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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021520 ID=TCONS_00021520|Name=TCONS_00021520|organism=Clytia hemisphaerica|type=transcript|length=1259bp
TTGTGCACCTGGTTTCTACAGATCGTATGAGAAAATCGAACATGGTTTCT
CTTGGATATGCATTCGTTGCCAGAAGAACCATCACAAACCCGACTTTGGA
AACCATTTATGTTATCCATGTGAAGGACGACTTTCGATAGCCAACGGAAA
AAGAACGGCGTGTGTGGATCCTTACACAAATGTTTTCGTCAGCTATCAGT
CAAAAGAATTCTACATCATCGGAGTTATCTCACTGGTTGGATCATTGACT
GCCATACTAACTTTGGTAACCTTCATAATCAAAAGAAACACACCTATTGT
TACGACTTCAGATTTCAAAGTTTCAACTTTGCATATATCTATTCAGGCAG
TTACAATGATCATCGTCCCCTTTTTATACTTTATGAATCATATTTGCATT
TCGAAACCATTAGTTTTCACCACCTTATACACCCTCAACATTGGTATTGT
TTTCACCAAGTCACAAAAGCTGCTACAGGCATTTCTTTGCAAGGTAAAAC
TTAGAGCTGGGGAAGCCAAACGCACAGTAATGACTCAGATTTTGACCGTT
GTCATTTTTCTAGTCTCCGTCAACGCTGTATTCTTAGTTTGCCTTTATCA
ACAACAAGTAACCATTCTTGAATTCGAAGATCCTCAGGGAATGACAAGAG
AGTATGTATGCAATACCTATTTTCACAGCAATGTTATAATGATCGCAATT
GCAGTAATCCAACTAATGTGCACGATACAAGCTTTTCGAGGACGACATCT
TCCGAGTGTCATGAATGACGgtgttgttttgatgtttaccACACTCATAT
TGACCACTTCATTTGTTGTTTGCTTCATCATCGTTCCTTTTCAAAGGCCA
ATCGAGAAGGAAATTTCACAATGTCTCGCGATTTTGGCCAATACCATGGT
CATTACATTCCTCATGTACGGACTAAAGACTTACCGTATTCTGTTTCATC
CGGAACAAAACACAAGAGCGTATTTCCGCTATAAGTGTTTGAAAGGTATG
AGACAAGACGTCAATCAAAGAATCGAGATGAGATAGTGAATATGTTAGTT
ATAAAACACTTGAAGTATTATTTAATTATTATTCGTATAAAAATTAATTA
CCAAAAACGTTCCTAAAAAACTAACGAAAAATCGAACTTTTCAGTGAAGT
GATGAACTGAATCGAATGTATGTCCCAATATATTTAGCAGTAGAGGCAAG
AGTGGCTACATCTTTTATTGGAACAATTTTTTTAGCATAcacgttatttt
tataagaac Run BLAST on NCBI protein sequence of TCONS_00021520-protein >TCONS_00021520-protein ID=TCONS_00021520-protein|Name=TCONS_00021520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
CAPGFYRSYEKIEHGFSWICIRCQKNHHKPDFGNHLCYPCEGRLSIANGK
RTACVDPYTNVFVSYQSKEFYIIGVISLVGSLTAILTLVTFIIKRNTPIV
TTSDFKVSTLHISIQAVTMIIVPFLYFMNHICISKPLVFTTLYTLNIGIV
FTKSQKLLQAFLCKVKLRAGEAKRTVMTQILTVVIFLVSVNAVFLVCLYQ
QQVTILEFEDPQGMTREYVCNTYFHSNVIMIAIAVIQLMCTIQAFRGRHL
PSVMNDGVVLMFTTLILTTSFVVCFIIVPFQRPIEKEISQCLAILANTMV
ITFLMYGLKTYRILFHPEQNTRAYFRYKCLKGMRQDVNQRIEMR Run BLAST on NCBI transcript from alignment at sc0000388:136166..137424 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021520 ID=TCONS_00021520|Name=TCONS_00021520|organism=Clytia hemisphaerica|type=transcript|length=1259bp|location=Sequence derived from alignment at sc0000388:136166..137424 (Clytia hemisphaerica)
gttcttataaaaataacgtgTATGCTAAAAAAATTGTTCCAATAAAAGAT
GTAGCCACTCTTGCCTCTACTGCTAAATATATTGGGACATACATTCGATT
CAGTTCATCACTTCACTGAAAAGTTCGATTTTTCGTTAGTTTTTTAGGAA
CGTTTTTGGTAATTAATTTTTATACGAATAATAATTAAATAATACTTCAA
GTGTTTTATAACTAACATATTCACTATCTCATCTCGATTCTTTGATTGAC
GTCTTGTCTCATACCTTTCAAACACTTATAGCGGAAATACGCTCTTGTGT
TTTGTTCCGGATGAAACAGAATACGGTAAGTCTTTAGTCCGTACATGAGG
AATGTAATGACCATGGTATTGGCCAAAATCGCGAGACATTGTGAAATTTC
