TCONS_00021502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021502
Unique NameTCONS_00021502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021502 ID=TCONS_00021502|Name=TCONS_00021502|organism=Clytia hemisphaerica|type=transcript|length=814bp
AAAATTACCTCCGTTACTACCTAATCCCGTGTGCATAAAGTCTAACGTGA
GCTTGTCATTTACACTGGACTGATTCGGACAAAGAGTAGCTGAACTTTAC
CAAAAGCCAAGAGAGTCAATATGTATCCAGTCACTAGAATTGCAGCTCCA
GCTCTCAGAAATGCTactCGAGCACTTGTCCGAACCCAACCAATCGTAAG
ATCAACAGTTCTTCCTACTACATCGGCAATTGTTCCATCCTCTGGATTAC
ATACATCAACAGCCAACCGTGATATCGAGCAAGCTGCTAAATTCATCGGT
GCTGGAGCTGCCACAGTAGGATGTGCCGgaTCCGGAGCTGGTATCGGAAC
AGTTTTCGGTAGCTTGATCATCGGTTATGCTCGTAATCCATCATTGAAAC
CACAACTTTTCTCATATGCCATCTTGGGATTTGCTTTGTCAGAAGCCATG
GGACTTTTCTCCCTTATGATGTCTTTCTTGATCCTCTTCGGCTTGTAGAT
ATTTAGCAATGTAAACTTTTAttaacaattttttaattttagtaattATG
TTTCGATGGAACGGCTCAGGGTTTAATACCAAAGGAACTGGTTGTTCAGG
ATAAAGATCTTGTTAAAATGTAGAAtgttttttgtgactttttaaatttc
aaaatattttaatagaATCCATGTGATTCGACTCggaaaaaatttgtttc
atcttctttttataGAAAACCTGTTTTGTGGTGATTGGATTTATGTTACC
GTTTAGTTTCGAAATATTCTTGAATAGCGCTCCGCATCTCACacgtcata
attatttcaactag
Run BLAST on NCBI

transcript from alignment at sc0000388:55649..71834-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021502 ID=TCONS_00021502|Name=TCONS_00021502|organism=Clytia hemisphaerica|type=transcript|length=16186bp|location=Sequence derived from alignment at sc0000388:55649..71834- (Clytia hemisphaerica)
AAAATTACCTCCGTTACTACCTAATCCCGTGTGCATAAAGTCTAACGTGA
GCTTGTCATTTACACTGGACTGATTCGGACAAAGAGTAGCTGAACTTTAC
CAAAAGCCAAGAGAGTCAATATGTATCCAGTCACTAGAATTGCAGCTCCA
GCTCTCAGAAATGCTGTAAGTTATGTTTTTTTATAATTCACGTTGGATTT
TTTTCACATAAGCTGTGTTTACAGATGTAAAAAATGTTGATTTGAGCAGC
TGAGTGTCAACAGGTCAAGTTTGTGTAAAACCAAGCTACTAAGCCTACGG
TTATCTTTTTAGAATCCCCAACAAAATATTGGTCTGTATATAAGCTTTGC
ATCAAGTAAGGGTGAAACATTAGCCAGGTTATGTCAATCGAAAATTGTTT
GATAACCGAACTGATAAACTAGCTGTATTGTATAAGGGTTGTGAAGCGAT
CCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGACAC
TGAAGTGTTCCTATGCACCAATACACAAAAAGTCCATTGATTTAGTCCCC
TCCCCATCTCATTCATCAGCTTGATGAGCTCACATGCCATACTCCATGTG
CTTTTTCCTGGTCTGTCGTCCTCCAAAACATTTCACTGCTTTCTCTACCA
TGTTTAATTCGGAGAATTTTTAAAAGGCCTAAGAGCGAAGTTTGTATTTT
TGCCTTGAGGTTCTAACGAGTTCTTGATAAAGCNAAAACAAAAATGTACA
