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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021535 ID=TCONS_00021535|Name=TCONS_00021535|organism=Clytia hemisphaerica|type=transcript|length=1393bp
CAGGAGAATGAATAAACgtaatgaataaataaaaatcatgAATACTAAAG
ACGAGCAAACTATTTGATGTTCAAAACAGTCTGGTATTGTCGCAGTTTCT
TTAAAGATGTGAATACCTTTCATAGACAAAGATCAAGAAATAGATACCTC
TGCAGAACACTAAAAATGTCGACGGAAACTACACCATCGATGGAATCTGA
AAAGTACCCTTTACCGAAGCTAGAAGATGGCCGTTTCCAGCTCCCTTGGG
GTAGAAAACGTCCTGGTGTACATCAAGTCTTATGGGGTTTCTATAAAAGC
AAAGAGACGTCTGGTATTCCTTCCAAACAGGAATTGGATGCCATAGAGGc
gatgaaaattcaaaagttagacACCGAGAAATTATTCAACCCTCCGTCAA
CTAACATTCAAGCTACATGGTTAGGCCACGCCAGCTATCTGATACAATTC
TCCGGAATTAACATTTTATTTGATCCCGTATTTGGTGATCGTATCGGACC
GGCTACTTCTTATGGGGCTGGACAAGCAAGATATCGGAAGTGTCCAGTGA
CGGACGTATCCGAGCTTCCACCGATCGATATTGTTTGTGTATCGCACGAT
CATTATGATCATTTAGACCGCGCAACCGTCGAGCGGCTGCAAGCGGTCCA
TGACGATACTATACACTGGTTTCTACCATTGAAATTTGATGACTGGATGA
ACAGTCTAGGACTAAAAAATGTGAACGTCAAAACCTTTAATTGGTGGGAT
GAGGACAATATTGAAATCAAGAATAAGTCGGAAGAAGTTAAGGCTACCAT
CGCTTTCGTTCCTGCTCAGCATTGGTGCTTAAGGGGGCTTACACGGAAAG
GTTTCATTCCTTCATCAGATGAGAACACCCGTCTTTGGGGTGGATGGATT
GTTAAATCAGGTGGTAAAACGATTTATCATGCAGGTGATACAGGATATTG
TCATATTTTTAAAAGCATTGGTGAAAGATATGGTGAAATTGATTTATCTT
TGTTGCCGATTGGAGCATACACTCCAAGAGAAGTGTTAAAGTTTCAACAT
ATCAATCCAGAGGAGGCCGTACTGATTCACCAAGATGTTCGATCCAAACA
AAGTCTTGGTATGCATTGGGGAACCTTCGAATTGACAAAAGAGCCATACC
TTGAGCCTCCTGATCGCTTGAAGAAAGCCATGGAAGAGAAAGAACTCAAC
CCAGAACATTTTATAGCTTTAAAACATGGTGAAACGAAATTGATAGGAGA
TGTGAGTGAAACTGTACTACCGAAACAAGAGATTCTTGAAACAGAACTGG
AATTAAATAAATTGTGAATATTTCCACGATTTTCCATGGATTTGGGAGGT
ACTTTCGAtggaatttcaaaatattttgtgaaaattatcaaat Run BLAST on NCBI transcript from alignment at sc0000389:159147..166184+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021535 ID=TCONS_00021535|Name=TCONS_00021535|organism=Clytia hemisphaerica|type=transcript|length=7038bp|location=Sequence derived from alignment at sc0000389:159147..166184+ (Clytia hemisphaerica)
CAGGAGAATGAATAAACgtaatgaataaataaaaatcatgAATACTAAAG
ACGAGCAAACTATTTGATGTTCAAAACAGTCTGGTATTGTCGCAGTTTCT
TTAAAGATGTGAATACCTTTCATAGACAAATGTAAGTCAATTTTCATTGG
TTTTGAAAACGTGTTTTTATAACAGTATTAATAAAAGACCCCTACAGATC
AAAACTTTTGTGATGTAGTAGGGATCACTCAGGCAAGTTGCACCCACTTT
CTCTTATAATTCGTATTGAGAAAATCTTTGTTTCTTAACATATTATTACA
CCGTATATTAAAGTGAAATATTTTCTATAGCTAGTCTCGATATCTTCGCT
TGTAGTCTTACGCTACGTTGCTACGTGAGTAAGTAAAGTAACGCATGTGA
