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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021497 ID=TCONS_00021497|Name=TCONS_00021497|organism=Clytia hemisphaerica|type=transcript|length=2209bp
GTCGAAATTTTTGTCGAACATTTTTAAATCAGTTGAAATTTAGCAATCCA
ACATAAATTTATCTTATGTGTGGAGCTTTGGTGACATTGACTAGTTTAAA
TATTGTACAGTTTTGTGTGGTTTAAATACTAGATCCAAGATTTCGTTAAG
CAGTACCATTCATGcgcaaaaatgatcaaaacattGTAAATTTGCTTTAT
GATTAGATACAGTCACGTGATTTATTATTTTGCTTTCCAAAATGATTCTT
AACAATATCCAAGAGAAACGGGTTTCGATCAAAAAGGACCTTAAGAGAAG
CATCTACAAATATTGTATCTCAATACTCGTCAACATGGCTGTAGTCTTCG
GAGGAGGCTTTATTTTCTGGTATATTGAACAATGTTATGACCCACAACTT
GTCCGCAATGACCACCAAACATCAACAGTAATGGACCATAATCATGCGGA
ACTGTGCatacaaataaaaaatgaaattttaaactcGACTGTGCAAAATC
TGAGCGACACGATCAATAGCCACAACCAAACGCCAACAAACCTTTCTATA
GTCGAACCTGAAGCTGACAGGCTGAGAGAAAAACTTGGAAATCTGACATC
TCAATTTTGCCAAGCATCGTCACCGAAAGTGGTTGAAGATAGAAAAAAAT
GTAGCTTGAATGTGAAAGATATTTCATCTTGGTGGTCTTACACTATGAGT
ATCTGCTTCACTATAGGTTATGGACACATGGTTTGCCAATCAGCGCCCGG
CAAAATCGTCACAATGCTTTACGCCCTTATTGGTATTCCAATAACAACTA
TGGCTTTATATCACGCTTCGAATATCGTTCTATCCTTTATACAGCTTCTC
ATCATTTTCATTGAGAATCGATTgttaaaacgtcaaaaaatcaCACGGTA
CAAACGCAAAATTTTCATTGCTCAAATTCTAATTTTCATagcttcatttt
catttcaaagtttAACTATTGTGCCTTTTGTGATTGACGCTAATGGAGAA
CCAGTCACTGATTGGCTATCACTGATCTACTTTAACTTTGTGACCTTCTC
AACTATCGGGTTTGGTGATTACAACATGGATTATGAGAAATTCTATGAAG
CTGATACAGTCAAAGAAAATCCAGAATACCCGTTATTGTATGTGGTGAAT
TCAatcaatttttatgttttgatgggCTTAATGGCAAGCCTTTTGAACTT
CCTGGCGAGCTGCGATGAATCACGGGaaagtaaaacaaaagaagCTCAAA
TAATTGAAGAACAATAAGTTTAAACTAAAACTGTATCGAGCTCAGTGAGT
CATATACCAAGGTTGGAGATGATTCCTATGCCTTAAAATTTGCGCTACAT
TTGacaattttaagattttctttacttttgcattgaatatttcaaaatgg
gAATATGTTACTTTCAATCTAGTGTTTGTGTTCGAATCTAAGCGGCCCTC
AAAACTTATGTAGAAAATATGTGGCTTCAAATACTATGATCTTTCATCAA
CGATAACGAGATTGAATTATCNGCCCTCACAACTTATGTAGAAAATATGT
GGCTTGGTCAAATACTATGATCTTTCATCAACGATAACGAAATTGAATTG
TTCAGTCTGAAGAAGAGGGTGACTCAAAAATAGCAACCACAGCATCCATG
GAAAGATGTTATGATCTCTTTTAATCCAATACAAGTGAAATCCTATTTTT
CTTTACAGTTCAGGAAGCAAAGAATTCTTTATTGAAAACACAAACTAATA
CACACGGACTCTAAGGGTACAACGATAAAATTCTCGAGAAACTCATACGT
TGATCTTAATCATGAGACTCCTTTTCGTTTCGGACCTACTTTTTACTGAC
CTTCATTTCCATTAGAGCACTGGTCGCACTATCTGTAATATCCGATCTTT
TCTTTCGTCGCTTGCGTTTCAAATCTCGCTCTTCGTGCTCCACTTTCCAT
TCGGCAAAATTGATATTGGTTACAAGAACATACTCGAAAAGTACGCCCAA
GATGAAACAAAACGAAATCATGAAATAAATATCGATGGCTTTGACATAAC
TGACTTTTGGTATCTTCTTATTAGCTGATAACCAAATCATAGTGAGGGTT
AGTAGAGTGGTCGTACCAAGGCCTAGAAAATGACCAGATATTAATTGTCT
CCACTATAATTTACAAGAACATCGTAAGAGCATTTAACtctaaaaatctc
aaaaaattt Run BLAST on NCBI protein sequence of TCONS_00021497-protein >TCONS_00021497-protein ID=TCONS_00021497-protein|Name=TCONS_00021497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MILNNIQEKRVSIKKDLKRSIYKYCISILVNMAVVFGGGFIFWYIEQCYD
