TCONS_00021519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021519
Unique NameTCONS_00021519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021519 ID=TCONS_00021519|Name=TCONS_00021519|organism=Clytia hemisphaerica|type=transcript|length=819bp
CTGGAGAAAGGGTTCATCATTGAGTTTGATAACATAGGACATGTTGCAGA
TCTGGCATACATCTggaaaaaagcttttgacttTGAGGCAAAGCCTTTGG
ACAAGTTCATTCTTGTTAGCAGATTCAACTTCCTGCTTTGATAGGAAGTT
AAGTGTGTCGTGAATTGtgtcttttttgaaacttttggtcAGTGTAGCGA
TAATGGATTTTGTAGGTTTCTCTGGATTGTACAATTGAAGACAAGATTTA
ATCTGGGGATCCGGTGCTTGAAGTGATAGCTCTGTTACTATTCGTTTCCA
AATCTGTACGTCTTCATTTGGTTCCCCTTCTGGTTCAATTTCATCCGTTG
GTTTAGTAGCCATGGATCCAAGAAATCAAATACGTGACACAAACCAGGGT
TCCTTATTTGTGGGGTGCTGGGAAATCTCTTGGAAGAAATCAGGACGAAA
TGCAGAAAAACTATACCTGGTCAGCTGCACATGTGAACCCAACTTCTGTC
ATGCACAACTGTTCCTCAGGATTTAACAAGATGCCTGAGTGACCAGCCAC
AGGACCCTTATGCTGTGATATTGATTGAGATGTTGgatgtttaagataaa
aatgaaTAGTTGTATACCTCGAGAGTCCAGGGCTAACGGTGTGTTAAAGT
TTAGGGTGGTCTTTCTCTCTTCTGTTGATCTTCAGAACAAAGTTTGTCCA
GGTGATACTTGATAGCCAGCAATCCACCATCAAGCACCATCAAGCAAGGG
GTGTCGTGGGCAGATGGGTATCAAGCCCCCCCTTAAAAATGGCACCCCCC
TCTTTTAGCTCAACCCccc
Run BLAST on NCBI

protein sequence of TCONS_00021519-protein

>TCONS_00021519-protein ID=TCONS_00021519-protein|Name=TCONS_00021519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MATKPTDEIEPEGEPNEDVQIWKRIVTELSLQAPDPQIKSCLQLYNPEKP
TKSIIATLTKSFKKDTIHDTLNFLSKQEVESANKNELVQRLCLKVKSFFP
DVCQICNMSYVIKLNDEPFLQ
Run BLAST on NCBI

transcript from alignment at sc0000388:117432..118250

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021519 ID=TCONS_00021519|Name=TCONS_00021519|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at sc0000388:117432..118250 (Clytia hemisphaerica)
gggGGGTTGAGCTAAAAGAGGGGGGTGCCATTTTTAAGGGGGGGCTTGAT
ACCCATCTGCCCACGACACCCCTTGCTTGATGGTGCTTGATGGTGGATTG
CTGGCTATCAAGTATCACCTGGACAAACTTTGTTCTGAAGATCAACAGAA
GAGAGAAAGACCACCCTAAACTTTAACACACCGTTAGCCCTGGACTCTCG
AGGTATACAACTAttcatttttatcttaaacatcCAACATCTCAATCAAT
ATCACAGCATAAGGGTCCTGTGGCTGGTCACTCAGGCATCTTGTTAAATC
CTGAGGAACAGTTGTGCATGACAGAAGTTGGGTTCACATGTGCAGCTGAC
CAGGTATAGTTTTTCTGCATTTCGTCCTGATTTCTTCCAAGAGATTTCCC
AGCACCCCACAAATAAGGAACCCTGGTTTGTGTCACGTATTTGATTTCTT
GGATCCATGGCTACTAAACCAACGGATGAAATTGAACCAGAAGGGGAACC
AAATGAAGACGTACAGATTTGGAAACGAATAGTAACAGAGCTATCACTTC
AAGCACCGGATCCCCAGATTAAATCTTGTCTTCAATTGTACAATCCAGAG
AAACCTACAAAATCCATTATCGCTACACTgaccaaaagtttcaaaaaaga
caCAATTCACGACACACTTAACTTCCTATCAAAGCAGGAAGTTGAATCTG
CTAACAAGAATGAACTTGTCCAAAGGCTTTGCCTCAaagtcaaaagcttt
tttccAGATGTATGCCAGATCTGCAACATGTCCTATGTTATCAAACTCAA
TGATGAACCCTTTCTCCAG

Coding sequence (CDS) from alignment at sc0000388:117432..118250

>TCONS_00021519 ID=TCONS_00021519|Name=TCONS_00021519|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0000388:117432..118250 (Clytia hemisphaerica)
ATGGCTACTAAACCAACGGATGAAATTGAACCAGAAGGGGAACCAAATGA
AGACGTACAGATTTGGAAACGAATAGTAACAGAGCTATCACTTCAAGCAC
CGGATCCCCAGATTAAATCTTGTCTTCAATTGTACAATCCAGAGAAACCT
ACAAAATCCATTATCGCTACACTgaccaaaagtttcaaaaaagacaCAAT
TCACGACACACTTAACTTCCTATCAAAGCAGGAAGTTGAATCTGCTAACA
AGAATGAACTTGTCCAAAGGCTTTGCCTCAaagtcaaaagcttttttccA
GATGTATGCCAGATCTGCAACATGTCCTATGTTATCAAACTCAATGATGA
ACCCTTTCTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012065XLOC_012065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021519-exon-sc0000388-1491911889:117432..118250TCONS_00021519-exon-sc0000388-1491911889:117432..118250Clytia hemisphaericaexon
TCONS_00021519-exon-sc0000388-1510915933:117432..118250TCONS_00021519-exon-sc0000388-1510915933:117432..118250Clytia hemisphaericaexon
TCONS_00021519-exon-sc0000388-1575043694:117432..118250TCONS_00021519-exon-sc0000388-1575043694:117432..118250Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021519-proteinTCONS_00021519-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:117432..118250 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52445	0.731785	1.91091	1.16631	1.90961	1.53018	1.99513	1.87219	1.35815	2.08835	1.20578	1.67104	0.926337	1.03134	0.552937	0.466619	0.439885	0.36763	0.185477	0.504668	0.500098	1.01875	0.292874	0.401156	1.40571	1.66766	1.25849	1.60958	0.463363	0.339429
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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