TCAAAGAAAACTTTCTTGTGGGGTTTCATTCCATTCGTTGTTTATCTAGG
tatgttgtttttttccttttgaatggaattgaaaagtttttatcaGAATT
ATAAATAACTTAAATATAAACAACTGTCATATTGAACCCTACTTTCTCTA
AATTTTTAAAGATGATTTTAAAACTGAAAGTTCTGAAATAAATTATCTTG
ATAAGTAGCACATTCTATTGATAAACACACCAAAACAAGTAATATTTAGC
GTTAGattcaataaatattttcttttaatgtaactttttcaaaattggaa
GTCTTGTTTTTGAGCAATATTGATTGTAAAAGTGAGAActgatttttgca
ttttttttgtttcagggTTGAGTAAGGGAGCTGATCCAGGAATGCCAGAA
CCTACAATTTTCAGGTGAGTTTATCAGTAAGTACAATGAGGAAAGCAAAG
TCTCTCTCAAACCGACCTGAAGGAGTATCACTGGTTTATCAGCGACCAGG
AAAAGGTTCCTTTAAGTCAGGGGTTACCAGGTAAAGCTTCTATAAAATTC
gggaattttctttgaaaaagacCGTTTAATGGTTTTCACCAATCTAAGGC
AACCCTTaatcatatttcaaattattcttgtcagacCGGTGGATGGTCCT
CAACAATACAAGCATCATAAACTACCAAAtcaaaattcttgatttttNAT
TATTCTTGTCAGACCGGTGGGTGGTCCTCAACAATACAAGCATCATAAAC
TACCAAAtcaaaattcttgatttttctctatatttttggacctaccccgg
tggggtggaggtcctataaattaacccgtgttcgttagttagttagttag
ttcgttcgttcgttagttaccaacttttctcNNNNNNNNNNNNNNNNNNN
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ctccgttccaatagatatataaatcgaaatttaaaattaaacattacttc
cattaaattctaattattcgttttataaataggtaggtccattaaagtat
tacttgttaaactttatgtctattgtGAGTATAAATGTTAACAATAAGAC
TTCTGTAGTTTTTGTATTTAAAATTTCATGCCGTCGGTATGAACGATAAG
CCAAAAAAATACTTGatctaaagcaaaaaaaatatatatataaaagtcgG
AGCTCTGTTTTgcgaaaaagcaaaaaataacaataacgattgagaaaata
aaaacattttattttctaatACTCATTATTTTCGCTTCCGAAACGTTTGC
TAGAATGCCGCTTTCTGCATCTTTTGATCCTATTGTGGTCTGGTACTATT
GTATTTAGATGTATTTATCTCCTTTATCTCCATTTCAGCTTGCTTTGGGC
TTAGAAAATATCGAGTCGATTAACTATATACCTCAAAGAAGACGTGGGTA
CAAAGAGCAGccataatttttgtaaatatttatttCTAACAATCGAGAAA
AAAACAAGAATACAAGAACATTCTACTTTTAACTTTATTGTACTCATACA
TACTGCCTCTTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012052XLOC_012052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021489-exon-sc0000388-1491911889:78557..79005TCONS_00021489-exon-sc0000388-1491911889:78557..79005Clytia hemisphaericaexon
TCONS_00021489-exon-sc0000388-1510915933:78557..79005TCONS_00021489-exon-sc0000388-1510915933:78557..79005Clytia hemisphaericaexon
TCONS_00021489-exon-sc0000388-1575043694:78557..79005TCONS_00021489-exon-sc0000388-1575043694:78557..79005Clytia hemisphaericaexon
TCONS_00021489-exon-sc0000388-1491911889:79322..79370TCONS_00021489-exon-sc0000388-1491911889:79322..79370Clytia hemisphaericaexon
TCONS_00021489-exon-sc0000388-1510915933:79322..79370TCONS_00021489-exon-sc0000388-1510915933:79322..79370Clytia hemisphaericaexon
TCONS_00021489-exon-sc0000388-1575043694:79322..79370TCONS_00021489-exon-sc0000388-1575043694:79322..79370Clytia hemisphaericaexon
TCONS_00021489-exon-sc0000388-1491911889:81695..81871TCONS_00021489-exon-sc0000388-1491911889:81695..81871Clytia hemisphaericaexon
TCONS_00021489-exon-sc0000388-1510915933:81695..81871TCONS_00021489-exon-sc0000388-1510915933:81695..81871Clytia hemisphaericaexon
TCONS_00021489-exon-sc0000388-1575043694:81695..81871TCONS_00021489-exon-sc0000388-1575043694:81695..81871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:78557..81871 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
118.082	110.545	129.56	149.778	104.414	84.7001	109.332	119.858	86.5456	73.9836	63.4028	66.5234	41.7725	46.7465	62.2088	55.3468	107.618	93.5512	35.8522	34.6374	96.06	81.9688	84.3241	76.5041	79.8601	80.6839	63.6796	51.249	40.8985	34.179
Blast
[Close]
BLAST of TCONS_00021489 vs. Swiss-Prot (Human)
Match: TOM7 (Mitochondrial import receptor subunit TOM7 homolog OS=Homo sapiens GN=TOMM7 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.932e-17
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 2 
Query:  347 MVKMSANKKKALQTVFKYSKKTFLWGFIPFVVYLGLSKGADPGMPEPTIFSLLWA 511
            MVK+S   K+ LQ +FK S+    WGFIP V+YLG  +GADPGMPEPT+ SLLW 
Sbjct:    1 MVKLSKEAKQRLQQLFKGSQFAIRWGFIPLVIYLGFKRGADPGMPEPTVLSLLWG 55
The following BLAST results are available for this feature:
BLAST of TCONS_00021489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TOM71.932e-1760.00Mitochondrial import receptor subunit TOM7 homolog... [more]
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