PQLVRNDHQTSTVMDHNHAELCIQIKNEILNSTVQNLSDTINSHNQTPTN
LSIVEPEADRLREKLGNLTSQFCQASSPKVVEDRKKCSLNVKDISSWWSY
TMSICFTIGYGHMVCQSAPGKIVTMLYALIGIPITTMALYHASNIVLSFI
QLLIIFIENRLLKRQKITRYKRKIFIAQILIFIASFSFQSLTIVPFVIDA
NGEPVTDWLSLIYFNFVTFSTIGFGDYNMDYEKFYEADTVKENPEYPLLY
VVNSINFYVLMGLMASLLNFLASCDESRESKTKEAQIIEEQ Run BLAST on NCBI transcript from alignment at sc0000388:36170..40479- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021497 ID=TCONS_00021497|Name=TCONS_00021497|organism=Clytia hemisphaerica|type=transcript|length=4310bp|location=Sequence derived from alignment at sc0000388:36170..40479- (Clytia hemisphaerica)
GTCGAAATTTTTGTCGAACATTTTTAAATCAGTTGAAATTTAGCAATCCA
ACATAAATTTATCTTATGTGTGGAGCTTTGGTGACATTGACTAGTTTAAA
TATTGTACAGTTTTGTGTGGTTTAAATACTAGATCCAAGATTTCGTTAAG
CAGTACCATTCATGCGCAAAAATGATCAAAACATTGTAAATTTGCTTTAT
GATTAGATACAGTCACGTGATTTATTATTTTGCTTTCCAAAATGATTCTT
AACAATATCCAAGAGAAACGGGTTTCGATCAAAAAGGACCTTAAGAGAAG
CATCTACAAATATTGTATCTCAATACTCGTCAACATGGCTGTAGTCTTCG
GAGGAGGCTTTATTTTCTGGTATATTGAACAATGTTATGACCCACAACTT
GTCCGCAATGACCACCAAACATCAACAGTAATGGACCATAATCATGCGGA
ACTGTGCATACAAATAAAAAATGAAATTTTAAACTCGACTGTGCAAAATC
TGAGCGACACGATCAATAGCCACAACCAAACGCCAACAAACCTTTCTATA
GTCGAACCTGAAGCTGACAGGCTGAGAGAAAAACTTGGAAATCTGACATC
TCAATTTTGCCAAGCATCGTCACCGAAAGTGGTTGAAGATAGAAAAAAAT
GTAGCTTGAATGTGAAAGATATTTCATCTTGGTGGTCTTACACTATGAGT
ATCTGCTTCACTATAGGTAATAATCTAAAGTTCTTCTTTGAGAGTTTTTG
AATTTGAATTTGAATATCTTAATCTTCCGATTTGACCAAGATTCATGTTC
CATATTACACCTCTGTCTCAGCAGTCAACTTAGAAACAAGTTCTTAAGAA
TATGTCGGATGAATAAATTGTTACAAAGTGGACATTCGTTGATGATCATT
TTGATGATGGTCATTTAGAATTATGTTGTCAATGGTGATGATACACTCCC
TTCTCACAGACCCACTGGAACCCCTTTCCAAAATATCGTCCCCAGTGGAA
AATTATCCTCCTATTTTTGTCCCCACTGAAAATAATCAAATAACAGAATA
AATCAATCCTCAATGCCAAATATTATGCTATTTCTCCCATCCCCGCTGAA
TTTTCTGACTTGAAAACAAAAGAATTGAAATCCCCAGCCATAAAAAGTAA
GGGAATATCAATCCCCATCGAGTTTCAGCCGTTATTTTTATCCTCACTGG
CTGAAAAAATCCTACCGGGTCTTTGAGAAGGGGGTGTAATGATACTTACT
ACAGTTGAGTATCGATAACTAACACGCACATGGAACACAAATTTGTTCGA
GTTAAAAGGAAATGTCGAGTTATAGAGTAAGGTTTATAAAGTATTGTTAA
GTGAAGAAACTAGAGTGCGAGTTAAGAAGACATTCGTTAAGGAGACATTT
GAGTTATTAAGGTTCGAGTTAAAGAGACTCTATATACTGTTATCATAATT
TAGGAAGGTATTGGAGTTAAGTGTGTGGAATTCAATGAGAGTGAGGCTTA
CCGTGAAAAGCACAGCTCAAAATCATATATTTACGCTGTGCCGACGAATC
GAGATTCTATTCATCGCGCAATCAGCGAAGACAAAAGTAACCANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGATTAGATTGACA
CATGCGCGATAAAGTTTCTATTATTTGTCTTCAGAGGTTAATATATTCTT
TGAAAACTTAACCTCTGATACTCAGGGTAAGTGAGGCTAGGATAAAATTC
TTTCTTTTTATTGACAGGTTATGGACACATGGTTTGCCAATCAGCGCCCG
