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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021559 ID=TCONS_00021559|Name=TCONS_00021559|organism=Clytia hemisphaerica|type=transcript|length=2260bpRun BLAST on NCBI protein sequence of TCONS_00021559-protein >TCONS_00021559-protein ID=TCONS_00021559-protein|Name=TCONS_00021559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=618bp MIKRLLFSKATLGILLCSCLLLGLAYFQPDVRHSIQNLQKRLWMGSTVKTRun BLAST on NCBI transcript from alignment at sc0000389:195567..202672- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021559 ID=TCONS_00021559|Name=TCONS_00021559|organism=Clytia hemisphaerica|type=transcript|length=7106bp|location=Sequence derived from alignment at sc0000389:195567..202672- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000389:195567..202672- >TCONS_00021559 ID=TCONS_00021559|Name=TCONS_00021559|organism=Clytia hemisphaerica|type=CDS|length=18570bp|location=Sequence derived from alignment at sc0000389:195567..202672- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021559 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2) HSP 1 Score: 443.351 bits (1139), Expect = 5.993e-146 Identity = 240/581 (41.31%), Postives = 343/581 (59.04%), Query Frame = 3
Query: 285 LWMGSTVKTKLHLRDTIFKHAAVATDNKKCSKIGSQILKDGGSAVDSAIASMLCLGVMNPHSTGIGGGGFMLIYMKEKKEARVIDFRESAPSKAHENLFKGNPENGIRGGLSVGIPGELRGMQYAHELYGKLPWKKLFQPAIKLCNEGYKITESLGIALDKWKDDVINESCLRNQYIQKGKALKAGDTVYNKALGKTLSILAEAGNADPFYNGELTSTIVKEIKAQGGIISKKDLKNYEA-ISREPLVTKLGEDTVVTSPPPASGPILAYILNILKGYKMDESDNVKDPS---LIYHRFIEAFKFAYARRTELADPDHAEGIDDIVLELMNTTYAESTRQKIDDERTHKPSYYEVKNSDKVTTGTTHLVVIGPHGDAVTVMSTVNGYLGAKFRSCKLGFIYNNEMDDFSTPGLANEFGLPPSEVNFIQPNKRPLSSSAPTLILDKEFNVKLAXXXXXXXXXTTAVAQVIMNNLWFGMSIRDAIQQPRIHAQWVPDNVFAETRMPNETVNALQKKGHNMTVTDGSHAVVQAITRVSKQWKRICQKSKIAGSAFKTFCRNYLKNQVGFFAESDYRKGGEPDGF 2015
LW+ S K + ++ AAVA D K+CSKIG L+DGGSAVD+AIA++LC+G+MN HS GIGGG F+ IY ++A VI+ RE AP A +F + E +GGLSV +PGE+RG + AH+ +G+LPW +LFQP+I+L +G+ + + L AL+ + + + L + + K L+ G+ + L T LA G A FYNG LT+ IVK+I+A GGI++ +DL NY A + PL LG+ + P SGP+LA ILNILKGY ++V+ P L YHR +EAF+FAYA+RT L DP + + ++V + + +A R +I D+ TH SYY+ + GT HL V+ G AV+ ST+N Y G+K RS G ++NNEMDDFS+P + NEFG+PPS NFIQP K+PLSS PT+++ ++ V++ +G +GG+ ITTA A I+ NLWFG ++ A+++PR+H Q +P+ E + AL+ + H+ + AVVQAI R + W A SD RKGGEP G+
Sbjct: 24 LWLPSASKEP---DNHVYTRAAVAADAKQCSKIGRDALRDGGSAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAREVAPRLAFATMFNSS-EQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQGFPVGKGLAAALENKRTVIEQQPVLCEVFCRDRKVLREGERLTLPQLADTYETLAIEG-AQAFYNGSLTAQIVKDIQAAGGIVTAEDLNNYRAELIEHPLNISLGDVVLYMPSAPLSGPVLALILNILKGYNFSR-ESVESPEQKGLTYHRIVEAFRFAYAKRTLLGDPKFVD-VTEVVRNMTSEFFAAQLRAQISDDTTHPISYYKPEFYTPDDGGTAHLSVVAEDGSAVSATSTINLYFGSKVRSPVSGILFNNEMDDFSSPSITNEFGVPPSPANFIQPGKQPLSSMCPTIMVGQDGQVRMVVGAAGGTQITTATALAIIYNLWFGYDVKRAVEEPRLHNQLLPNVTTVERNIDQAVTAALETRHHHTQIASTFIAVVQAIVRTAGGWA----------------------------AASDSRKGGEPAGY 569 The following BLAST results are available for this feature:
BLAST of TCONS_00021559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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