TCONS_00021539 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021539
Unique Name	TCONS_00021539
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	873

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000389:234095..238090+

transcript sequence

>TCONS_00021539 ID=TCONS_00021539|Name=TCONS_00021539|organism=Clytia hemisphaerica|type=transcript|length=873bp
TTTTTAGGCTCAATAATATCTAATTCAAAACATAATACAAAGCAACATAG
AATAACAACATAAGAATCATggggaaaatgaagaaaaagGGAGAAAGTGG
TGCTGCCACAAATTACATCAGCCGAAACCAAGCTCTCAAGAAACTTCAAT
TAAGTTTGGCTGATTTTAGACGACTGTGTATCATGAAAGGGATCTACCCA
AGAGAACCAAAGAACAGGAAAAAAGTCAACAAAGGCAGTACAGCATATAA
AACATACTACTATGTCAAAGATATCCAATATATTGCTCATGAGCCTGTAC
TGAAAAAGTTTCGAGAATTTAAAATCTTCATGCGGAAACTGAAGCGTGCT
ATGGGTCGTGAGGAGTATGGGGATGCCAAACGTATCGAGGAAAATAAACC
TGTTTATACATTAGATCATATCGTCAAAGAAAGATATCCAACATTTACAG
ATGCACTTCGAGATTTAGATGATGCTCTATCAAtggtgtttttgttttca
atgctACCccaaacaaatcaaataaaagGAGAGTTTATTCAAAGATGCAA
ACGTCTGAAAGTTGAATTTCAACATTATATCATTGCTTCAAACTCCCTGA
AGAAGGTGTTCATCTCAATCAAAGGCATATATTACCAAGCAGAGATTCAA
GGACAAAAAATTACATGGGTTGTTCCACATCAATTTGCTCAACATctgCC
CAACGATGTTGATTTCCGCATAATGATGACATTTATTGAGTTCTATACAA
CGATGGTTGGTTTCATCAACTTTCAGTTATACCACAATGTTAATTTGGCT
TACCCTCCACAGCTGAATAtcaacaataacaataaagaaTCGTCCGATAC
AAAATATTGCCAAGAAGTTGATT