GCAAAATCGTCACAATGCTTTACGCCCTTATTGGTATTCCAATAACAACT
ATGGCTTTATATCACGCTTCGAATATCGTTCTATCCTTTATACAGCTTCT
CATCATTTTCATTGAGAATCGATTGTTAAAACGTCAAAAAATCACACGGT
ACAAACGCAAAATTTTCATTGCTCAAATTCTAATTTTCATAGCTTCATTT
TCATTTCAAAGTTTAACTATTGTGCCTTTTGTGATTGACGCTAATGGAGA
ACCAGTCACTGATTGGCTATCACTGATCTACTTTAACTTTGTGACCTTCT
CAACTATCGGGTTTGGTGATTACAACATGGATTATGAGAAATTCTATGAA
GCTGATACAGTCAAAGAAAATCCAGAATACCCGTTATTGTATGTGGTGAA
TTCAATCAATTTTTATGTTTTGATGGGCTTAATGGCAAGCCTTTTGAACT
TCCTGGCGAGCTGCGATGAATCACGGGAAAGTAAAACAAAAGAAGCTCAA
ATAATTGAAGAACAATAAGTTTAAACTAAAACTGTATCGAGCTCAGTGAG
TCATATACCAAGGTTGGAGATGATTCCTATGCCTTAAAATTTGCGCTACA
TTTGACAATTTTAAGATTTTCTTTACTTTTGCATTGAATATTTCAAAATG
GGAATATGTTACTTTCAATCTAGTGTTTGTGTTCGAATCTAAGCGGCCCT
CAAAACTTATGTAGAAAATATGTGGCTTCAAATACTATGATCTTTCATCA
ACGATAACGAGATTGAATTATCNGCCCTCACAACTTATGTAGAAAATATG
TGGCTTGGTCAAATACTATGATCTTTCATCAACGATAACGAAATTGAATT
GTTCAGTCTGAAGAAGAGGGTGACTCAAAAATAGCAACCACAGCATCCAT
GGAAAGATGTTATGATCTCTTTTAATCCAATACAAGTGAAATCCTATTTT
TCTTTACAGTTCAGGAAGCAAAGAATTCTTTATTGAAAACACAAACTAAT
ACACACGGACTCTAAGGGTACAACGATAAAATTCTCGAGAAACTCATACG
TTGATCTTAATCATGAGACTCCTTTTCGTTTCGGACCTACTTTTTACTGA
CCTTCATTTCCATTAGAGCACTGGTCGCACTATCTGTAATATCCGATCTT
TTCTTTCGTCGCTTGCGTTTCAAATCTCGCTCTTCGTGCTCCACTTTCCA
TTCGGCAAAATTGATATTGGTTACAAGAACATACTCGAAAAGTACGCCCA
AGATGAAACAAAACGAAATCATGAAATAAATATCGATGGCTTTGACATAA
CTGACTTTTGGTATCTTCTTATTAGCTGATAACCAAATCATAGTGAGGGT
TAGTAGAGTGGTCGTACCAAGGCCTAGAAAATGACCAGATATTAATTGTC
TCCACTATAATTTACAAGAACATCGTAAGAGCATTTAACTCTAAAAATCT
CAAAAAATTT Coding sequence (CDS) from alignment at sc0000388:36170..40479- >TCONS_00021497 ID=TCONS_00021497|Name=TCONS_00021497|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0000388:36170..40479- (Clytia hemisphaerica)
GTTATGGACACATGGTTTGCCAATCAGCGCCCGGCAAAATCGTCACAATG
CTTTACGCCCTTATTGGTATTCCAATAACAACTATGGCTTTATATCACGC
TTCGAATATCGTTCTATCCTTTATACAGCTTCTCATCATTTTCATTGAGA
ATCGATTGTTAAAACGTCAAAAAATCACACGGTACAAACGCAAAATTTTC
ATTGCTCAAATTCTAATTTTCATAGCTTCATTTTCATTTCAAAGTTTAAC
TATTGTGCCTTTTGTGATTGACGCTAATGGAGAACCAGTCACTGATTGGC
TATCACTGATCTACTTTAACTTTGTGACCTTCTCAACTATCGGGTTTGGT
GATTACAACATGGATTATGAGAAATTCTATGAAGCTGATACAGTCAAAGA
AAATCCAGAATACCCGTTATTGTATGTGGTGAATTCAATCAATTTTTATG
TTTTGATGGGCTTAATGGCAAGCCTTTTGAACTTCCTGGCGAGCTGCGAT
GAATCACGGGAAAGTAAAACAAAAGAAGCTCAAATAATTGAAGAACAATA
AATGATTCTTAACAATATCCAAGAGAAACGGGTTTCGATCAAAAAGGACC
TTAAGAGAAGCATCTACAAATATTGTATCTCAATACTCGTCAACATGGCT
GTAGTCTTCGGAGGAGGCTTTATTTTCTGGTATATTGAACAATGTTATGA
CCCACAACTTGTCCGCAATGACCACCAAACATCAACAGTAATGGACCATA
ATCATGCGGAACTGTGCATACAAATAAAAAATGAAATTTTAAACTCGACT
GTGCAAAATCTGAGCGACACGATCAATAGCCACAACCAAACGCCAACAAA
CCTTTCTATAGTCGAACCTGAAGCTGACAGGCTGAGAGAAAAACTTGGAA
