TCONS_00021529 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021529
Unique Name	TCONS_00021529
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1132

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000389:154741..159009+

transcript sequence

>TCONS_00021529 ID=TCONS_00021529|Name=TCONS_00021529|organism=Clytia hemisphaerica|type=transcript|length=1132bp
caaaatctcatttttgaGACTAACAAATAACTCAAAATAAGTCTGAATAC
AGTTCCCTGTTCCCTGTAATTTCTATCTGGAAATAATATattgaaagtga
ttttttcatttatgaaCAAATAGTATTCTCTTTAAATATGCATGAAAAGA
AAAGAGTTGGAATAGTTGGTTACGGCCATATAgGTCAATACATTTTTGAC
GAAGTTCAAAAAAGTGAAGACTTGTGTGTTGACTTTGTGTGGAATAGATC
CTTTGACAAAATCAAACATCTTCCAAAAGAAGCTCAACTTGAAAATCTTG
ATGAATTTAGAACGAGAAAGGTTGACATCATCTTAGAAGTTGCACATATC
ACAACAACTCAAAAATATGGAGAACAATTTTTAGAACATGCAAATTTTAT
GATAGGATCTCCTACTGCTTTGGCTGATGAGGATCTTGAAACCAGACTGA
GAAAGAAATCCATAGAAACTGGTTATGGATTGTTTGTTCCTGCTGGTGCA
TTTTGGGGTGGTGAAGATGTACAAAAGATGGCTGATCAAGGGTCATTGAA
GGGTTTGAGAGTGACAATGAAAAAACATCCATCTTGTTTCAAAGTCCTTG
GCAAAGTAGCTGAAAGGAATGAAAAGGTTGGAGATGAACCTGTTGTATTA
TACGAAGGTCCAGTTCGAAAGCTTTGTCCGTTGGCACCTGCTAATGTAAA
CACGATGGCCTGTGCTGCACTAGCGGCACATAATCTAGGTTTTGATAAAG
TTCAAGGATGTCTTGTAGCTGATCGAAGtttgaaaTGCCACATAGTAGAG
ATAGAAGTGACAGGACCTCCTTTAGGTGATGATGGTGAAGAATTCACAGT
CAAAACAGTTCGAACGAATCCAAGCAAAACTGGAGTTGTTACTGGTAACG
CAACGTATGCATCCTTCTTCCAAAGTCTAAGGCGTGCATATGGAAAAGGT
GGTGGTATCCATttatgctgattcagcaaaaacGAAATTCTAGAGTATTT
TTATAGCTTTATTGTAGTTAGGTAGCATAGATTTATTATCAAGTTATTAT
TAATTATCATTTATTTTTGTATACCAATTAATAGGAgattagttttttta
taaaaatcatctATCACAAATTAAAGAGTAAT

