TCONS_00021623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021623
Unique NameTCONS_00021623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021623 ID=TCONS_00021623|Name=TCONS_00021623|organism=Clytia hemisphaerica|type=transcript|length=1932bp
GTACGTTTTATACATTACCTGTTATTATGTTCTTTTTATTAGACTAAAAA
ATGGAACAAGAAATAAATAATGTTGGCATCAAATATATTGAGCTTTACTT
TCCATCTCAGTACGTTTCTCAAAAGAAACTTGAAAAGTATGATCAAGTGT
CACCTGGCAAATACACCATTGGTTTGGGTCAACAGAAAATGGGTTTCTGT
GGAGATCAAGAAGATATCCATTCCTTGTCTCTCACTGTTTTGAAGAATCT
ACTTGAAAAGAACAAGATCAACCCTAAAGATGTGGGAAGATTAGAAGTGG
GCACTGAAACATTGATTGATAAGTCAAAGTCTGTTAAAACAGTTTTGATG
CAACTATTCGAGGAGAGTGGTAATTCAGATATCGAAGGGTTGGATACTAC
CAATGCTTGTTTTGGTGGCACCGGAGCTCTATTCAATGCTATTAACTGGA
TTGAAAGTAGTTCTTATGATGGTCGTCTTGCAATTGTTATTATAGCTGAC
ATAGCAGTTTATGCTGAAGGAAATGCAAGATGCACTGGTGGTGCAGGAGC
TGTGGCACTTGCCATCGCTCCTAATGCTCCATTGGTGTTTGATACCAAGT
TGAGAGCGTTGCATATGGCTCACCAGTATGATTTCTATAAGCCAGATATG
CATTCAGAGTATCCTACCATTAATGGTCAGTTATCATTGAAATGTTATTT
GTCAGCAGTTGATACTTGTTATCAACTCTATGGGCAGAAATTCAATAAGA
AGTTTGGTTTTTCAGAAGCTTTTACTATGAAAAACCTTGATTATATGGTT
TTCCATACCCCATATTgtaaaattgtacaaaaatcgGTTGGTAGGTGCAT
TTTGAATGATTTCATCCACTCATCAAGCGAGGATTCCTGTTTTGAGAATC
TCACTAAATATCGTGGTGTTTCACTGGAAGATACCTATGAAAATGCTTCA
TTGtttaaagaaattgaaagagCTTGCGTGGAAGCAAGCAAAGacgtttt
caatgaaaaaacaaTGCCTTCATTACAAATAGCAACCAACGTAGGGAATA
TGTATTCACCATCTCTTTACTCAAGCTTGTGTAGCTTGTTATGCAACAAG
AGTATGGATGATCTACTGGAGAAAAGGATAGCTTTTTTCTCCTATGGGTC
AGGTTTAGCTTCTGCTATGTTTTCTTTGAAAGTGACTGACAAACGAGATG
AACTGGAACCATTGATTCGCGTTGTCATGGATTGCTATAAACATCTTGAT
CAGAGGAGAGAAATTGAGCCTCAAGATTTTGTCAAAACATTAGAATTGCG
TGAGAAACGTTACAATGCCAAATCATATTCACCAGAAAGTCCTGTAGCTG
ATCTTTTCCCCGGAACATATTATCTATCCAATGTAGATGACAAGTTTCGT
CGTACTTATGAACGAAAAACTTGAATTTCTGACACGTTCTTgtagttttt
tttattatatttttagagGTGCACATTTATTATACTGTTATTAAAAGAGT
GttattaaaatttcatttcacatGACGTCGTTCTTCTCTCGGACGCTAAA
CAAAATCATCGAATTTAAAACTTTTCTgtcttttataaatctttagttga
atttaaaatatttataagTGATATTTTATCTCAAGCCAAGGCACGTCCGT
CTCTTTCCTTTGTCCGGTGTCAAGTTTGTCAATTTTTCACAATTACagta
caaatttttttttcatttggcGCCTGGTGATGCGAATAAAGGAGTGTGAA
ATTCCAATTTCTATTAAAACgatattatcaaaaatattttgcttccaAAG
TTGTCATAATATAGCGACAATCTTTAAACACcccgaaataaaaaaaattg
ggcCTGTCTTGACTTGAGTTGAttgaatattttcatattaGTAGACCTTA
GATAGTAATGCTGAAATAAAGCTTCAAGGAGA
Run BLAST on NCBI

