|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021620 ID=TCONS_00021620|Name=TCONS_00021620|organism=Clytia hemisphaerica|type=transcript|length=5676bpRun BLAST on NCBI protein sequence of Allene oxide synthase lipoxygenase protein >TCONS_00021620-protein ID=TCONS_00021620-protein|Name=Allene oxide synthase lipoxygenase protein|organism=Clytia hemisphaerica|type=polypeptide|length=641bp MFTLILADHTKRSKMHEIVAIFEPKDENVVECTIFSGRVESIVLHRDDCGRun BLAST on NCBI transcript from alignment at sc0000390:267584..289070- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021620 ID=TCONS_00021620|Name=TCONS_00021620|organism=Clytia hemisphaerica|type=transcript|length=21487bp|location=Sequence derived from alignment at sc0000390:267584..289070- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000390:267584..289070- >TCONS_00021620 ID=TCONS_00021620|Name=TCONS_00021620|organism=Clytia hemisphaerica|type=CDS|length=26964bp|location=Sequence derived from alignment at sc0000390:267584..289070- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021620 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 200.675 bits (509), Expect = 7.131e-53 Identity = 162/632 (25.63%), Postives = 289/632 (45.73%), Query Frame = 1
Query: 472 GRVESIVLHRDDCGMNDSWFVEHVAVEHDTEADVHFPLSRWLPPYKAMQFNKFDSQLPQMVKKNSPELYKQ-REAELERKKKEFAYQPIGDIKGMPRTV-----KTLPPEEAFSRDYFAEVGFTGLTGKISDSLKKMRYE-------DEFSSFNDIYKVYGGPLSPFRIPDGHAAWRTDEKFAQLRLTGPNCTVIRGVLKDGGLPRNFAINKSLLEEHFLEGQTFDQAYKNDRLFYIDYKDLSGYIAK----ASKERMVAPIALFYTRMDGTLIPLAIQLFQIASKSNPVFYPPPIDEERVWLHAKFWFGVADSNYHEPVTHLMGTHLVAGDFVTCFHNTISPSHPVYKLMLPHFIFLLNINTDGMPVLTAENGAFNKILVFGLENCYDLMLKKYQSFSLKDQGWLENDIENRGV---KNLPNYHYYEDAKPMFEAIHNYIQQCIKTIYGEDKNVEEDFELQNFAQLLCDPKEGMKGVWGNG---QFTTIEDLTKTLSTLVFILTNVHAAANFNQYDEYAYPPNFPFRLKGSPPTNKDSISEEDLVKLFDVNITLDTMELGRTLSLQGTNK----IGNYETNYEFKPEILEHYLGFINALAKIQTDNDAKNLRRRNPYPWLSPRVVPNSISI 2286
G ++ + + + +ND W+++++ ++ + FP RW+ + ++L + + + KQ R ELE ++K++ + G P ++ K LP + F D V F K ++L R+ ++F+ F I+ +S R+ + W+ D F L G N +IR + LP + ++E + +Q + +F +D++ L G A + + + API L Y + ++P+AIQL QI NP+F P D + WL AK W +D + H+ +THL+ THLV+ F + + HP++KL++ H F + INT L E G F+K G ++ + + + + E I+ RG+ +++P Y Y +D ++EAI + + + Y D+ VEED ELQ+F + GM+G +G + E L++ L+ ++F + HAA NF QYD ++ PN P ++ PPT K ++ E +V + LG +L + +G Y + + + E F L I + +N +++ PY +LSP +PNS++I
Sbjct: 63 GEIQLVRIEKRKYWLNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKL---ARDDQIHILKQHRRKELETRQKQYRWMEWN--PGFPLSIDAKCHKDLPRDIQF--DSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVKISNTISE-RVMNH---WQEDLMFGYQFLNGCNPVLIRRCTE---LPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPS--DAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEA-IKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVY--VYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLP-DRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNKKKQLPYYYLSPDRIPNSVAI 674 The following BLAST results are available for this feature:
BLAST of TCONS_00021620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.