AAGATGGCTTGTTGGTTCTTCGGCAGTTTTGATTTATTTCTTGACAAATT
CGACAAATTTGATTACCTCCTTACTTCTTTATCATAGAACATCCACTTGG
TTTTGCAAGGTAAGTTTCGTTCACTAAAACTAAAAGAGCACTTCTCCATC
CCGCCCGCGCGACTTGCAAAAACCTCTCATTGATTGACCTTATTTGATAT
GATACTTGATACTTGCTGTTAAAAGTCAAGGGACGATGAAGATCCTTTCC
GTCAGCACCGTTCAAACTATTATTTTTTCCATTAAACAGCAAAATAAACA
TTAAAAACTGAAGAACCACTGCTTAGATTGCTTAGATGCGTGCCGCCCGC
GCGGCAATTTGATCAACTTCAGAATCTAAGTCCAGACGGTGTCAATCAAA
CAACTTCAAACGGAAATCGTAATATTCGATTGTGTTCGATTGCGTTCAAG
TAACGTTCGATTGGTAGTCAACCTATGTTTAATCGGTTCGATTGATTGTA
AATTACCTTCGATTGATCTTCGATTATGATTATTTTCGATAAGTTTGATT
ACGATTAAATTAAATTTGATCACTCCTTTAAAGCTCTTTTTAGCGTGGAC
GGCCAAGTCGTAAGTAACCGTACTAGAATGAATAAAATAGAATACAATTG
AATCAATCGAACGCAATCGAACATAATCGAATACAATCGAACGTAATCGA
AGCAATCGAACGGCAAATTCTGAGTAATATTCGATTGCGATTCGATTGCG
TTCGACAAGCGAATCGCAATTATTCGATTGTGTTCGATTGCGTTCAATTG
ATTCGGCGTTCGATTCATTCGATTGACACTGTCTGGCTAAGTCCGTGTTT
CGGCTTCCGGTAATTTTGTTGCTGTTCACTACTGCTAGGGTGCACCATTT
TAAAACGGCATTTTTCGCAGTCCCATCCTAGCTACCAAACCGAGAAAGTT
TTCGTGGCTTCAAGCCAAACCATTCAAGGTCATTTTAAAGATGCAATTTA
TATAGCAAATTTTATAGCAAATTTTCGCTTGGGATAGAAGTTTAAAGGTA
CGTGCACAATATAGCAAAACTGCTTCGCTCATAAATTCGCTTCGCNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCTAAAAACAAGCTTAGGT
CGGCAAAATTTTGCCGGCCTTCGGCCGGATTTGGACGGCACTTACGTGCC
GACTTACTTTTACTTGAATTTCGAGGGCTGCAATTATTTTGATGCTCTCC
ACCGTTTGGGCTCTGGAGGTTGTAAACAAACCTGTTTTGCCTGCGTTTCC
TTAGGAAAAGTTTTTTTGCTCTTTTTTAGTTATGTTGAACAAAATCCCCT
CCAATTTCAGTATGTTCAAGGCGGTCATCGAAATATTGTTCTTTTCGCGT
CACCTGCTATCATCATGTTTTCCGCTGATTCTCTGATGCGGAGATGTGGA
AAAAAATCCGGGGAAAGCAATTTGTTCTTTTAATAGCTTTTTTCTCACTT
TCTCTGACGGCCATCAAAAAATTGATTTGCTCGCCTCACCACCCGCCCCT
GAATTACTGGCGTGATTAAAAAAACCAGGAATTTTTTCGACCGCCCGTCC
ACCCGCATGCATTTTTAACACCCGTTGCAACGCGAACAGAGCATTTTTTC
GATTACCGTCCAATCTATTCATGATATTGTACCACCCTGAAAATCTTTTG
CCAAAAGAACATCGCTATCAACAGTTAGAAGCTGAAAACCCTAACCCCAG
ACGGTGTCAATTGAACGAATCGAACATTGAATCAATTGAACGCAATCGAA
CACAATCGAATAACTTTCAGATAAAAAATATATTGACAATGAATGGGTAA
GCTTTCTAGAAATCAAAACACAAATAGCATAACTTTCGCTAAAAAAAAGC
AAACTAAAGATTTTCTNTTTTTACGGGTCGGTGCCCTTACAAACTTCACT
TTATATAAATATATAAATATATTCTATTTCTAGCCTATTATTTACAATTC
GATATGATACAAAAGTTGTTTAAATAACTAAGCTTGTCATTTGTCTTCGT
GTTATAGTCGTGGGGACGGAAGTATATTCAGTCTAGGTGACATAAGGTCT
ACCTAAATGACCCACGAAGGAGTGCTAGTTGACCACTTCCTTAACACTGA