ATCTGACATCTCAATTTTGCCAAGCATCGTCACCGAAAGTGGTTGAAGAT
AGAAAAAAATGTAGCTTGAATGTGAAAGATATTTCATCTTGGTGGTCTTA
CACTATGAGTATCTGCTTCACTATAGGTTATGGACACATGGTTTGCCAAT
CAGCGCCCGGCAAAATCGTCACAATGCTTTACGCCCTTATTGGTATTCCA
ATAACAACTATGGCTTTATATCACGCTTCGAATATCGTTCTATCCTTTAT
ACAGCTTCTCATCATTTTCATTGAGAATCGATTGTTAAAACGTCAAAAAA
TCACACGGTACAAACGCAAAATTTTCATTGCTCAAATTCTAATTTTCATA
GCTTCATTTTCATTTCAAAGTTTAACTATTGTGCCTTTTGTGATTGACGC
TAATGGAGAACCAGTCACTGATTGGCTATCACTGATCTACTTTAACTTTG
TGACCTTCTCAACTATCGGGTTTGGTGATTACAACATGGATTATGAGAAA
TTCTATGAAGCTGATACAGTCAAAGAAAATCCAGAATACCCGTTATTGTA
TGTGGTGAATTCAATCAATTTTTATGTTTTGATGGGCTTAATGGCAAGCC
TTTTGAACTTCCTGGCGAGCTGCGATGAATCACGGGAAAGTAAAACAAAA
GAAGCTCAAATAATTGAAGAACAATAAATGATTCTTAACAATATCCAAGA
GAAACGGGTTTCGATCAAAAAGGACCTTAAGAGAAGCATCTACAAATATT
GTATCTCAATACTCGTCAACATGGCTGTAGTCTTCGGAGGAGGCTTTATT
TTCTGGTATATTGAACAATGTTATGACCCACAACTTGTCCGCAATGACCA
CCAAACATCAACAGTAATGGACCATAATCATGCGGAACTGTGCATACAAA
TAAAAAATGAAATTTTAAACTCGACTGTGCAAAATCTGAGCGACACGATC
AATAGCCACAACCAAACGCCAACAAACCTTTCTATAGTCGAACCTGAAGC
TGACAGGCTGAGAGAAAAACTTGGAAATCTGACATCTCAATTTTGCCAAG
CATCGTCACCGAAAGTGGTTGAAGATAGAAAAAAATGTAGCTTGAATGTG
AAAGATATTTCATCTTGGTGGTCTTACACTATGAGTATCTGCTTCACTAT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021497-exon-sc0000388-1575043694:39764..40479 | TCONS_00021497-exon-sc0000388-1575043694:39764..40479 | Clytia hemisphaerica | exon |
| TCONS_00021497-exon-sc0000388-1575043694:36170..37662 | TCONS_00021497-exon-sc0000388-1575043694:36170..37662 | Clytia hemisphaerica | exon |
| TCONS_00021497-exon-sc0000388-1510915933:39764..40479 | TCONS_00021497-exon-sc0000388-1510915933:39764..40479 | Clytia hemisphaerica | exon |
| TCONS_00021497-exon-sc0000388-1510915933:36170..37662 | TCONS_00021497-exon-sc0000388-1510915933:36170..37662 | Clytia hemisphaerica | exon |
| TCONS_00021497-exon-sc0000388-1491911889:39764..40479 | TCONS_00021497-exon-sc0000388-1491911889:39764..40479 | Clytia hemisphaerica | exon |
| TCONS_00021497-exon-sc0000388-1491911889:36170..37662 | TCONS_00021497-exon-sc0000388-1491911889:36170..37662 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000388 | supercontig | sc0000388:36170..40479 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005267 | potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071805 | potassium ion transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071805 |
potassium ion transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005267 |
potassium channel activity |
Blast
The following BLAST results are available for this feature:
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