TCONS_00021532 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021532
Unique Name	TCONS_00021532
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	838

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000389:155278..159009+

transcript sequence

>TCONS_00021532 ID=TCONS_00021532|Name=TCONS_00021532|organism=Clytia hemisphaerica|type=transcript|length=838bp
GAAAATCTTGATGAATTTAGAACGAGGTTGACATCATCTTAGAAGTTGCA
CATATCACAACAACTCAAAAATATGGAGAACAATTTTTAGAACATGCAAA
TTTTATGATAGGATCTCCTACTGCTTTGGCTGATGAGGATCTTGAAACCA
GACTGAGAAAGAAATCCATAGAAACTGGTTATGGATTGTTTGTTCCTGCT
GGTGCATTTTGGGGTGGTGAAGATGTACAAAAGATGGCTGATCAAGGGTC
ATTGAAGGGTTTGAGAGTGACAATGAAAAAACATCCATCTTGTTTCAAAG
TCCTTGGCAAAGTAGCTGAAAGGAATGAAAAGGTTGGAGATGAACCTGTT
GTATTATACGAAGGTCCAGTTCGAAAGCTTTGTCCGTTGGCACCTGCTAA
TGTAAACACGATGGCCTGTGCTGCACTAGCGGCACATAATCTAGGTTTTG
ATAAAGTTCAAGGATGTCTTGTAGCTGATCGAAGtttgaaaTGCCACATA
GTAGAGATAGAAGTGACAGGACCTCCTTTAGGTGATGATGGTGAAGAATT
CACAGTCAAAACAGTTCGAACGAATCCAAGCAAAACTGGAGTTGTTACTG
GTAACGCAACGTATGCATCCTTCTTCCAAAGTCTAAGGCGTGCATATGGA
AAAGGTGGTGGTATCCATttatgctgattcagcaaaaacGAAATTCTAGA
GTATTTTTATAGCTTTATTGTAGTTAGGTAGCATAGATTTATTATCAAGT
TATTATTAATTATCATTTATTTTTGTATACCAATTAATAGGAgattagtt
tttttataaaaatcatctATCACAAATTAAAGAGTAAT

