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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021624 ID=TCONS_00021624|Name=TCONS_00021624|organism=Clytia hemisphaerica|type=transcript|length=2926bp
ctttctttttttatgataatattttcaataatatgTACAATTACAATTAA
ACCTTCGTTAGCACAATAAAACacaattttgaataatttactttattttc
ttttttttattaagtTCATGGTGAAAGATAACCAGTGTATTGTTACATTC
ATGGGTTATATTACAGTAACTGTCTGGCAGTACTTATTCGAGACTGTTGT
CCTGGACATTTGGTGATTGTGTCTCATTTTCCCCGGNGTACTTATTCGAG
ACTGTTGTCCTGGACATTTGGTGATTGTGTCTCATTTTCTCCGATTTCTG
CGTCACTGTTGTAGGATACGGTAGTCGCGATCGAAGCTCGTGATGGGGGC
CGTTCGGGCTCTTCTTCAGGTACAGGGGCATTCGGTCGCTCTTCAGCAAT
CGGTTCCGGCGCTGCAGGGCGTGGCGGTGGTTCGTCTGCCACTTCTTCGG
ATGGCTCCTCTTCAATTCTTGGGGATTGTCTCAAGTCGCCTTGACTTCCC
TCGTGTGCACTACAGCTACTATCACTCCGTATTAATCGAGATTCTGAACT
GCACGAAAATTCGGATTTTCGTCTTGTTAACCTAGCTTGACTGCTGATGG
TGTCAGAAGGTTGTTCAAAGAAGACACTTCCATCGTCCATATCGATAATG
GTTTCTTTGTTGTTCTTTTCATCTTGTGGTTCCTCCTCTTTATCCGCTTC
TTCCNTTCTTTGTTGTTCTTTTCATCTTGCGGTTCCTCCTCTTTATCCGC
GTCTTCGTTGGTTTGCTCATCATCAGATTCACATTCAGTGTCAGTGTCCA
TCTCAGAATCACCATCACCTGCCATTTCCAATTCCTTTTTGAAGTTTTGG
ATCTCCTTCCACGTCCAACATTCCACATTCGATGCGAAATGGTGGTAAAA
CAAACAGATGGTTTGGATTCCGTATAAGCTAACAAACAGCCAAGCATAAG
TGCTGCTGTCTTGGTTTGACATGGCCATCACACCAAATACATGCGTGAAA
GCGTACACAAAAATGTAGCCTGTACACCGTCGAATGAAAATGGTGGATCG
CGTGTAAAGGTAATCATATTTACTTCCAATCCAACTCATTAACTCCCACA
CTAACAAAACATCGAAAGCGACTTGCATGATGACAATACCAATTGTGGGG
ATGAACATATAGAAGGCATCACCTCCATTTGCGTACACCCACAAGAATTG
CGTTTTACCGGAGAAGACGTAATTGTAGCCTGTTGCTGCTCCAGCCATTG
CAGCAGACATTCCAAAAGCCAAAGTGGAGTAGAAGAAGATCATGCCAATG
GAACTGGAATACAATGGTGTCATCTCATGGTAAAGATGCACTCCTTCCAC
GATGAACCAGATCGCTGAAGCgtgatgaagaaaatgaagagcTGCAGCGA
TGATTTTGGCTGATCCAAGGTCTTCACTCGTCATGACGCTCAATAAGACA
ACAGCACAGTAAATTATGAAGGTGATATCAGCGGTACGATACACCTTCAA
CATTCCCCCAAGATGTTGACATTTGAGCGCGTAAGGTAATATGATCGACG
CCAATGCAGCGAAGATACCAAAACCTGAGATAGCGTAAAGCGCGGTAGTC
AAAGAATCGCGATTCAATTTCGGTGGTGCGGGTGGTGTTATGGTGAGATC
AGAAATGATTGCATACCGACCAACTATTGTGTCACAAAGGCAGTAGAtaa
atttctcatctttttcGTGCACATAGCAGCCAGCGTCTGACCAGAAAGAG
ATACGGGAGGGATTGTACTTTACGCATCGATGATTAGTAGTGCCTTCTGG
ATCTCGAAGTTTAAACTTGATTAAAACGTAATCTTCaaagttctttttca
atggAGCTACTGAAAAAAAGAGGATGTTGCTGTTGATTTGGTATCCTAGC
TCTTCATCGGGTGCTGGGTTCGAGATGCTCGGTGGTAGTTTCTCCAAAGC
CCTTCGAATGGGTGTCGCCTCTTTCCAATAAAGGAAGTTATCGGTTGGGT