protein sequence of TCONS_00021623-protein

>TCONS_00021623-protein ID=TCONS_00021623-protein|Name=TCONS_00021623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MEQEINNVGIKYIELYFPSQYVSQKKLEKYDQVSPGKYTIGLGQQKMGFC
GDQEDIHSLSLTVLKNLLEKNKINPKDVGRLEVGTETLIDKSKSVKTVLM
QLFEESGNSDIEGLDTTNACFGGTGALFNAINWIESSSYDGRLAIVIIAD
IAVYAEGNARCTGGAGAVALAIAPNAPLVFDTKLRALHMAHQYDFYKPDM
HSEYPTINGQLSLKCYLSAVDTCYQLYGQKFNKKFGFSEAFTMKNLDYMV
FHTPYCKIVQKSVGRCILNDFIHSSSEDSCFENLTKYRGVSLEDTYENAS
LFKEIERACVEASKDVFNEKTMPSLQIATNVGNMYSPSLYSSLCSLLCNK
SMDDLLEKRIAFFSYGSGLASAMFSLKVTDKRDELEPLIRVVMDCYKHLD
QRREIEPQDFVKTLELREKRYNAKSYSPESPVADLFPGTYYLSNVDDKFR
RTYERKT
Run BLAST on NCBI

transcript from alignment at sc0000390:93754..95685

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021623 ID=TCONS_00021623|Name=TCONS_00021623|organism=Clytia hemisphaerica|type=transcript|length=1932bp|location=Sequence derived from alignment at sc0000390:93754..95685 (Clytia hemisphaerica)
TCTCCTTGAAGCTTTATTTCAGCATTACTATCTAAGGTCTACtaatatga
aaatattcaaTCAACTCAAGTCAAGACAGgcccaattttttttatttcgg
gGTGTTTAAAGATTGTCGCTATATTATGACAACTTtggaagcaaaatatt
tttgataatatcGTTTTAATAGAAATTGGAATTTCACACTCCTTTATTCG
CATCACCAGGCgccaaatgaaaaaaaaatttgtactGTAATTGTGAAAAA
TTGACAAACTTGACACCGGACAAAGGAAAGAGACGGACGTGCCTTGGCTT
GAGATAAAATATCActtataaatattttaaattcaactaaagatttataa
aagacAGAAAAGTTTTAAATTCGATGATTTTGTTTAGCGTCCGAGAGAAG
AACGACGTCatgtgaaatgaaattttaataaCACTCTTTTAATAACAGTA
TAATAAATGTGCACctctaaaaatataataaaaaaaactacAAGAACGTG
TCAGAAATTCAAGTTTTTCGTTCATAAGTACGACGAAACTTGTCATCTAC
ATTGGATAGATAATATGTTCCGGGGAAAAGATCAGCTACAGGACTTTCTG
GTGAATATGATTTGGCATTGTAACGTTTCTCACGCAATTCTAATGTTTTG
ACAAAATCTTGAGGCTCAATTTCTCTCCTCTGATCAAGATGTTTATAGCA
ATCCATGACAACGCGAATCAATGGTTCCAGTTCATCTCGTTTGTCAGTCA
CTTTCAAAGAAAACATAGCAGAAGCTAAACCTGACCCATAGGAGAAAAAA
GCTATCCTTTTCTCCAGTAGATCATCCATACTCTTGTTGCATAACAAGCT
ACACAAGCTTGAGTAAAGAGATGGTGAATACATATTCCCTACGTTGGTTG
CTATTTGTAATGAAGGCAttgttttttcattgaaaacgtCTTTGCTTGCT
TCCACGCAAGctctttcaatttctttaaaCAATGAAGCATTTTCATAGGT
ATCTTCCAGTGAAACACCACGATATTTAGTGAGATTCTCAAAACAGGAAT
CCTCGCTTGATGAGTGGATGAAATCATTCAAAATGCACCTACCAACcgat
ttttgtacaattttacAATATGGGGTATGGAAAACCATATAATCAAGGTT
TTTCATAGTAAAAGCTTCTGAAAAACCAAACTTCTTATTGAATTTCTGCC
CATAGAGTTGATAACAAGTATCAACTGCTGACAAATAACATTTCAATGAT
AACTGACCATTAATGGTAGGATACTCTGAATGCATATCTGGCTTATAGAA
ATCATACTGGTGAGCCATATGCAACGCTCTCAACTTGGTATCAAACACCA
ATGGAGCATTAGGAGCGATGGCAAGTGCCACAGCTCCTGCACCACCAGTG
CATCTTGCATTTCCTTCAGCATAAACTGCTATGTCAGCTATAATAACAAT
TGCAAGACGACCATCATAAGAACTACTTTCAATCCAGTTAATAGCATTGA
ATAGAGCTCCGGTGCCACCAAAACAAGCATTGGTAGTATCCAACCCTTCG
ATATCTGAATTACCACTCTCCTCGAATAGTTGCATCAAAACTGTTTTAAC
AGACTTTGACTTATCAATCAATGTTTCAGTGCCCACTTCTAATCTTCCCA
CATCTTTAGGGTTGATCTTGTTCTTTTCAAGTAGATTCTTCAAAACAGTG
AGAGACAAGGAATGGATATCTTCTTGATCTCCACAGAAACCCATTTTCTG
TTGACCCAAACCAATGGTGTATTTGCCAGGTGACACTTGATCATACTTTT
CAAGTTTCTTTTGAGAAACGTACTGAGATGGAAAGTAAAGCTCAATATAT
TTGATGCCAACATTATTTATTTCTTGTTCCATTTTTTAGTCTAATAAAAA
GAACATAATAACAGGTAATGTATAAAACGTAC