GGAGGGGTGTGCCCGGGCCGAACAGATCTTAGTTCGACCGCATATACTCC
TCGTCTTTCATCTCGTCTCAAGTCGTGCGCATGAATGTCGACCAAAGTCG
ACATCCCCACTCCATTGCCCTGATAACCATCAGTTCCCTGTACTTTTTGG
CGATGCCAAGCCGTTTGAATAAGTCGTCGTTCTTGGCGCACCAGACTCCA
CGTATAGAGATAATCAAGGCAGCATGCTTGATATCTTCCCGACCAGTAAG
ATTGCGGACATAGTCATTGATAGGCTCAGAGTTGTAAATTTGAGCTTTGT
GGTCCCAGTTGCCATTCAAGGTGATCGTATTACCATGTATTCGCATCCTG
CCGGTGACGATGGAAACGTCTATTATAGTAGCGGAGTCCGGTGACACAAC
AATCAGATCAGGTTTATGAAGTTGTTGATTGTTTATACGGATGTGGTGCT
CGTATAAGACTCGAAGATTGGCGGCCTCGAGGACAAGGTTGAACAAGATG
GGGGAGAGGGGATCTCCCTGCTTGACGCCCCGTAGGAGACGGATTCGGTC
AAGTTTCACTGGCCCGCATGAGATGTTCGTTGTGGCGCCAGTATATGTGT
TGATGATGTAGTCGATCATCTGTTCTTCTACCTTGTGCCGCCGAAGTGCT
CTGGTCAGACTATGATGAGATACCGAGTCGAATGCTTTACTCAGATCTAT
CCCGACAATGGATAAGGTAGAACAACTCTTCCTGGCTTTCTGAGTCAAGG
ATAACAGTGTTTTGAGCAATACCATCCATGGGAAGGAAAGCCTTCTGTCT
GGGATTGAGATGAAGCGCCTGAGTTAGACATTTAGCGAGGATACAATGGA
GAAATCTCGCAATGACGATACTAATCGTAATCGGTCTCCAGTTGGAAGCG
TCATCGAGTCCGTCCGGCTTTTTGGGAATCAGAGTAGTTCTATTCTTCTT
CCACTGAACGGGTTGAGTTCCCGTGATGAGACAGTAGTTGAATATCATGC
AGATCGAGCTCAGATTGGCAGCTTTTAGGTCTTTAGGTCTTTGACTTTGA
AGAAGTCAGGGCCTGCGGCTTTGTTGGGCATGTTTTTCAACTCTCGTTTG
ATCTCCTCAATGGTGATTGGGAGAAAAGTCGGATTGCACGGATGAGGGGC
TTCTCGATATTCGTGATTATCAGCAGGGCTCTCAGATTCGTAGATCCTCT
GATACGTGTTACGAACACTTTCCGCAGTAAGAAAGGTATCAGTTTCTTCG
CAGGTGTCATTCAAGATGTTCGTAGTGAGTTGCTTTCTACTACGTTTGAA
CATTTCTTGAAAACGGATGTAGCGCTTGAGACGTATACGTCGTCTATATG
GCCTCCTATCCGGGGCAGGATTAACAGGTGGTCTCCTGCGTCGAGGGGCT
TGTCTCGTAAAGTGTTCGTTGATGTATCTCTCGAGTTCGGGCGTAACATC
GGCTCCGTGGTCAATAAAGCGGGTTAATATCTGGCTCAGTTCGATATCAT
CCTCTGCAATCTCTCTGATCTGTCGGAAGAATGGGTCTCGACTATCTGGA
GGTGTATCAGCGAACCCTGATCTTCGTCGTCACTGCCACTGGCGACGGGA
TTATCGTCCCTCTCACGGACGATGATGTCATTTAGGATGTTTCGATACTT
GGCCGATTTCCGCTGACCCTTGATGGATTCTAGGGACTGTGGGAACTTAC
CGATGAGATACTGGTTAATAAAGCGAGTTTCAGGTGGTGCGGTCGCTACG
GAGACAGCTAAAAGCCTTAGTTCCTCATCGGACCATTGGGCCTTGACGCG
TTGAACGTCTTGTGCCGCCTCATGTTGGATAGGGTGAGCGTGGCGCATAT
GCTGACCCAGACCTTGTCTGGTTCTGAACGACCTGTCGCAGAGCGTACAA
GCGAACTCGTGAACAACAACCTGAGCGTAAGAGAGTCATAGTTACTCCCG
CCGTTTACCCGCGCTTGGATGAATTTCTTCGCTTTGACATCTTCTCTGGG
CAAATGACATTGAAACTAGTTTCTTTCAAGCTGTTGACTCTTTAGATTTA
TTGAGGAGAAATGGTGTCACACTCAATCCTGAAAAAGTCCAATTCGCCCA
AGATTGTGTCACGTTTGCTGGCTTTGAAATAACTCTGGACAACGTCAAAC
CGTGTAGAAGATTCTTCGAAGCAATTGAGGACTTCCCGACCCCTCGCAAC