Run BLAST on NCBI

transcript from alignment at sc0000389:234095..238090+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021539 ID=TCONS_00021539|Name=TCONS_00021539|organism=Clytia hemisphaerica|type=transcript|length=3996bp|location=Sequence derived from alignment at sc0000389:234095..238090+ (Clytia hemisphaerica)
TTTTTAGGCTCAATAATATCTAATTCAAAACATAATACAAAGCAACATAG
AATAACAACATAAGAATCATggggaaaatgaagaaaaaggtACGTTTACA
TTAGTTTAATCCTTTAATAACATCTGTGATATTTACTGCTTATCATTTGA
TTTGGAAGTAATAATTTTTTGTCATACTTTCATTAGTTATGAAACTGGTA
AAAATGAAGTCTGTTTACAATATATTTCCCATAATTCACAAGGCTTTAAA
TTAAAAAGTtgcattttttactttttgtttttagacttgacttatTTTAA
ATACCCTACTCATCTGTACTTATGAGTTTTTACAGGTTTCTAAAGTGAta
gtccatttttcaaaaatgtaaaacaaACGTAAAAAGGGTTTAAATTAGCT
TTGGTTATTCATTTTAATCCTTGATAAATATTTCATGTAGTCTTAGAAAA
AAGCTTCTTTTTGTGAAATATCCATGTTTCTTAATCTAGCTTGTTCTGTG
TTTTATTCTAGGGAGAAAGTGGTGCTGCCACAAATTACATCAGCCGAAAC
CAAGCTCTCAAGAAACTTCAATTAAGTTTGGCTGATTTTAGGTAATTATa
atgaataaaaatatataatatatatatagtgGCCAAAAAGGAATTATTTG
TAAAGGATAAGTGAAtttcaatataattttcaaGGGAGGATAATCAACTA
AAATCAGTTCAATATTAAAAGAATTGGCTTGGCTTGGGAATAGCAGCTAC
TAGGATTTATTGACTTGGTGCTTCCAAATATTTTAATCGCCATGTAACTG
TTATATAAAGACTGCCAATAAATAtaagaaatgaaagaaataaaTATCTA
GAAAGATTTTGATAGAGATCGATAGAGATCTGAAATAATCATATTATTTT
AACATTGAAATTTTAGTTGGTAAAAATATTTGCAAACTTTTCTCTGGACC
TTGGAAAGACTTTTTTGGATTGAATTTCATTTCTTATCTAGTTTAGctct
tcttaaaaaaaataagattttcaaaaaccttTGATTTTAGACGACTGTGT
ATCATGAAAGGGATCTACCCAAGAGAACCAAAGAACAGGAAAAAAGTCAA
CAAAGGCAGTACAGCATATAAAACATACTACTATGTCAAAGATATCCAAT
ATATTGCTCATGAGCCTGTACTGAAAAAGTTTCGAGAATTTAAAATCTTC
ATGCGGAAACTGAAGCGTGCTATGGGTCGTGAGGAGTATGGGGATGCCAA
ACGTATCGAGGAAAATAAACCTGTTTATACATTAGATCATATCGTCAAAG
AAAGGTTGGTATAATGTCTGTAAATTCTACACTTGATGATTGTCATAAAA
GATTTAATAGGCTTCAAGATATGGTAAATAAaagaaacctttttcaacaa
aGCCTGTTTTTAAAATATCAAGATTGTCTGTCACAGTATCAACATGATGG
ATGTAATTTTCAAGTTTGATAAAGAAGTAAACCTGATaaattttctttgc
aaattCTTCAGATATCCAACATTTACAGATGCACTTCGAGATTTAGATGA
TGCTCTATCAAtggtgtttttgttttcaatgctACCccaaacaaatcaaa
taaaagtaCAATACAATTTTACCAATTCCTTCCATTTAAATGTCACACAT
GTTTGTCTTGTATGCATGTTAATTGTCAATGACAGTTTATAGATGGGGGT
TTGTAGAGGTTGGAAATACCGTTTTCTCGTCAAGATTTTTGATGATTCCC
AGactcccgaaaattgaaaaaataataacactgTCACACCGGTTTGAAGA
GGTTAAAATACcagcataatgacaaaaaataaggctaaatacCATGACCA
TCTGATTTTATACACTTTTCCctgtctcttttttcgtcaaatccagTAAT
GTTGTACTAAAATAGGGCCCGTCACACCGAAAAAGTATAAACCCTCCCTT
TATAATTATATGATTTGGATTATTTTAGAAAAGTGTATTCACTAAATTTT
CAGACAAGCATTTGAGTcattaaaatttttaactttaggGAGAGTTTATT
CAAAGATGCAAACGTCTGAAAGGTTCGAATTTATCTTTTACTTTTACTAT
TGTACATAcgtatcttttttctttatgtGATGATTTTCAAAGTGGTCACT
GTTTAGTAATGCAGTAGTTAAAATTAGAATAATGATCTCAATAACAAGTc
gtattttaaatatttgcaaaTATTTTTACTCTCTTTTAGTTGAATTTCAA
CATTATATCATTGCTTCAAACTCCCTGAAGAAGGTATAACAGCTTATTGA
TCACATTTCATCAAACAAAAACACCAATCTTTTTATTTAGAACTaagaat
tttggtttttatatCTAAATCTTACTCTTTTCAATGTTTGACTAACAAAG
CacattccattatttttactaattttttttttttacttgtaaaGGTGTTC
ATCTCAATCAAAGGCATATATTACCAAGCAGAGATTCAAGGACAAAAAAT
TACATGGGTTGTTCCACATCAATTTGCTCAACATGTATGTGATCATGTTT
GCCTAActcataaaatttcaatttgtcGACAACTTTACTCAGCCCAGGGC
TGCCCTGCTATGTACTCACTACATATATCCAAAACATGATCTTTCAGTAG
ACGTTTTCTCTAACAATCCTTTTCTGTTGAAGGGGAAACGGAAGCTTGAC
ATTTCTAGATGATTGTTTATGATTAAaattaaagggacattacagtactt
gcgaaatttgtaaacaaactgtatgcagcggatacaaaatcaaaacaaat
gtcacatgtcaaaataaaaatcaaactaaatatggctaattttgattgtt
caattgttttacaagtttgttttggacacgtgattttaattgttcccttt
aatgacacgtggttcgtgcaatgtttacattttactactttaatgtccct
ttatgtttaaacatttaaaggttgctttgtcttttcttttttagctgCCC
AACGATGTTGATTTCCGCATAATGATGACATTTATTGAGTTCTATACAAC
GATGGTTGGTTTCATCAACTTTCAGTTATACCACAATGTTAATTTGGCTT
ACCCTCCACAGGTACAGATCATATTGTAGAATATGTGGTCACGACATTAG
TCATTTACCATAAAGATTTTCTACCATTATTGGTCAGGAAAGTGTGTTAT
GAATGATATGAAATAATAATGGGactcataaaatattttaaaacgtTACG
caaatttcatcttttaaaaaCCTTGATCTTTGATTTCTGACCCTCAAAGA
TTGGCAAGAAAGTGGGTTTACCTTATATGTATTTTACTTTGCACAGCTCC
ATCACACAAGCTGTTTTAATGTTGTACCAATTGGCTCTCTGTAGCAATAG
TTCTATCCCCTGGAAATAGGATTTTATGAAACATCTATATAAAGGTTATA
GAGGTATAACATGAAGGGGATCAAAGGGGAACTACAGATATTTTTTCATT
GTTGTGTtaaatatggcaaaaatttcatatggcaaaaattttcttgaaac
cTGTTTTTAAAGCTACACCTTTGAGCATATAGGCTTTTGGCCGATTACCA
GTATACTCTGGTATACTCGTAGTGAATGGGTCAGAATACCAGTAGATCTT
TCTTGGGGATATAACTGTTGATACAGCATCAATTAGAatacattttggtc
aaaatagcCTTAAAAAGTCAACAAACTATCGTTGGAATTGATAGGTATCG
GTTGAATAtcaacaataacaataaagaaTCGTCCGATACAAAATATTGCC
AAGAAGTTGATTATaaagtttcttgttttttaatttttgacagCTGAATA
TCAACATTAACAATAAAGAATCGTCCGATACAAAATATTGCCAAGAAGTT
GATTATaaagtttcttgttttttaatttttgacagCTGAATAtcaacaat
aacaataaagaaTCGTCCGATACAAAATATTGCCAAGAAGTTGATT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012077	XLOC_012077	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000389	supercontig	sc0000389:234095..238090 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.7588	17.3497	7.04429	4.05353	38.7301	30.3455	30.2517	32.3857	23.6406	22.0578	40.0814	42.9838	54.5533	65.1456	45.7736	47.4003	17.4081	35.9078	21.1886	22.641	64.1837	64.6994	27.6445	38.7432	41.2687	58.3337	26.7939	40.0341	15.9707	23.539