Run BLAST on NCBI

transcript from alignment at sc0000389:155278..159009+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021532 ID=TCONS_00021532|Name=TCONS_00021532|organism=Clytia hemisphaerica|type=transcript|length=3732bp|location=Sequence derived from alignment at sc0000389:155278..159009+ (Clytia hemisphaerica)
GAAAATCTTGATGAATTTAGAACGAGGTGAAAATACTTTTCTTTCTGATC
TATCTATGATTTTTCGGAAGGACTAAATGAATCTTTCTAATCCTTTAAAC
CCAGAGGAAACGAAATATGCTGTCAAAACCACTTAAAAATTGGCTAAACT
TTTTGATGGAAAACACTTTGAAactattgaaaaatatattttagaaACCT
TCTCATTCTTGTTTCATATTCTAATGTTTCTTCACTAGAAAGGTTGACAT
CATCTTAGAAGTTGCACATATCACAACAACTCAAAAATATGGAGAACAAT
TTTTAGAACATGCAAATTTTATGGTAAAGTCTTCATTATTGTGAGCTTTT
TNTTTTTCATTAAGGTCAATACATTTTTGACGAAGTTCAAAAAAGTGAAG
ACTTGTGTGTTGACTTTGTGTGGAATAGATCCTTTGACAAAATCAAACAT
CTTCCAAAAGAAGCTCAACTTGAAAATCTTGATGAATTTAGAACGAGGTG
AAAATACTTTTCTTTCTGATCTATCTATGATTTTTCGGAAGGACTAAATG
AATCTTTCTAATCCTTTAAACCCAGAGGAAACGAAATATGCTGTCAAAAC
CACTTAAAAATTGGCTAAACTTTTTGATGGAAAACACTTTGAAactattg
aaaaatatattttagaaACCTTCTCATTCTTGTTTCATATTCTAATGTTT
CTTCACTAGAAAGGTTGACATCATCTTAGAAGTTGCACATATCACAACAA
CTCAAAAATATGGAGAACAATTTTTAGAACATGCAAATTTTATGGTAAAG
TCTTCATTCTTGTGAGCTTTTTATGAGATGTCTTCTGTCTTTAAGATGTG
GAAGATCTTGAGCAATGTTTTAGTTTCAAAAACTCAAATCTTATATTTAT
AATGTCTGTTTGGTTTCTTCTGGCAGTGAATGAAGTTCAATGCAATtgat
tgtgaaaaaaaaatgtcaacaaaaaaaaacctttcattcacaaatttgac
aaattcgCTTTCAACATGTCGAAAGATAAATTGACTCTCAGTATCTCTCT
TTCATCAGATAGGATCTCCTACTGCTTTGGCTGATGAGGATCTTGAAACC
AGACTGAGAAAGAAATCCATAGAAACTGGTTATGGATTGTTTGTTCCTGC
TGGTGCATTTTGGGGTGGTGAAGATGTACAAAAGATGGCTGATCAAGGGT
CATTGAAGGTGATCTTAGACAAAATTAAGTCTCTAAAAAGACGAGACAAT
ATTTATTTCTATGAGGATGGATGAGCTTTTATAAAGAGtaaaaaataagt
atttttGATACACCTATCAACCCAGTCCGCTTTTTAGGGGACTTGTAATA
AATTTACGAGGAGGATTTGAGGTGAACGCCATTTTTTAGGCCATATCTAA
ATCAAACCAACAAACTCCTGCCAAAACTCAGTGATATTTTACCAAGTCTC
TGTGGTGGGGTGCAAactatttttagcatttgaaTTGCTTAACTATATTG
ATGTTACTTTATTGCTTCAATGCAAGGGTATCTTTCAATCTTATATGTTT
GACAATTGAACTCCTACACTTATATTTTCAATACTGTTGTTTAGAAGAAG
TCtccttgttttttttgtcaccAGGTTCCTCAAAAGCTGACCACGCCGCT
AAGGGTTGATAGATGGTGTATAGCGTTTAAAAAAAGGGTTGATATAATTT
AGAATCTGCGGTAGATGTTGAAGGGTTAATAAATTGATGCGCCTTTTAGA
GTTGAGGTAAATCTTAACATAATATGTTTTCATTTCCAGGGTTTGAGAGT
GACAATGAAAAAACATCCATCTTGTTTCAAAGTCCTTGGCAAAGTAGCTG
AAAGGAATGAAAAGGTTGGAGATGAACCTGTTGTATTATACGAAGGTTAG
AtaggtctttctttggtttaTCTATACTACTTATATGACTTGCTCAAAAT
CCTCAACGTATTAATTCTAGAGTAAAATTAACCAAATTTTGTACAATCTT
TTGCTTACATTTAGGTCCAGTTCGAAAGCTTTGTCCGTTGGCACCTGCTA
ATGTAAACACGATGGCCTGTGCTGCACTAGCGGCACATAATCTAGGTTTT
GATAAAGTTCAAGGATGTCTTGTAGCTGATCGAAGGTATACAGATCTTGA
ACGTGGATATCcaagctgcaaattattttcttattttgaagaTTCTGCTA
TTTACAGCTTGGTCTACCTAGATGCTCTTAAACCCCTTCTGATATATTGG
AATGTAAATTGCTTTAGAAGGACCTTAAGGTAGAGCAGAAACATCATAAA
TTTAAACaaagtttacagcctggatatcaaGGCTAAACAGATCATGAACG
TGGTTCGAATAAATATAATTGAATTGAGGTTTTTTTATCATTACCTTTGt
tatgaaaatgaagaataagACTAAgatttatttttggaaattaaacACAA
TCATCAGCCAAATAAAATTATTGATCATAAATTTAGTGATAATTGTtcca
gtgttttttttttcagtttgaaaTGCCACATAGTAGAGATAGAAGTGACA
GGACCTCCTTTAGGTGATGATGGTGAAGAATTCACAGTCAAAACAGTTCG
AACGAATCCAAGCAAAACTGGAGTTGTTACTGGTAACGCAACGTATGCAT
CCTTCTTCCAAAGTCTAAGGCGTaagtctttttttccaaaactaTTTCTG
TTCAATACAAAATCAGTACAGGTTATCTTGCCAATTCGAACTCAAATGGG
AACtttaatttgttcgagttaaagagagattcgaattatagaaagtattt
ttacgAGAACTGATAATTAGTTCGAATTGAGAACgattcaaataatagaa
gttcaaatttgggaaatcctttttttttttttttttgggtgtgttttttt
tttggggggggggcttttgTATCCAAGTTTAGGTATTATCAcattttttt
tgggtttttttttttttttggggggggggcttttgTATCCAAGTTTAGGT
ATTATCAcattttttttgggtttttttttttttttggggggggggctttt
gTATCCAAGTTTAGGTATTATCAcattttttttgggtttttttttttttt
tggggggggggcttttgTATCCAAGTTTAGGTATTATCAcattttttttg
ggtttttttttttttttggggggggggcttttgTATCCAAGTTTAGGTAT
TATCAcattttttttgggtttttttttttttttggggggggggcttttgT
ATCCAAGTTTAGGTATTATCAcattttttttgggtttttttttttttttg
gggggggggcttttgTATCCAAGTTTAGGTATTATCAcattttttttggg
tttttttttttttttgggggggggggcttttgtATCCAAGTTTAGGTATT
ATCACattattttcgtgtttttttaaGTCTGGTGGTTTAACAAAATCTTC
cagggaaaatttttattgaaaattttaacaaaatctttcaggggaaattg
tttttgaaagttaCTTTATCACTTTCTTTTTAGGTGCATATGGAAAAGGT
GGTGGTATCCATttatgctgattcagcaaaaacGAAATTCTAGAGTATTT
TTATAGCTTTATTGTAGTTAGGTAGCATAGATTTATTATCAAGTTATTAT
TAATTATCATTTATTTTTGTATACCAATTAATAGGAgattagttttttta
taaaaatcatctATCACAAATTAAAGAGTAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012074	XLOC_012074	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000389	supercontig	sc0000389:155278..159009 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.47178	1.47449	0.567058	0.49873	0.93458	1.85468	1.00134	2.76421	5.4366	7.07785	3.32289	3.87355	4.82338	4.9343	3.88867	4.71059	9.65721	8.22703	1.9906	3.10316	0.534271	1.55333	2.46809	3.28886	5.5839	0.885503	0.387288	0.334393	2.45885	2.37971