TTTCAAAGATTATTTGTTTACCGTTTAATTGTGATCGGAAACTATCTTTC
TTTggttagtggtcagagaggaaaaatactttttcaatcagtgattccaa
ctccaatattatttctttctctaaagaagggtgtcggaattagatgaggg
atgtcgatattagaccaacttatgatATCTCTCTTCTTATACAGATCAAG
AAATAGATACCTCTGCAGAACACTAAAAATGTCGACGGAAACTACACCAT
CGATGGAATCTGAAAAGTACCCTTTACCGAAGCTAGAAGATGGCCGTTTC
CAGCTCCCTTGGGGTAGAAAACGTCCTGGTGTACATCAAGTCTTATGGGG
TTTCTATAAAAGCAAAGAGACGTCTGGTATTCCTTCCAAACAGGTACTCA
tgcttatattttttatataatttttggaATGTATTAGATTTTGTGAAACT
TTAAGTTGGTTGGATTTAATGTATATCTACCAAATCTTCCAAAGACCTTT
GAGAAGAATTGCGGCTAAAATatttgttaacttttttttttttttttttt
ttttgcttgaaattttttttttttaaaaaggggaaaggggaagaaaaaaa
aaaaaaaaatttaattatttttgttgtttttttttttttttttttttttt
cgtagtAGTATTTGCATTGATAAAAAGGGTTAAGGTGAAGTAAGTAAaga
agcaatctgattggctgataAAAAACTGGTCATTCAGGCTAAAAATGTTC
ACAGGCTAGATTCATCATCAGGCTTGACCTACTCTCTCAGCCTAGATTCG
TCATGATTTTTTCgattggaaaaataaattttaaaatagttaaggctgaa
tcttgtgttctctgtgttcttgtgtccaccgtgatgggaaaaataaattc
taaaatagtaaggctgaatcttgtgttcttgtgtccactgggatgggaaa
attaaattataaaatagtaagactgaatcttgtgttctctgtgttcttgt
gtccccacgattggaaaaataaattataaaatagtaagactgaatcttgt
gttctctgtgttcttgtgtccaccatGATGGGAAAAAttaattctaaaat
agtaaagctgaatcttgtgttctctgtgttcttgtgtccaccacgatagg
aaaattaaattctaaaatagtaaagctgaatcttgtgttctctgtgttct
tgtgtccaccacgataggaaaattaaattataaaatagtaagactgagtC
TTGttttctctgtgttcttgtgtccccacgattggaaaaataaattataa
aatagtaagactgaatcttgtgttctctgtgttcttgtgtccaccacgat
aggaaaaataaattataaaatagtaagactgagtcttgtgttctctgtgt
tcttgtgtccccacgatgggaaaaataaatttcaaaatagtaagactgaa
tcttgtgttcttgtgtccaccacgatgggaaaaataaattctaaaatagt
aagactgaatcttgtgttctctgtgttcttgtgtccaccgcaatgggaaa
attaaattctaaaataataaggctgaatcttgtgttctctgtgttcttgt
gtccaccacgatgggaaaaataaattctaaaatagtaagactgaatcttg
tgttctctgtgttcttgtgtccaccacgatgggaaaaataaattctaaaa
tagtaagactgaatcttgtgttctctgtgttcttgtgtccaccgcaatgg
gaaaattaaattctaaaataataaggctgaatcttgtgttctctgtgttc
ttgtgtccaccacgatgggaaaaataaattctaaaatagtaagactgaat
cttgtgttctctgtgttcttgtgtccaccgcaatgggaaaattaaattct
aaaataataaggctgaatcttgtgttctctgtgttcttgtgtccaccacg
attggaaaaatcgattctaaaatagtaaggctgaatcttgtgttctctgt
gttcttgtgtccaccgtgatgggaaaaataaattctaaaatagtaaggct
gaatcttgtgttctctgtgttcttgtgtccaccgtgatgggaaaaataaa
ttctaaaatagtaaggctgaatcttgtgttctctgtgttcttgtgtccac
tgggatgggaaaattaaattctaaaatagtaaggctgaatcttgtgttct
ctgtgttcttgtgtccaccaagataggaaaaataaattctaaaatagtaa
gactgaatcttgtgttcttgtgttcacaggtcacaggtcacgggtcacag
gtcatacaaattacagaccggaaaactgtaacacactcgtaacatacaac