Coding sequence (CDS) from alignment at sc0000390:93754..95685

>TCONS_00021623 ID=TCONS_00021623|Name=TCONS_00021623|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at sc0000390:93754..95685 (Clytia hemisphaerica)
TCAAGTTTTTCGTTCATAAGTACGACGAAACTTGTCATCTACATTGGATA
GATAATATGTTCCGGGGAAAAGATCAGCTACAGGACTTTCTGGTGAATAT
GATTTGGCATTGTAACGTTTCTCACGCAATTCTAATGTTTTGACAAAATC
TTGAGGCTCAATTTCTCTCCTCTGATCAAGATGTTTATAGCAATCCATGA
CAACGCGAATCAATGGTTCCAGTTCATCTCGTTTGTCAGTCACTTTCAAA
GAAAACATAGCAGAAGCTAAACCTGACCCATAGGAGAAAAAAGCTATCCT
TTTCTCCAGTAGATCATCCATACTCTTGTTGCATAACAAGCTACACAAGC
TTGAGTAAAGAGATGGTGAATACATATTCCCTACGTTGGTTGCTATTTGT
AATGAAGGCAttgttttttcattgaaaacgtCTTTGCTTGCTTCCACGCA
AGctctttcaatttctttaaaCAATGAAGCATTTTCATAGGTATCTTCCA
GTGAAACACCACGATATTTAGTGAGATTCTCAAAACAGGAATCCTCGCTT
GATGAGTGGATGAAATCATTCAAAATGCACCTACCAACcgatttttgtac
aattttacAATATGGGGTATGGAAAACCATATAATCAAGGTTTTTCATAG
TAAAAGCTTCTGAAAAACCAAACTTCTTATTGAATTTCTGCCCATAGAGT
TGATAACAAGTATCAACTGCTGACAAATAACATTTCAATGATAACTGACC
ATTAATGGTAGGATACTCTGAATGCATATCTGGCTTATAGAAATCATACT
GGTGAGCCATATGCAACGCTCTCAACTTGGTATCAAACACCAATGGAGCA
TTAGGAGCGATGGCAAGTGCCACAGCTCCTGCACCACCAGTGCATCTTGC
ATTTCCTTCAGCATAAACTGCTATGTCAGCTATAATAACAATTGCAAGAC
GACCATCATAAGAACTACTTTCAATCCAGTTAATAGCATTGAATAGAGCT
CCGGTGCCACCAAAACAAGCATTGGTAGTATCCAACCCTTCGATATCTGA
ATTACCACTCTCCTCGAATAGTTGCATCAAAACTGTTTTAACAGACTTTG
ACTTATCAATCAATGTTTCAGTGCCCACTTCTAATCTTCCCACATCTTTA
GGGTTGATCTTGTTCTTTTCAAGTAGATTCTTCAAAACAGTGAGAGACAA
GGAATGGATATCTTCTTGATCTCCACAGAAACCCATTTTCTGTTGACCCA
AACCAATGGTGTATTTGCCAGGTGACACTTGATCATACTTTTCAAGTTTC
TTTTGAGAAACGTACTGAGATGGAAAGTAAAGCTCAATATATTTGATGCC
AACATTATTTATTTCTTGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012120XLOC_012120Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021623-proteinTCONS_00021623-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021623-exon-sc0000390-1491911889:93754..95685TCONS_00021623-exon-sc0000390-1491911889:93754..95685Clytia hemisphaericaexon
TCONS_00021623-exon-sc0000390-1510915933:93754..95685TCONS_00021623-exon-sc0000390-1510915933:93754..95685Clytia hemisphaericaexon
TCONS_00021623-exon-sc0000390-1575043694:93754..95685TCONS_00021623-exon-sc0000390-1575043694:93754..95685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:93754..95685 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.1287	17.1476	8.20647	6.36369	17.4936	12.5291	13.9246	13.7299	10.1853	11.7994	9.07459	5.9927	6.17609	4.40869	5.77588	7.26493	11.0211	10.3615	3.06437	4.23735	8.6999	7.57422	21.5077	20.5624	8.02495	9.96377	15.3028	10.4257	14.1238	16.113
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010122HMG_CoA_synthase_euk
IPR016039Thiolase-like
IPR013528HMG_CoA_synth_N
IPR013746HMG_CoA_synt_C_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004421hydroxymethylglutaryl-CoA synthase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004421 hydroxymethylglutaryl-CoA synthase activity
Blast
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BLAST of TCONS_00021623 vs. Swiss-Prot (Human)
Match: HMCS1 (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2)