Run BLAST on NCBI

transcript from alignment at sc0000389:154741..159009+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021529 ID=TCONS_00021529|Name=TCONS_00021529|organism=Clytia hemisphaerica|type=transcript|length=4269bp|location=Sequence derived from alignment at sc0000389:154741..159009+ (Clytia hemisphaerica)
caaaatctcatttttgaGACTAACAAATAACTCAAAATAAGTCTGAATAC
AGTTCCCTGTTCCCTGTAATTTCTATCTGGAAATAATATattgaaagtga
ttttttcatttatgaaCAAATAGTATTCTCTTTAAATATGCATGAAAAGA
AAAGAGTTGGAATAGTTGGTTACGGCCATATAggtgagttttttcaaaat
gtttttccagaaataaaatttttgctcttttttttccttaaaatgtaaTC
TTTATATTCTCCTCCTTAGTTGAACAACCTTCATCCGTAGCCTTTGACCT
TTCACGTGCCCGCTCATCACCTATGTATATCGGTCTCTCCTGTAGCCTTT
AattgatatataaaaatgattaattctaaataaattttatagGTTTTACT
TTTAAAAGGCTTCTATAATTTTTCATTAAGGTCAATACATTTTTGACGAA
GTTCAAAAAAGTGAAGACTTGTGTGTTGACTTTGTGTGGAATAGATCCTT
TGACAAAATCAAACATCTTCCAAAAGAAGCTCAACTTGAAAATCTTGATG
AATTTAGAACGAGGTGAAAATACTTTTCTTTCTGATCTATCTATGATTTT
TCGGAAGGACTAAATGAATCTTTCTAATCCTTTAAACCCAGAGGAAACGA
AATATGCTGTCAAAACCACTTAAAAATTGGCTAAACTTTTTGATGGAAAA
CACTTTGAAactattgaaaaatatattttagaaACCTTCTCATTCTTGTT
TCATATTCTAATGTTTCTTCACTAGAAAGGTTGACATCATCTTAGAAGTT
GCACATATCACAACAACTCAAAAATATGGAGAACAATTTTTAGAACATGC
AAATTTTATGGTAAAGTCTTCATTATTGTGAGCTTTTTNTTTTTCATTAA
GGTCAATACATTTTTGACGAAGTTCAAAAAAGTGAAGACTTGTGTGTTGA
CTTTGTGTGGAATAGATCCTTTGACAAAATCAAACATCTTCCAAAAGAAG
CTCAACTTGAAAATCTTGATGAATTTAGAACGAGGTGAAAATACTTTTCT
TTCTGATCTATCTATGATTTTTCGGAAGGACTAAATGAATCTTTCTAATC
CTTTAAACCCAGAGGAAACGAAATATGCTGTCAAAACCACTTAAAAATTG
GCTAAACTTTTTGATGGAAAACACTTTGAAactattgaaaaatatatttt
agaaACCTTCTCATTCTTGTTTCATATTCTAATGTTTCTTCACTAGAAAG
GTTGACATCATCTTAGAAGTTGCACATATCACAACAACTCAAAAATATGG
AGAACAATTTTTAGAACATGCAAATTTTATGGTAAAGTCTTCATTCTTGT
GAGCTTTTTATGAGATGTCTTCTGTCTTTAAGATGTGGAAGATCTTGAGC
AATGTTTTAGTTTCAAAAACTCAAATCTTATATTTATAATGTCTGTTTGG
TTTCTTCTGGCAGTGAATGAAGTTCAATGCAATtgattgtgaaaaaaaaa
tgtcaacaaaaaaaaacctttcattcacaaatttgacaaattcgCTTTCA
ACATGTCGAAAGATAAATTGACTCTCAGTATCTCTCTTTCATCAGATAGG
ATCTCCTACTGCTTTGGCTGATGAGGATCTTGAAACCAGACTGAGAAAGA
AATCCATAGAAACTGGTTATGGATTGTTTGTTCCTGCTGGTGCATTTTGG
GGTGGTGAAGATGTACAAAAGATGGCTGATCAAGGGTCATTGAAGGTGAT
CTTAGACAAAATTAAGTCTCTAAAAAGACGAGACAATATTTATTTCTATG
AGGATGGATGAGCTTTTATAAAGAGtaaaaaataagtatttttGATACAC
CTATCAACCCAGTCCGCTTTTTAGGGGACTTGTAATAAATTTACGAGGAG
GATTTGAGGTGAACGCCATTTTTTAGGCCATATCTAAATCAAACCAACAA
ACTCCTGCCAAAACTCAGTGATATTTTACCAAGTCTCTGTGGTGGGGTGC
AAactatttttagcatttgaaTTGCTTAACTATATTGATGTTACTTTATT
GCTTCAATGCAAGGGTATCTTTCAATCTTATATGTTTGACAATTGAACTC
CTACACTTATATTTTCAATACTGTTGTTTAGAAGAAGTCtccttgttttt
tttgtcaccAGGTTCCTCAAAAGCTGACCACGCCGCTAAGGGTTGATAGA
TGGTGTATAGCGTTTAAAAAAAGGGTTGATATAATTTAGAATCTGCGGTA
GATGTTGAAGGGTTAATAAATTGATGCGCCTTTTAGAGTTGAGGTAAATC
TTAACATAATATGTTTTCATTTCCAGGGTTTGAGAGTGACAATGAAAAAA
CATCCATCTTGTTTCAAAGTCCTTGGCAAAGTAGCTGAAAGGAATGAAAA
GGTTGGAGATGAACCTGTTGTATTATACGAAGGTTAGAtaggtctttctt
tggtttaTCTATACTACTTATATGACTTGCTCAAAATCCTCAACGTATTA
ATTCTAGAGTAAAATTAACCAAATTTTGTACAATCTTTTGCTTACATTTA
GGTCCAGTTCGAAAGCTTTGTCCGTTGGCACCTGCTAATGTAAACACGAT
GGCCTGTGCTGCACTAGCGGCACATAATCTAGGTTTTGATAAAGTTCAAG
GATGTCTTGTAGCTGATCGAAGGTATACAGATCTTGAACGTGGATATCca
agctgcaaattattttcttattttgaagaTTCTGCTATTTACAGCTTGGT
CTACCTAGATGCTCTTAAACCCCTTCTGATATATTGGAATGTAAATTGCT
TTAGAAGGACCTTAAGGTAGAGCAGAAACATCATAAATTTAAACaaagtt
tacagcctggatatcaaGGCTAAACAGATCATGAACGTGGTTCGAATAAA
TATAATTGAATTGAGGTTTTTTTATCATTACCTTTGttatgaaaatgaag
aataagACTAAgatttatttttggaaattaaacACAATCATCAGCCAAAT
AAAATTATTGATCATAAATTTAGTGATAATTGTtccagtgtttttttttt
cagtttgaaaTGCCACATAGTAGAGATAGAAGTGACAGGACCTCCTTTAG
GTGATGATGGTGAAGAATTCACAGTCAAAACAGTTCGAACGAATCCAAGC
AAAACTGGAGTTGTTACTGGTAACGCAACGTATGCATCCTTCTTCCAAAG
TCTAAGGCGTaagtctttttttccaaaactaTTTCTGTTCAATACAAAAT
CAGTACAGGTTATCTTGCCAATTCGAACTCAAATGGGAACtttaatttgt
tcgagttaaagagagattcgaattatagaaagtatttttacgAGAACTGA
TAATTAGTTCGAATTGAGAACgattcaaataatagaagttcaaatttggg
aaatcctttttttttttttttttgggtgtgttttttttttgggggggggg
cttttgTATCCAAGTTTAGGTATTATCAcattttttttgggttttttttt
ttttttggggggggggcttttgTATCCAAGTTTAGGTATTATCAcatttt
ttttgggtttttttttttttttggggggggggcttttgTATCCAAGTTTA
GGTATTATCAcattttttttgggtttttttttttttttggggggggggct
tttgTATCCAAGTTTAGGTATTATCAcattttttttgggttttttttttt
ttttggggggggggcttttgTATCCAAGTTTAGGTATTATCAcatttttt
ttgggtttttttttttttttggggggggggcttttgTATCCAAGTTTAGG
TATTATCAcattttttttgggtttttttttttttttggggggggggcttt
tgTATCCAAGTTTAGGTATTATCAcattttttttgggttttttttttttt
ttgggggggggggcttttgtATCCAAGTTTAGGTATTATCACattatttt
cgtgtttttttaaGTCTGGTGGTTTAACAAAATCTTCcagggaaaatttt
tattgaaaattttaacaaaatctttcaggggaaattgtttttgaaagtta
CTTTATCACTTTCTTTTTAGGTGCATATGGAAAAGGTGGTGGTATCCATt
tatgctgattcagcaaaaacGAAATTCTAGAGTATTTTTATAGCTTTATT
GTAGTTAGGTAGCATAGATTTATTATCAAGTTATTATTAATTATCATTTA
TTTTTGTATACCAATTAATAGGAgattagtttttttataaaaatcatctA
TCACAAATTAAAGAGTAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012074	XLOC_012074	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000389	supercontig	sc0000389:154741..159009 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.41468	2.74292	0.393822	0.385295	0	0	2.06323	0.485159	0.340078	0	0.408565	0	0.268151	0.240233	0.592514	0.423905	0	0	0	0	1.00888	1.71136	2.29145	0.725144	0	1.54458	2.20459	0	2.64026	1.57334