ATCCACGATATCCGATCATGGTTTGGCTTGATCAATCAAGTGTCTTTTGC
CTTCCCATCCGCTGAAATACTCCAACCATTCAGACACCTCCTTCGTCGAA
ACACACCTTTCATATGGAACAAGCAATTGGACGAGACGTTCCAACTATCC
AAACAGCTCATCGTCAACCACATTGCAGAGGGTATCACCATTTTTGACAA
GGACAAGCCAACATGTTTAGCTACTGATTGGTCGAAGAAAGGCGTCGGCT
ACTGGCTCCTGCAGAAGCAATGCCAATGTGAAGGCTCAAAAAACCTGGTT
GCTGTCATGATGGATGGAAGATCACACTGACTGGCAGTAGATTCACAAAC
TAATCTGAATCCAATTACTACCCCATAGTCGGCGAAGCATTAGCGGTTGC
TGATGCACTGGAAAAGACAAGATATTTCACCCTTGGCTGCTCAAATCTGA
TTGTGAACACCGACCATAAACCCCTTCTCAATATCTTCAGCGACAGATCT
CTGAATGACATCCCAAACACTCATCTGAGGGACCGCAAAGAAAAGACCCT
TCCATTCAAATTCACTATCACTCACATCCCTGGCCTGAGCTGAAGAACAA
CATCCCAAACGCATTCTCCAGATACCCAGTTGGTGAAGCACCTAAAGACA
CTGGGGATGACGATTTTGACAAAATCTTGTCCATTGGATCTGCCTTTCAA
GCAATTACATGGGACATGGTGAAGGTTGCTACACAAAGCAGTGTATCCAT
GATGTATCTCATCAAAGCACTGGAAGATGGATTCCCAAACAAGAAAGAGG
ACCTTCAACCAGACATCCAACAATACCATCAATACAGAAGTGATCTCCGT
TACGTTGATGTTGTCGTGTTATACAACCACAGGATTATCATCCCACCGTC
ACTTAGGGCCCAGACCCTGGATTCCCTTCATGCAGCCCACCAAAGCACTG
GCATGATGCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GGAAAAGGTTTTATTTCATTTACATTAAGTTTTAAAATTTTTTCTCTCTC
TTAAAATCTTTAAAAATTACTGATAAGCAATAGACTATATTGGCTTAACG
TGAAAACTCAAATTTGACCCCCGAGAATTACCCGCAATGCTTTGCGCAGA
AAAAAGTTCACAATGAAACTTTTCTGCACAAAGCATTGTGGGCAATTCTC
CTTGCCTTAACCGCTTTACTTGCAAACTGTTTCAGAGATTTGTTTTACTT
TTAAAAATTAAGTTTTAAAGGAAAAGCTCAGTTTTAAAGGAAAATCTCAG
TTTTATTGGAAAACCAAACTGAAATAAGTATATCACTCAAATCTTTCAAC
CAGCTTGCCGTTAAAATGTCTTAAGACGTCCAAACAGAATCTGACAGAAT
ATACATAATTTTGACCAAACATATCCTACTAGTGTCCTATTTCAAAATAC
CCATCTGCCCAAGGGTAAATACTTCCTTTTTGTACACAGGCTCCTCCTGA
CTTCAATGGTATCTTGTCTTTCGTCTGTATTCTCTATTACTATTGCTGAC
ATTTTTTCCTATTTTCCCATACACAATCTTTAGACAGGTCCATTCAGCCT
CTAGCTTGTCTTTCGTGGTCTTTAACCAAAACGCTAGTTTTCTTATCTTT
TCTATCCGAAGTACTTAATTGTTTTAGCTTTTAAGTTATTAAAGAAAATT
CATGAACAAGCAGCTCCTAATAATTTTTTCCTGTGCACATTGCTCTAAAC
TTTTAATGTAACGTAACAAATTTTACACCATTTTGTTGCCTGAGAAGTTA
TCATCAAAATGGTATTAAATTGTTGCGATAAAATTTGGTCAAGCTTCTGG
AAAAGCCCCCCCCCCCAAGATGCTTCCCCTAGTAAAAGAATAGGAAGATG
CTCTGAGGGTTTAGGTATTTGACAACAGTAAACAAAACTCAATGAGTGTG
TTTTGCATATATAACATTTGAGAAAAGTTGTTAAGAATAAAGAACTTTAT
GACCTGACCATTTCTTTATTTTTAGACTCGAGCACTTGTCCGAACCCAAC
CAATCGTAAGATCAACAGTTCTTCCTACTACATCGGTATGAAACTTTATC
TTTTTTGGTTGACTATTTTCTTTATTTTAAAAATTTTTGATTTTATTTTA