tcataacataagttcctgaaaatattatatgtaatagaaatataatatca
aagtatgttatttagaagacttaaacgacaaatcataaaccccaaatatt
gacaacaaatgacacttaaattatgtaaataatgaggttatctcaaagta
tgaggttttgtcCACCAattaacataaaaatatttttcatgcataatagg
atgctgacgctgcaagtggatatatatTGATAGGTTTTGAaacaagagag
ctgttttagagatatgaaaatagtgacgtcattttatcaaaaacacaaag
caggggataaaaatattgaaacatttataaaatataatcccattgatact
attttcatcaattcttgttgccatacccaaggtgatgcatgagttaaaat
gagatatgacatagtgattgtgtaattgataaaatcggacacaagaacac
agagaacacaagattggatttgggaattctgtaattgataaaatcggaca
caagaacacagagaacacaagatttgNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgataaaaaga
tataaaaattgtaCACGGTAATGTTGCTAAAAATAGAGATAAgggaaaaa
aattcctaaactAAAAACATTCGCAGGAGTTAGAAGAAGACATTACTGCC
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtgccattttatgcttgagacgtatgtag
taaatgttaaatctagtatgaattaggatcctaacctaagaatgtactgt
aagaatattttaggatgattttcactaaaaagttaagaatatccatgatg
aaatggatttacaccattcttataaaaaaaaagcgtgtatgtttATTCCA
GTTTAATGATTCGTCAATTATTACTCCAAGGAAAGTTGTATCATACACAC
GTTTAATATTACTATTATTAATGCAGAGCGATGGCAATCTCAGAGGTAGG
TCATCGACTTTATTTCGCTTGCAAAATAATATGTATTTAGTCTTTTTAAC
ATTTAGAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTCTAAGT
TTTTGTCAGTCACTCCGTATCGTTCAAGTTTTGCTGTCAGTATGTTATGG
TCAACAGTGTCAAAAGCCTTTGATAGGTCAATGAAAACACCAATGGTGAA
TTCATTTCTTTCGAAGGAGTCTGAAATTTTGTCGATTAATCCTAGTAAAG
CATGTTCTGTAGAATGTTTACGTTGAACGTTGAATAACGATTTTATGAAA
CCTTTCTTTGATTTCGAGGACAAGCCTTAATTCTTAGCTCGTTAAAATTA
CATCTAACTTTGTTTAGAGCTTGAAaaagatatgaaaaaaaaaccagGAT
AAATCACTATAAGTGCAATATTTAAACCTAAGTTATGAGAGGAACAGTAG
AAACTCTAAACCTTAGAGGGCCTTGTAGGATTTATTGCTTTCCCTTTTTT
CTTAAGGAATTGGATGCCATAGAGGcgatgaaaattcaaaagttagacAC
CGAGAAATTATTCAACCCTCCGTCAACTAACATTCAAGCTACATGGTTAG
GCCACGCCAGCTATCTGATACAATTCTCCGGAATTAACATTTTATTTGAT
CCCGTATTTGGTGATCGTATCGGACCGGCTACTTCTTATGGGGCTGGACA
AGCAAGATATCGGAAGTGTCCAGTGACGGACGTATCCGAGCTTCCACCGA
TCGATATTGTTTGTGTATCGCACGATCATTATGATCATTTAGACCGCGCA
ACCGTCGAGCGGCTGCAAGCGGTCCATGACGATACTATACACTGGTTTCT
ACCATTGAAATTTGATGACTGGATGAACAGTCTAGGACTAAAAAATGTGA
ACGTCAAAACCTTTAATTGGTGGGATGAGGACAATATTGAAATCAAGAAT
AAGTCGGAAGAAGTTAAGGCTACCATCGCTTTCGTTCCTGCTCAGCATTG
GTGCTTAAGGGGGCTTACACGGAAAGGTTTCATTCCTTCATCAGATGAGA
ACACCCGTCTTTGGGGTGGATGGATTGTTAAATCAGGTGGTAAAACGATT
TATCATGCAGGTGATACAGGATATTGTCATATTTTTAAAAGCATTGGTGA
AAGATATGGTGAAATTGATTTATCTTTGTTGCCGATTGGAGCATACACTC
CAAGGTAAATTCATCAGCCCTAGGTTTGATTATGCTTACTTAAGCACTCT
ATTCAAACTAGCTTAGTCttaaaagatcttgtaattttGTAGAGATAATG
