TCONS_00021558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021558
Unique NameTCONS_00021558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021558 ID=TCONS_00021558|Name=TCONS_00021558|organism=Clytia hemisphaerica|type=transcript|length=660bp
GAAAAAGGAAATAGCAGACAACCCACAGATCACAAAAGAACTTTTAAGTA
CCGTCACCCTAAAGAAAGTGACCAAGGTCTTGACAGAATCAAACAAGGAG
AATCTCCCTTCGAGTGGAGGAGGACCCATGATCTCACTTTCTCAACTTAA
AAAAGTGAAGTTGAAACGAACTACCGTTTCACCGAAGCGGTTGACTCCAA
GGCGACGGGATGGCCAAGGATCATCTGCTATCAAACACAGCGGTGGTCGG
AGATCTCATGAAAAGAAAAGGTTATTACTAAATCAGTAAAGAGGCTTGCA
ACCACTACTATTCTttatttggactaaaatttactATCAGCAATCTTGAT
CTGAACCGAAAAGTCGTACCCTTCCAGGGATAGTCGGTACTAAGATCTCA
ACCATCATGTTTTTTAAGTGACGCGGTGGTAAATAAATTAacttaaaaat
agattttagtaCCCACCCCCCCCCATCCTGACTCCACTGGTCGTtattac
tgaggttaagcataccaggataatcacgacgacggacggaAATCGGCTTT
TTGAGCCTtcaatgtttcttacatgtttctaaactttgtcaagcttaaag
gacgcatgttgataatacaatagtctaatagactaatctacggtactttc
ctatcttcta
Run BLAST on NCBI

transcript from alignment at sc0000389:172192..172851-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021558 ID=TCONS_00021558|Name=TCONS_00021558|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at sc0000389:172192..172851- (Clytia hemisphaerica)
GAAAAAGGAAATAGCAGACAACCCACAGATCACAAAAGAACTTTTAAGTA
CCGTCACCCTAAAGAAAGTGACCAAGGTCTTGACAGAATCAAACAAGGAG
AATCTCCCTTCGAGTGGAGGAGGACCCATGATCTCACTTTCTCAACTTAA
AAAAGTGAAGTTGAAACGAACTACCGTTTCACCGAAGCGGTTGACTCCAA
GGCGACGGGATGGCCAAGGATCATCTGCTATCAAACACAGCGGTGGTCGG
AGATCTCATGAAAAGAAAAGGTTATTACTAAATCAGTAAAGAGGCTTGCA
ACCACTACTATTCTTTATTTGGACTAAAATTTACTATCAGCAATCTTGAT
CTGAACCGAAAAGTCGTACCCTTCCAGGGATAGTCGGTACTAAGATCTCA
ACCATCATGTTTTTTAAGTGACGCGGTGGTAAATAAATTAACTTAAAAAT
AGATTTTAGTACCCACCCCCCCCCATCCTGACTCCACTGGTCGTTATTAC
TGAGGTTAAGCATACCAGGATAATCACGACGACGGACGGAAATCGGCTTT
TTGAGCCTTCAATGTTTCTTACATGTTTCTAAACTTTGTCAAGCTTAAAG
GACGCATGTTGATAATACAATAGTCTAATAGACTAATCTACGGTACTTTC
CTATCTTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012087XLOC_012087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021558-exon-sc0000389-1575043694:172192..172851TCONS_00021558-exon-sc0000389-1575043694:172192..172851Clytia hemisphaericaexon
TCONS_00021558-exon-sc0000389-1510915933:172192..172851TCONS_00021558-exon-sc0000389-1510915933:172192..172851Clytia hemisphaericaexon
TCONS_00021558-exon-sc0000389-1491911889:172192..172851TCONS_00021558-exon-sc0000389-1491911889:172192..172851Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000389supercontigsc0000389:172192..172851 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02784	0	1.76844	1.64391	1.3989	0.618502	0	0.23626	6.39631	6.924	2.28349	0.975556	0	0.48963	0.00588713	0.993028	6.66646	8.58491	0.678011	0.975325	0.663963	0.618023	0	0	0	0.212767	4.19026	4.26128	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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