ATTTAGCATCTACCATGGGAAGATTTAAACTGGTGTCAAAAATTCTAAAG
CCCAATGCCATTATTGCAACAAATTTTATGATCTTTTACAAATTTCATTC
AAATAAAGCCTCAACAATAAAAAAGTGAAAATACGAAGTATTGAATACAA
AACCGCTAAAACGTTTTCATAGTGGGCACCCTCCCCCTTGCCCACTTGAA
AAAGGAGCGGTTTGAGAATTTTACTGGATTTAAAAGCAGTTGGGCTTGTG
AAAATTTCAAATAAAAGGTGTGGCTTGGACCAAAGGGGAGTTAATTTTTT
AATGGGGGCTTGGAAGATTTGTCAATTTGGAAAGAGTGTTTTCCATTAAT
TTTAAATTTCTCAACAATTACTATACTTCCATTCGTTTGAATGAAGCAAA
AACTCTTGTTTCTACAACTCTTGATGGAGTAAGTTGATTTTTCAACCTTT
GCAAGACAGCTGCTTTTGTTTTTCCACCGGTTATTTCACAAAAGGTTGAA
AAAAGAGGTGAGTTGAACTTAAAGCTGGGAAAAAGAAGAGGGTTGAATGA
AAAGATGGGGGTCGAGGAATTTTCATTTTTAAGAGGGGGTCGAGCTTTAA
AGAGTGGGTGTCACCACTATGGTTTTAAACCGAATATGGTCGTAATAACA
TCAAGGAAGTAAATTTGTTTTATTTTTTTAACGGCGCTATTAGAAGTGTG
TGTTTTTAGGTTAATTAAAGAAAGATAGTGAAACATTTATGAGACTTCAT
TTCTCTTTCAGGCCATAGTCCCATCCTCTGGATTACANAAGTGTGTGTTT
TTAGGTTAATTAAAGAAAGATAGTGAAACATTAAGTATTCATTTTTCTTT
CAGGCAATTGTTCCATCCTCTGGATTACATACATCAACAGCCAACCGTGA
TATCGAGCAAGCTGCTAAATTCATCGGTGCTGGAGCTGCCACAGTAGGAT
GTGCCGGTAAGCATACAATGACATTGGTTTGTTATATCATATCTTTCTAA
AAGAGGATATCTTAAAGAGACTAAACTCAATTTGAAATTAAGAAATGTCA
TTTTGAAATAGAAGATGTATCCAATCGCTGGTTTATAATAGCCTGAAGAA
TGAAATAGGCATACTCTTAAATACTTTCTGTAATTCGGGTCTTCCTGTAG
TTCGAATATTTTACGCTGAGCTGGAATTAGCGAGAGTCAATTGTACATAA
ACCAGCGAATCAAGCCTTTTCTTGATATTCATGATGTAATCTTTGCGCCG
AAACAATAGATAAAGCGTAACAACTTTTCTGCCATTATTCTTGATATGGG
TAAGTCAAGATGACGTCATATTTTTTAACGGAAGCACCCAAAAAAGCCGG
TTTTTGACCTCTGTGTTTCTATTTTTAGTAACAGAGAGGTCAAATCCCGG
CTTTTTTAGGGTGTTTCCGCTAGAAAAATGACTTACGCATATCAAGAATT
GGTGGCAAAATTTATGTATTGAAACCGGGTGCTTACGAAAATAACTTAAA
ACGTATAATAATAGAATCAAATATCTTTTGGAAATCTATTGTAGATAATT
AAAGAATTTCAATGAAACAGTTCTTTTTGGACCTACCTCCGGGTGCCCCG
GTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTCTGTTCGTTCGTTCG
TTCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTC
TGATTTTTTGCACAATGATGCAAAATGGCAATGCCCANNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTTT
GGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTACAAA
GATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGGGTTTTTCCCGGA
AAATTCTTATTCGCCTTAAAAAACGGATATTTGTATTTTGGGGGAAATTC
CCTTTAACCAAATAAGAAAATATAGCTTTTAACAATGTTGACTTCTTATT
TTTTTCTGATTTTTTGCACAATGATGCAGAAGGGCAATGCCTAAAATGTG
TCGGAGCCCGATTTTCGAAAAAAAATATATTTGGGCAAATTTGGGCCAAA
AACTGCCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTT
TTTTTTCTGATTTTTTGTGCAAAGATGGGGGGCAAGATTCTCTGAAGAAT
GGCTGAAGTGGTTTTTCCCGGAAAATTCTTTTTCGCCTTAAAAAACGGAT
TTTCGTATTTTGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTT
TCTCAAAGTTGACTCATTATTTTTTTCTGATTTTTTTCACAATGATGCAA
AATGGCAATGCCTGAAATGTGACGGAGCCAGATTTTCGAAAAAAAATATA
TTTGGGCAAATTTGGGCCAAAAACTGCCTAAAATAGGGTTTTTTGAGCCT
GAATGGTTTAAGTGATTTTTTTTATTTGGGGAAATTCCTTTTTACCANTC
GAAAAAAAATATATTTGGGCAAATTTGGGCCAAAAACTCCCTAAAAATAG
GGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTATT
CAACACACAAGCTTTATTTTTCCATTCTGAATTTTTGCACAATTATTGTC
ACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAG
CATGTTGCTTGTTTTGTTTTGGAGTATTTGGATTTCTGTATTAATCTTTT
CTTATTTTTTTCTGGTGGTCCTTGCTTGGAAAACATTTTGTAACGCAAAT
GTTTTGCCACCAATAATGGCGTCCAAGTGTTTTGATTCGGAGTGTCAATC
AAGGAAAAGATTACATCAGGAATATCAAGAATTCAATCTTGTTTGTCTCA
TTAATTCTTTCCTATGAGTAAGATTTAGTGTAGAAGTTCGGTCTTGGGAT
TTTTGCTGAATTATGTATTCAGTTTACTGTTTACCTAACCCTGTTTACCT
AAGGCTTGCATTTTCTCGTTTCTTCTTTTAGGATCTNTACGTATTCAGTT
TACTGTTTACCTAACCCTGTTTACCTAAGGCTTGCATTTTCTTCTTTTAG
GATCCGGAGCTGGTATCGGAACAGTTTTCGGTAGCTTGATCATCGGTTAT
GCTCGTAATCCATCATTGAAACCACAACTTTTCTCATATGCCATCTTGGG
ATTTGCTTTGTCAGAAGCCATGGGACTTTTCTCCCTTATGATGTCTTTCT
TGATCCTCTTCGGCTTGTAGATATTTAGCAATGTAAACTTTTATTAACAA
TTTTTTAATTTTAGTAATTATGTTTCGATGGAACGGCTCAGGGTTTAATA
CCAAAGGAACTGGTTGTTCAGGATAAAGATCTTGTTAAAATGTAGAATGT
TTTTTGTGACTTTTTAAATTTCAAAATATTTTAATAGAATCCATGTGATT
CGACTCGGAAAAAATTTGTTTCATCTTCTTTTTATAGAAAACCTGTTTTG
TGGTGATTGGATTTATGTTACCGTTTAGTTTCGAAATATTCTTGAATAGC
GCTCCGCATCTCACACGTCATAATTATTTCAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012058XLOC_012058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021502-exon-sc0000388-1575043694:71670..71834TCONS_00021502-exon-sc0000388-1575043694:71670..71834Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1575043694:59450..59509TCONS_00021502-exon-sc0000388-1575043694:59450..59509Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1575043694:58429..58531TCONS_00021502-exon-sc0000388-1575043694:58429..58531Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1575043694:55649..56134TCONS_00021502-exon-sc0000388-1575043694:55649..56134Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1510915933:71670..71834TCONS_00021502-exon-sc0000388-1510915933:71670..71834Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1510915933:59450..59509TCONS_00021502-exon-sc0000388-1510915933:59450..59509Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1510915933:58429..58531TCONS_00021502-exon-sc0000388-1510915933:58429..58531Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1510915933:55649..56134TCONS_00021502-exon-sc0000388-1510915933:55649..56134Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1491911889:71670..71834TCONS_00021502-exon-sc0000388-1491911889:71670..71834Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1491911889:59450..59509TCONS_00021502-exon-sc0000388-1491911889:59450..59509Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1491911889:58429..58531TCONS_00021502-exon-sc0000388-1491911889:58429..58531Clytia hemisphaericaexon
TCONS_00021502-exon-sc0000388-1491911889:55649..56134TCONS_00021502-exon-sc0000388-1491911889:55649..56134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:55649..71834 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
555.373	613.889	777.953	780.389	210.986	139.316	364.236	350.252	744.93	644.669	801.429	854.314	606.654	574.303	293.218	310.658	266.387	383.309	183.636	159.167	804.848	784.193	567.879	544.158	418.079	487.268	878.425	965.83	548.96	523.21
Blast
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BLAST of TCONS_00021502 vs. Swiss-Prot (Human)
Match: AT5G2 (ATP synthase F(0) complex subunit C2, mitochondrial OS=Homo sapiens GN=ATP5G2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.601e-32
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:  214 PTTSAIVPSSGLHTSTANRDIEQAAKFIGAGAATVGCAGSGAGIGTVFGSLIIGYARNPSLKPQLFSYAILGFALSEA 447
            P TS +V S    TS  +RDI+ AAKFIGAGAATVG AGSGAGIGTVFGSLIIGYARNPSLK QLFSYAILGFALSEA
Sbjct:   49 PLTS-LVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 125
The following BLAST results are available for this feature:
BLAST of TCONS_00021502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AT5G21.601e-3280.77ATP synthase F(0) complex subunit C2, mitochondria... [more]
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