Blast

[Close]

BLAST of TCONS_00021529 vs. Swiss-Prot (Human)
Match: ASPD (Putative L-aspartate dehydrogenase OS=Homo sapiens GN=ASPDH PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 1.966e-66
Identity = 126/279 (45.16%), Postives = 169/279 (60.57%), Query Frame = 3

Query:  153 RVGIVGYGHIGQYIFDEV--QKSE-DLCVDFVWNRSFDKIK-HLPKEAQLENLDEFRTRKVDIILEVAHITTTQKYGEQFLEHANFMIGSPTALADEDLETRLRKKSIETGYGLFVPAGAFWGGEDVQKMADQGSLKGLRVTMKKHPSCFKVLGKVAERNEKVGDEPVVLYEGPVRKLCPLAPANVNTMACAALAAHNLGFDKVQGCLVADRSLK-CHIVEIEVTGPPLGDDGEEFTVKTVRTNPSKTGVVTGNATYASFFQSLRRA--YGKGGGIHLC 968
            RVG+VGYG +GQ +   +  Q  E  L + FVWNR   ++   +P   QL+NL     R+ D+++EVAH     + G Q L HAN ++GSP+AL+D+  E +L + S    + +FV  GA WG ED++++   G L+ LRVTM  HP  F++ G +A  +        VLYEGPVR LCP AP N NTMA AALAA +LGFD V G LVAD SL   H+V++E++G P G  G  F V T R NP++ G VTG+AT  +F+QSL          GIHLC
Sbjct:    8 RVGVVGYGRLGQSLVSRLLAQGPELGLELVFVWNRDPGRMAGSVPPSLQLQNLAALGERRPDLVVEVAHPKIIHESGAQILRHANLLVGSPSALSDQTTERQLLEASQHWDHAVFVARGALWGAEDIRRLDAAGGLRSLRVTMATHPDGFRLEGPLAAAHSP--GPCTVLYEGPVRGLCPFAPRNSNTMAAAALAAPSLGFDGVIGVLVADTSLTDMHVVDVELSG-PRGPTGRSFAVHTRRENPAEPGAVTGSATVTAFWQSLLACCQLPSRPGIHLC 283

The following BLAST results are available for this feature:

BLAST of TCONS_00021529 vs. Swiss-Prot (Human)

BLAST of TCONS_00021529 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASPD	1.966e-66	45.16	Putative L-aspartate dehydrogenase OS=Homo sapiens...	[more]

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TCONS_00021529 (transcript) - C. hemisphaerica