TCONS_00021571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021571
Unique NameTCONS_00021571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021571 ID=TCONS_00021571|Name=TCONS_00021571|organism=Clytia hemisphaerica|type=transcript|length=526bp
atttggATTTGCTTGCTCAAGAATGTCATCTTTTTATTGAGTACCATTTT
CTTCATACATATACTTACTGAGctcttgaaaaaatactactatCCTATGA
CAAAAAGTCTGATTTACTCAACTCTGTATGATTGTTTTGAAAGTATTGAT
TAAAGTATAATGATTTTGATAGGGAAATGATTGTAAGAGCTTAATATACT
CAACATGTGTTTTTAGagggaaaatcacaaaatcatcattttttggcagg
cataactttttataaccTCATTTTTAGTCACTACTTGTAACCTTTTTTGG
AATCTGCATGAAATTCTctttccaatgaggggtcacatGACTACtttttg
acaaagaaaaaaatcactcctAGGGCGGCCCCTTTGAGCCATCGGTGGAA
CCTAAAAGCCCAGGTAGGGAAACCAAAAATGGTTCCTAccctaaaaattg
atgttttttcaagtttttataacCTATGGCACATTTTAAGAGGGTAATCA
GCATGATCTGCTCCTAACATAAATCC
Run BLAST on NCBI

transcript from alignment at sc0000389:223624..224149

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021571 ID=TCONS_00021571|Name=TCONS_00021571|organism=Clytia hemisphaerica|type=transcript|length=526bp|location=Sequence derived from alignment at sc0000389:223624..224149 (Clytia hemisphaerica)
GGATTTATGTTAGGAGCAGATCATGCTGATTACCCTCTTAAAATGTGCCA
TAGgttataaaaacttgaaaaaacatcaatttttagggTAGGAACCATTT
TTGGTTTCCCTACCTGGGCTTTTAGGTTCCACCGATGGCTCAAAGGGGCC
GCCCTaggagtgatttttttctttgtcaaaaaGTAGTCatgtgacccctc
attggaaagAGAATTTCATGCAGATTCCAAAAAAGGTTACAAGTAGTGAC
TAAAAATGAggttataaaaagttatgcctgccaaaaaatgatgattttgt
gattttccctCTAAAAACACATGTTGAGTATATTAAGCTCTTACAATCAT
TTCCCTATCAAAATCATTATACTTTAATCAATACTTTCAAAACAATCATA
CAGAGTTGAGTAAATCAGACTTTTTGTCATAGGatagtagtattttttca
agagCTCAGTAAGTATATGTATGAAGAAAATGGTACTCAATAAAAAGATG
ACATTCTTGAGCAAGCAAATccaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012097XLOC_012097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021571-exon-sc0000389-1491911889:223624..224149TCONS_00021571-exon-sc0000389-1491911889:223624..224149Clytia hemisphaericaexon
TCONS_00021571-exon-sc0000389-1510915933:223624..224149TCONS_00021571-exon-sc0000389-1510915933:223624..224149Clytia hemisphaericaexon
TCONS_00021571-exon-sc0000389-1575043694:223624..224149TCONS_00021571-exon-sc0000389-1575043694:223624..224149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000389supercontigsc0000389:223624..224149 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01538	0.749599	2.5888	3.03311	11.2271	11.8072	12.0865	15.5071	4.68324	3.97184	3.515	2.98145	2.23298	2.31897	1.08035	1.33604	0.924174	2.75563	1.1897	0.995952	3.10378	1.74174	1.10943	1.51662	2.69465	6.38175	1.22769	2.72309	1.56324	1.59123
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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