Blast

[Close]

BLAST of TCONS_00021532 vs. Swiss-Prot (Human)
Match: ASPD (Putative L-aspartate dehydrogenase OS=Homo sapiens GN=ASPDH PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.794e-54
Identity = 103/218 (47.25%), Postives = 136/218 (62.39%), Query Frame = 3

Query:   30 DIILEVAHITTTQKYGEQFLEHANFMIGSPTALADEDLETRLRKKSIETGYGLFVPAGAFWGGEDVQKMADQGSLKGLRVTMKKHPSCFKVLGKVAERNEKVGDEPVVLYEGPVRKLCPLAPANVNTMACAALAAHNLGFDKVQGCLVADRSL-KCHIVEIEVTGPPLGDDGEEFTVKTVRTNPSKTGVVTGNATYASFFQSLRRA--YGKGGGIHLC 674
            D+++EVAH     + G Q L HAN ++GSP+AL+D+  E +L + S    + +FV  GA WG ED++++   G L+ LRVTM  HP  F++ G +A  +        VLYEGPVR LCP AP N NTMA AALAA +LGFD V G LVAD SL   H+V++E++G P G  G  F V T R NP++ G VTG+AT  +F+QSL          GIHLC
Sbjct:   69 DLVVEVAHPKIIHESGAQILRHANLLVGSPSALSDQTTERQLLEASQHWDHAVFVARGALWGAEDIRRLDAAGGLRSLRVTMATHPDGFRLEGPLAAAHSP--GPCTVLYEGPVRGLCPFAPRNSNTMAAAALAAPSLGFDGVIGVLVADTSLTDMHVVDVELSG-PRGPTGRSFAVHTRRENPAEPGAVTGSATVTAFWQSLLACCQLPSRPGIHLC 283

The following BLAST results are available for this feature:

BLAST of TCONS_00021532 vs. Swiss-Prot (Human)

BLAST of TCONS_00021532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASPD	2.794e-54	47.25	Putative L-aspartate dehydrogenase OS=Homo sapiens...	[more]

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TCONS_00021532 (transcript) - C. hemisphaerica