TCONS_00021589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021589
Unique NameTCONS_00021589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021589 ID=TCONS_00021589|Name=TCONS_00021589|organism=Clytia hemisphaerica|type=transcript|length=1139bp
TGTCAATGCTTGAATTCTATAAAAGAGATATTCACCTcggcaaaatcaaa
atttaactaCAACAATAATACTGCTTTAAAAGACATTTTAATGATTTCAA
GGAAGATATTCGATTGAGGAGAATGAATAGACCCAGAGATCCCGTGGTAG
AAGGGAACCCTTCTAGGAAGATTTCTCTTTTTCAAGTTATTCCTCGAATG
CTGCGATTACGAAAAGTGAAAAGTGTGACTTTTTCGGTCGTTCACTATGA
CGAACCACGCGGTGATACGCGACAATCAACTGACTCCTTTCTCTCCTCCA
TAACGgAAGGCAACAAGAGAGAAGAAAGAAATTGGAGTAACTCTTTCATT
GTTCCTTCACCCCATCTCCTCATTTCTTTTGAtgctatatccgccattat
gaaagACGCATGTTCCTTGGTAACCAATGGTAACCTCCAATCATCAGATG
AAGTTAAAAAGATGCTACCACGCATCACGGATTTTACTAAATCAGCCATT
AAGGACATCAATCTGGATCGTTACAGGGTTATTGTCACAACTTACATCAT
TTATGGTCACACATTCCAGGGAAGGTACGCATCAGGTTTCCTATGGGACC
AAACAATGGACAGGAGCGTTGAGTATAGACATAGTATTCATAATGGCACA
CTTGTATGTGTAGCTTATCTCATTTATATGGAGTGAGTAATTGTTTATAA
AACAGTAGAATTGATACTTGTGTTATCAAGTTTAACCAAATAGGTGATTG
TACTAAACCTTAAGGTTCTGTAGCACACGCttcgtcatcattttcaaagg
aCGATGGCATCTTGGTATAATATCCTTCGTGAAATGGACGGTCCTACTGG
GAGACATTCCTTAGCGACTGTGTTCTGATGTTCATGTCTATGATTGTTTT
ACTGCGTAATTATTGCTTTAGCGCAATCCCCTCGCtatcaaaagctcatt
taatattcttCCAAAGTGAATAAGTTAGTACGTGACATGCACGGAGTTAT
CAGaatcttaaaaaattaaaaaatagtcCTTCGTATGATTTGAACCTTGC
TCCATTattattggaaaataaaaaatagatcttattttttaacTACTGCA
GAGTGTTATGTAAATATTAGTTTTATGTCCGATTATAAC
Run BLAST on NCBI

transcript from alignment at sc0000390:108012..109521-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021589 ID=TCONS_00021589|Name=TCONS_00021589|organism=Clytia hemisphaerica|type=transcript|length=1510bp|location=Sequence derived from alignment at sc0000390:108012..109521- (Clytia hemisphaerica)
TGTCAATGCTTGAATTCTATAAAAGAGATATTCACCTCGGCAAAATCAAA
ATTTAACTACAACAATAATACTGCTTTAAAAGACATTTTAATGATTTCAA
GGAAGATATTCGATTGAGGAGAATGAATAGACCCAGAGATCCCGTGGTAG
AAGGGAACCCTTCTAGGAAGATTTCTCTTTTTCAAGTTATTCCTCGAATG
CTGCGATTACGAAAAGTGAAAAGTGTGACTTTTTCGGTCGTTCACTATGA
CGAACCACGCGGTGATACGCGACAATCAACTGACTCCTTTCTCTCCTCCA
TAACGGGTAATTTTTTTCTGTGACACTCTTACCAAATCTGTCGGAGCCGT
ATATTTAGCCGTATAAAGTGTATACACGCTTTTTTGTAAGAGTGTGCTGT
TTTTTTTCGATTCATCATTAATATTCTTAACTTTTATGGAAAAGTCATTC
TAAAATATTCTTACAGTAATCTTAGGTTTGGCAATTTAACGCCAATATGC
TCTAAGAATGGTATTCTTTGCTTCAGTTGCAATTTCATGATGGTGGTATT
CTTACCATATTCTTAATTTTTTGACCAAAAAAGCTATAGTGTCCTGTGGC
GGTTCAAACTTTTTGTCAGAAATTAGTACTTAAAGTTTGATGAATGCTGA
TCGTAAGAAATCATTTTTTAGATACAGAAGGCAACAAGAGAGAAGAAAGA
AATTGGAGTAACTCTTTCATTGTTCCTTCACCCCATCTCCTCATTTCTTT
TGATGCTATATCCGCCATTATGAAAGACGCATGTTCCTTGGTAACCAATG
GTAACCTCCAATCATCAGATGAAGTTAAAAAGATGCTACCACGCATCACG
GATTTTACTAAATCAGCCATTAAGGACATCAATCTGGATCGTTACAGGGT
TATTGTCACAACTTACATCATTTATGGTCACACATTCCAGGGAAGGTACG
CATCAGGTTTCCTATGGGACCAAACAATGGACAGGAGCGTTGAGTATAGA
CATAGTATTCATAATGGCACACTTGTATGTGTAGCTTATCTCATTTATAT
GGAGTGAGTAATTGTTTATAAAACAGTAGAATTGATACTTGTGTTATCAA
GTTTAACCAAATAGGTGATTGTACTAAACCTTAAGGTTCTGTAGCACACG
CTTCGTCATCATTTTCAAAGGACGATGGCATCTTGGTATAATATCCTTCG
TGAAATGGACGGTCCTACTGGGAGACATTCCTTAGCGACTGTGTTCTGAT
GTTCATGTCTATGATTGTTTTACTGCGTAATTATTGCTTTAGCGCAATCC
CCTCGCTATCAAAAGCTCATTTAATATTCTTCCAAAGTGAATAAGTTAGT
ACGTGACATGCACGGAGTTATCAGAATCTTAAAAAATTAAAAAATAGTCC
TTCGTATGATTTGAACCTTGCTCCATTATTATTGGAAAATAAAAAATAGA
TCTTATTTTTTAACTACTGCAGAGTGTTATGTAAATATTAGTTTTATGTC
CGATTATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012110XLOC_012110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021589-exon-sc0000390-1575043694:109216..109521TCONS_00021589-exon-sc0000390-1575043694:109216..109521Clytia hemisphaericaexon
TCONS_00021589-exon-sc0000390-1575043694:108012..108844TCONS_00021589-exon-sc0000390-1575043694:108012..108844Clytia hemisphaericaexon
TCONS_00021589-exon-sc0000390-1510915933:109216..109521TCONS_00021589-exon-sc0000390-1510915933:109216..109521Clytia hemisphaericaexon
TCONS_00021589-exon-sc0000390-1510915933:108012..108844TCONS_00021589-exon-sc0000390-1510915933:108012..108844Clytia hemisphaericaexon
TCONS_00021589-exon-sc0000390-1491911889:109216..109521TCONS_00021589-exon-sc0000390-1491911889:109216..109521Clytia hemisphaericaexon
TCONS_00021589-exon-sc0000390-1491911889:108012..108844TCONS_00021589-exon-sc0000390-1491911889:108012..108844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:108012..109521 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0381397	0	0	0	0.0514217	0	0	0.045907	0	0	0	0.0507975	0.502057	0	0	0.0464879	0	0	0	0.560638	0	0	0	0	0	0.813353	0	0	0.0423328	0.0431141
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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