AGTCGGCATCTCTTTAATAACAGTTTATCCGGCGTAATATTCCGGTCGAC
TTTAGTCTTTCGTTTTCGTAAAATCCAAAACAAAACCGAATCGAATTATG
CTTACTGTCCAAATATGACATGTtgttttttcctcaattttagttgagct
agaatctgagaatttCTGTCTGTCCGTATATGTCTGTCTTCGAAGTCCCC
AGGAGCTTGAACCAGTGTGGTTCACACCATTGTGAATATCTAAAAACTGC
CTGGATGTAACAAATCATATCTTTACTCTATCTTCTATCCAGAGAAGTGT
TAAAGTTTCAACATATCAATCCAGAGGAGGCCGTACTGATTCACCAAGAT
GTTCGATCCAAACAAAGTCTTGGTATGCATTGGGGAACCTTCGAATTGAC
AAAAGAGGTAAAGATAAGATAGTGCTAAACGCTAAAGTATCTAAtactta
agggaacttattttcgcggaattaattttcgcggtgcGAAGGAACTAAAT
TGGCGCATTCTGcggaactaaattttgacgcACAGCCTTATTTATCGATT
TTTAGTTCATTATTCTTGTGagtcaggaagaaaagacacatttttattct
gctactggcagtttcataccacttttgtgacaatcttcaggcacacaaaa
gtggcatgaaactgccagtagcagaataaaaaagtgtcttttcttacTGA
CTGACATCGCTCAACATATGTATCGAGCACTGTAAAAGACTGAAGAATTA
CTTACATTATTCTTGTCAgtaatttttcaagaaattaaaTCTCATATCAT
TGCTATTGAATTTTGTTCTCTGACAACCCTGCGTTacgattttcatgttt
ttattatacCACTCCAAAATAACTTTCTTTTCTTACAGCCATACCTTGAG
CCTCCTGATCGCTTGAAGAAAGCCATGGAAGAGAAAGAACTCAACCCAGA
ACATTTTATAGCTTTAAAACATGGTGAAACGAAATTGATAGGAGATGTGA
GTGAAACTGTACTACCGAAACAAGAGATTCTTGAAACAGAACTGGAATTA
AATAAATTGTGAATATTTCCACGATTTTCCATGGATTTGGGAGGTACTTT
CGAtggaatttcaaaatattttgtgaaaattatcaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021535-exon-sc0000389-1491911889:159147..159275 | TCONS_00021535-exon-sc0000389-1491911889:159147..159275 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1510915933:159147..159275 | TCONS_00021535-exon-sc0000389-1510915933:159147..159275 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1575043694:159147..159275 | TCONS_00021535-exon-sc0000389-1575043694:159147..159275 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1491911889:159739..159939 | TCONS_00021535-exon-sc0000389-1491911889:159739..159939 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1510915933:159739..159939 | TCONS_00021535-exon-sc0000389-1510915933:159739..159939 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1575043694:159739..159939 | TCONS_00021535-exon-sc0000389-1575043694:159739..159939 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1491911889:164253..164950 | TCONS_00021535-exon-sc0000389-1491911889:164253..164950 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1510915933:164253..164950 | TCONS_00021535-exon-sc0000389-1510915933:164253..164950 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1575043694:164253..164950 | TCONS_00021535-exon-sc0000389-1575043694:164253..164950 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1491911889:165339..165453 | TCONS_00021535-exon-sc0000389-1491911889:165339..165453 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1510915933:165339..165453 | TCONS_00021535-exon-sc0000389-1510915933:165339..165453 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1575043694:165339..165453 | TCONS_00021535-exon-sc0000389-1575043694:165339..165453 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1491911889:165935..166184 | TCONS_00021535-exon-sc0000389-1491911889:165935..166184 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1510915933:165935..166184 | TCONS_00021535-exon-sc0000389-1510915933:165935..166184 | Clytia hemisphaerica | exon |
| TCONS_00021535-exon-sc0000389-1575043694:165935..166184 | TCONS_00021535-exon-sc0000389-1575043694:165935..166184 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000389 | supercontig | sc0000389:159147..166184 + |
Blast
BLAST of TCONS_00021535 vs. Swiss-Prot (Human)
Match: NAPEP (N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D OS=Homo sapiens GN=NAPEPLD PE=1 SV=2) HSP 1 Score: 271.937 bits (694), Expect = 1.024e-85 Identity = 146/352 (41.48%), Postives = 202/352 (57.39%), Query Frame = 1
Query: 217 KLEDGRFQLPWGR-KRPGVHQVLWGFYKSKETSGIPS-KQELDA-IEAMKIQKLDTEKLFNPPSTNIQATWLGHASYLIQFSGINILFDPVFGDRIGPATSYGAGQARYRKCPVTDVSELPPIDIVCVSHDHYDHLDRATVERLQAVHDDTIHWFLPLKFDDWMNSLGLKNVNVKTFNWWDEDNIEIKNKSEEVKATIAFVPAQHWCLRGLTRKGFIPSSDENTRLWGGWIVKSGGKTIYHAGDTGYCHIFKSIGERYGEIDLSLLPIGAYTPREVLKFQHINPEEAVLIHQDVRSKQSLGMHWGTFELTKEPYLEPPDRLKKAMEEKELNPEHFIALKHGETKLIGDVSET 1263
K +DGRF PW K P + VL K+ S +PS K+ELD + +K + + ++ TWLGHA+ +++ + L DP+F R P S G R+R+ P T +SELPPID V +SH+HYDHLD +V L + + WF+PL DWM G +NV +WW+E+ + +K T F P+QHWC R L D+N LWG W V + AGDTGYC F+ IG+R+G DL+ +PIGAY PR +K+QH++PEEAV IH DV++K+S+ +HWGTF L E YLEPP +L +A+E LN E F LKHGE++ + + E
Sbjct: 59 KGKDGRFVNPWPTWKNPSIPNVLRWLIMEKDHSSVPSSKEELDKELPVLKPYFITNPEEAGVREAGLRVTWLGHATVMVEMDELIFLTDPIFSSRASP--SQYMGPKRFRRSPCT-ISELPPIDAVLISHNHYDHLDYNSVIALNERFGNELRWFVPLGLLDWMQKCGCENV--IELDWWEENCVPGHDK-----VTFVFTPSQHWCKRTLM--------DDNKVLWGSWSVLGPWNRFFFAGDTGYCPAFEEIGKRFGPFDLAAIPIGAYEPRWFMKYQHVDPEEAVRIHTDVQTKKSMAIHWGTFALANEHYLEPPVKLNEALERYGLNAEDFFVLKHGESRYLNNDDEN 392
The following BLAST results are available for this feature:
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