HSP 1 Score: 468.389 bits (1204), Expect = 8.931e-158
Identity = 247/458 (53.93%), Postives = 331/458 (72.27%), Query Frame = 3 
Query:   69 NVGIKYIELYFPSQYVSQKKLEKYDQVSPGKYTIGLGQQKMGFCGDQEDIHSLSLTVLKNLLEKNKINPKDVGRLEVGTETLIDKSKSVKTVLMQLFEESGNSDIEGLDTTNACFGGTGALFNAINWIESSSYDGRLXXXXXXXXXXXXEGNARCTGGAGAVALAIAPNAPLVFDTKLRALHMAHQYDFYKPDMHSEYPTINGQLSLKCYLSAVDTCYQLYGQKFNKKF---GFSEAFTMKNLDYMVFHTPYCKIVQKSVGRCILNDFIHSSSED--SCFENLTKYRGVSLEDTYENASLFKEIERACVEASKDVFNEKTMPSLQIATNVGNMXXXXXXXXXXXXXXNKSMDDLLEKRIAFFSYGSGLASAMFSLKVTDKR---DELEPLIRVVMDCYKHLDQRREIEPQDFVKTLELREKRYNAKSYSPESPVADLFPGTYYLSNVDDKFRRTYERK 1418
            +VGI  +E+YFPSQYV Q +LEKYD V  GKYTIGLGQ KMGFC D+EDI+SL +TV++NL+E+N ++   +GRLEVGTET+IDKSKSVKT LMQLFEESGN+DIEG+DTTNAC+GGT A+FNA+NWIESSS+DGR A+V+  DIAVYA GNAR TGG GAVAL I PNAPL+F+  LR  HM H YDFYKPDM SEYP ++G+LS++CYLSA+D CY +Y +K + ++   G  + FT+ +  +M+FH+PYCK+VQKS+ R +LNDF++  + D  S +  L  +  V LEDTY +    +++E+A ++AS ++F++KT  SL ++   GNMY+ S+Y SL S+L   S   L  KRI  FSYGSGLA+ ++SLKVT        L+ +   + D    LD R  + P  F + ++LRE  ++  +Y P+  +  LF GT+YL  VD+K RRTY R+
Sbjct:   16 DVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFD----RDVEKAFMKASSELFSQKTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARR 469
The following BLAST results are available for this feature:
BLAST of TCONS_00021623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCS18.931e-15853.93Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
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