CTTCTCGATTGGCCTTTGAAAAGGAACGATGATGAAGCAAACAACAAATG
AAGTGGTCAATATGAGTGTggtaaacatcaaaacaacacCGTCATTCATG
ACACTCGGAAGATGTCGTCCTCGAAAAGCTTGTATCGTGCACATTAGTTG
GATTACTGCAATTGCGATCATTATAACATTGCTGTGAAAATAGGTATTGC
ATACATACTCTCTTGTCATTCCCTGAGGATCTTCGAATTCAAGAATGGTT
ACTTGTTGTTGATAAAGGCAAACTAAGAATACAGCGTTGACGGAGACTAG
AAAAATGACAACGGTCAAAATCTGAGTCATTACTGTGCGTTTGGCTTCCC
CAGCTCTAAGTTTTACCTTGCAAAGAAATGCCTGTAGCAGCTTTTGTGAC
TTGGTGAAAACAATACCAATGTTGAGGGTGTATAAGGTGGTGAAAACTAA
TGGTTTCGAAATGCAAATATGATTCATAAAGTATAAAAAGGGGACGATGA
TCATTGTAACTGCCTGAATAGATATATGCAAAGTTGAAACTTTGAAATCT
GAAGTCGTAACAATAGGTGTGTTTCTTTTGATTATGAAGGTTACCAAAGT
TAGTATGGCAGTCAATGATCCAACCAGTGAGATAACTCCGATGATGTAGA
ATTCTTTTGACTGATAGCTGACGAAAACATTTGTGTAAGGATCCACACAC
GCCGTTCTTTTTCCGTTGGCTATCGAAAGTCGTCCTTCACATGGATAACA
TAAATGGTTTCCAAAGTCGGGTTTGTGATGGTTCTTCTGGCAACGAATGC
ATATCCAAGAGAAACCATGTTCGATTTTCTCATACGATCTGTAGAAACCA
GGTGCACAA Coding sequence (CDS) from alignment at sc0000388:136166..137424 >TCONS_00021520 ID=TCONS_00021520|Name=TCONS_00021520|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0000388:136166..137424 (Clytia hemisphaerica)
CTATCTCATCTCGATTCTTTGATTGACGTCTTGTCTCATACCTTTCAAAC
ACTTATAGCGGAAATACGCTCTTGTGTTTTGTTCCGGATGAAACAGAATA
CGGTAAGTCTTTAGTCCGTACATGAGGAATGTAATGACCATGGTATTGGC
CAAAATCGCGAGACATTGTGAAATTTCCTTCTCGATTGGCCTTTGAAAAG
GAACGATGATGAAGCAAACAACAAATGAAGTGGTCAATATGAGTGTggta
aacatcaaaacaacacCGTCATTCATGACACTCGGAAGATGTCGTCCTCG
AAAAGCTTGTATCGTGCACATTAGTTGGATTACTGCAATTGCGATCATTA
TAACATTGCTGTGAAAATAGGTATTGCATACATACTCTCTTGTCATTCCC
TGAGGATCTTCGAATTCAAGAATGGTTACTTGTTGTTGATAAAGGCAAAC
TAAGAATACAGCGTTGACGGAGACTAGAAAAATGACAACGGTCAAAATCT
GAGTCATTACTGTGCGTTTGGCTTCCCCAGCTCTAAGTTTTACCTTGCAA
AGAAATGCCTGTAGCAGCTTTTGTGACTTGGTGAAAACAATACCAATGTT
GAGGGTGTATAAGGTGGTGAAAACTAATGGTTTCGAAATGCAAATATGAT
TCATAAAGTATAAAAAGGGGACGATGATCATTGTAACTGCCTGAATAGAT
ATATGCAAAGTTGAAACTTTGAAATCTGAAGTCGTAACAATAGGTGTGTT
TCTTTTGATTATGAAGGTTACCAAAGTTAGTATGGCAGTCAATGATCCAA
CCAGTGAGATAACTCCGATGATGTAGAATTCTTTTGACTGATAGCTGACG
AAAACATTTGTGTAAGGATCCACACACGCCGTTCTTTTTCCGTTGGCTAT
CGAAAGTCGTCCTTCACATGGATAACATAAATGGTTTCCAAAGTCGGGTT
TGTGATGGTTCTTCTGGCAACGAATGCATATCCAAGAGAAACCATGTTCG
ATTTTCTCATACGATCTGTAGAAACCAGGTGCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021520-exon-sc0000388-1491911889:136166..137424 | TCONS_00021520-exon-sc0000388-1491911889:136166..137424 | Clytia hemisphaerica | exon |
| TCONS_00021520-exon-sc0000388-1510915933:136166..137424 | TCONS_00021520-exon-sc0000388-1510915933:136166..137424 | Clytia hemisphaerica | exon |
| TCONS_00021520-exon-sc0000388-1575043694:136166..137424 | TCONS_00021520-exon-sc0000388-1575043694:136166..137424 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000388 | supercontig | sc0000388:136166..137424 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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