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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021586 ID=TCONS_00021586|Name=TCONS_00021586|organism=Clytia hemisphaerica|type=transcript|length=1114bpRun BLAST on NCBI transcript from alignment at sc0000390:61866..93101- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021586 ID=TCONS_00021586|Name=TCONS_00021586|organism=Clytia hemisphaerica|type=transcript|length=31236bp|location=Sequence derived from alignment at sc0000390:61866..93101- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021586 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 1.475e-36 Identity = 78/212 (36.79%), Postives = 114/212 (53.77%), Query Frame = 1
Query: 151 LGQRPSIFENPEEVVFASTGDSLILSCVAKGIPLPSITWT-----VPYDITPHKVLSNGSLHIQEVGFSHSGQFSCEAKNSVGSDIKFFDISVRIDGQYTPWSEWSECSLTCGEGTQWRYRTCTNPPPRNGGKDCIGDALEEQKCNLRDCDVNGKFGEWGEWNACSRKCDGGRQFRFRQCDSPPPSGNGKQCDADGEKSFDVQICNTYKCRV 771
L P I P E V + G +IL+C A G P P+ITW+ + +D + VLSN SL+I + + +F C A+N +GS + + V++ G ++ WS W CS+TCG+G Q R R C P P NGGK C G LE + C + C V+G + EW W C+R C G Q R R C++P G+ C+ + + ++ +CN C V
Sbjct: 4436 LQSPPIITLEPVETVI-NAGGKIILNCQATGEPQPTITWSRQGHSISWDDRVN-VLSNNSLYIADAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGN---AVEIIMCNIRPCPV 4642 HSP 2 Score: 130.954 bits (328), Expect = 2.290e-32 Identity = 76/220 (34.55%), Postives = 106/220 (48.18%), Query Frame = 1
Query: 424 GQYTPWSEWSECSLTCGEGTQWRYRTCTNPPPRNGGKDCIGDALEEQKCNLRDCDVNGKFGEWGEWNACSRKCDGGRQFRFRQCDSPPPSGNGKQCDADGEKSFDVQICNTYKCRVPKRIDSAIGTLYGQVNGLNLLDSGVMAKIHTSATGRVSLT-VNFTNVPQ----FTQGLSCLLTPIYLAVVN----GLEGLINSNGEFEHFSRMTFESGEVLQSS 1056
G ++PWS W CS TC G RYRTC NPPP NGG+ C G + Q+CN C V+G +G W W+ CS C GG + R R CD P P G+ C D + V CN C P A G++ G +N + + + A I S + TNVP+ + + +L PIY + G +N F+ +++ F +GE+LQ S
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGD---TTQVTRCNVQAC--PGGPQRARGSVIGNINDVEFGIAFLNATITDSPNSDTRIIRAKITNVPRSLGSAMRKIVSILNPIYWTTAKEIGEAVNGFTLTNAVFKRETQVEFATGEILQMS 4972 HSP 3 Score: 110.153 bits (274), Expect = 1.336e-25 Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 418 IDGQYTPWSEWSECSLTCGEGTQWRYRTCTNPPPRNGGKDCIGDALEEQKCNLRDCDVNGKFGEWGEWNACSRKCDGGRQFRFRQCDSPPPSGNGKQCDADGEKSFDVQICNTYKCRV 771
I G++ W+ WS CS++CG G + R R C++P P+ GG+ C G ++ CN C +G + W W CSR C+GG+ R+R CD+PPPS G+ C G +Q CNT C V
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC---GGPDSQIQRCNTDMCPV 4813 HSP 4 Score: 104.76 bits (260), Expect = 5.769e-24 Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 1
Query: 382 GSDIKFFDISVR---IDGQYTPWSEWSECSLTCGEGTQWRYRTCTNPPPRNGGKDCIGDALEEQKCNLRDCDVNGKFGEWGEWNACSRKCDGGRQFRFRQCDSPPPSGNGKQCDADGEKSFDVQICNTYKC 765
G+ ++ ++R + G ++ W W CS +CG+GTQ R R C NPPP GG C G + Q CN R+C ++GK+ W W+ACS C GG + R R C P P G++C+ +S CN+ C
Sbjct: 4627 GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQS---DFCNSDPC 4754 The following BLAST results are available for this feature:
BLAST of TCONS_00021586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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