Blast

[Close]

BLAST of TCONS_00021539 vs. Swiss-Prot (Human)
Match: PESC (Pescadillo homolog OS=Homo sapiens GN=PES1 PE=1 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 1.204e-117
Identity = 158/249 (63.45%), Postives = 204/249 (81.93%), Query Frame = 3

Query:   72 GKMKKKGESGAATNYISRNQALKKLQLSLADFRRLCIMKGIYPREPKNRKKVNKGSTAYKTYYYVKDIQYIAHEPVLKKFREFKIFMRKLKRAMGREEYGDAKRIEENKPVYTLDHIVKERYPTFTDALRDLDDALSMVFLFSMLPQTNQIKGEFIQRCKRLKVEFQHYIIASNSLKKVFISIKGIYYQAEIQGQKITWVVPHQFAQHLPNDVDFRIMMTFIEFYTTMVGFINFQLYHNVNLAYPPQLN 818
            G  KKK E G+ATNYI+RN+A KKLQLSLADFRRLCI+KGIYP EPK++KKVNKGSTA +T+Y +KDI+++ HEP++ KFRE+K+F+RKL++A G+ E+   +R+++NKP Y LDHI+KERYPTF DALRDLDDALSM FLFS  P+T +   + IQ C+RL VEF HYIIA+ +L+KVF+SIKGIYYQAE+ GQ I W+ P+ F+   P DVD+R+M TF EFYTT++GF+NF+LY  +NL YPP+L 
Sbjct:    3 GLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTAARTFYLIKDIRFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIIKERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVQTIQLCRRLTVEFMHYIIAARALRKVFLSIKGIYYQAEVLGQPIVWITPYAFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQLLNLHYPPKLE 251

The following BLAST results are available for this feature:

BLAST of TCONS_00021539 vs. Swiss-Prot (Human)

BLAST of TCONS_00021539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PESC	1.204e-117	63.45	Pescadillo homolog OS=Homo sapiens GN=PES1 PE=1 SV...	[more]

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TCONS_00021539 (transcript) - C. hemisphaerica