TATAGATCTCAGTGAAAATGCTACATTCATAAGAAACCATGTCCTCTTCC
AAAAGATGTGGTGGAAATTGGAAAGTATCTTCGATGTTATCTTCAGAAAA
CTCGACTTCAATCTTATTGTGTGATAATGTAAAGGACCTCTTTACCGTTC
CAAATTCAGCTGAGAAGTGAACGCCCTTGACTTTCTCGATAATTTTCCCT
CGGAATTCGGCTTGTGTTGATGTATAAGATGTGATTCTCTCAGCTCTCAA
CAATAAATACTGTGTCAATTTTTCTGCAATGTTCTGAGGCTCATCTTTGA
CTTTTCGTGAATTGCATTCAAGGTGGATATCAAACAACTTGGCATTCCTT
TGAACATCATCTGAGGTTAATTGTATAGCGCTCGTCAAATAAACGTCAGG
GTCCCATTTGGTGTACCTTCGACATCTTGTTTCAGCTGATGTGGTTGGAA
TCACCACTATTGAACTGTTTGCTGGTGTGGTTGCTGGAGCAGTAGGTTGA
ATTGTGGTATGAATCGAAGACACACTTGATGTACTGATTGTTGTTTGACT
TGCGGAAGGTGTGGCAACGACAACGTAAGTTGGATTATCGTTAGTTATTG
TCTCTGTTGATGCTATTTCCTCGATTGTTGTGAAAAGAGTTATTGTAGCG
TTCGAGAAATCGTCAAATATCGAAGATGAGTTATTTGTGGAGTTTGTAAT
GTTCAAAGCATCCACagaaaacaaaacaaccaaCAAAAGTAAAGTCATCG
TCTTTTTTGATGCAACTCTCATCTTAAATTGTCTTTAAGTTGAACAAATT
ATCAAGAAAGGTAAAATACATCTACATGTTGTTTCATTTTATCAAGTCAT
TTTTATCACTTGATTGATAATATCCCTTTCtcataatattttctttttca
tgtaaTGACAAAGCatcatcttttct Run BLAST on NCBI protein sequence of TCONS_00021624-protein >TCONS_00021624-protein ID=TCONS_00021624-protein|Name=TCONS_00021624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=731bp
MRVASKKTMTLLLLVVLFSVDALNITNSTNNSSSIFDDFSNATITLFTTI
EEIASTETITNDNPTYVVVATPSASQTTISTSSVSSIHTTIQPTAPATTP
ANSSIVVIPTTSAETRCRRYTKWDPDVYLTSAIQLTSDDVQRNAKLFDIH
LECNSRKVKDEPQNIAEKLTQYLLLRAERITSYTSTQAEFRGKIIEKVKG
VHFSAEFGTVKRSFTLSHNKIEVEFSEDNIEDTFQFPPHLLEEDMVSYEC
SIFTEIYNPTDNFLYWKEATPIRRALEKLPPSISNPAPDEELGYQINSNI
LFFSVAPLKKNFEDYVLIKFKLRDPEGTTNHRCVKYNPSRISFWSDAGCY
VHEKDEKFIYCLCDTIVGRYAIISDLTITPPAPPKLNRDSLTTALYAISG
FGIFAALASIILPYALKCQHLGGMLKVYRTADITFIIYCAVVLLSVMTSE
DLGSAKIIAAALHFLHHASAIWFIVEGVHLYHEMTPLYSSSIGMIFFYST
LAFGMSAAMAGAATGYNYVFSGKTQFLWVYANGGDAFYMFIPTIGIVIMQ
VAFDVLLVWELMSWIGSKYDYLYTRSTIFIRRCTGYIFVYAFTHVFGVMA
MSNQDSSTYAWLFVSLYGIQTICLFYHHFASNVECWTWKEIQNFKKELEM
AGDGDSEMDTDTECESDDEQTNEDADKEEEPQDEKNNKEXKKRIKRRNHK
MKRTTKKPLSIWTMEVSSLNNLLTPSAVKLG Run BLAST on NCBI transcript from alignment at sc0000390:161040..163965 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021624 ID=TCONS_00021624|Name=TCONS_00021624|organism=Clytia hemisphaerica|type=transcript|length=2926bp|location=Sequence derived from alignment at sc0000390:161040..163965 (Clytia hemisphaerica)
agaaaagatgatGCTTTGTCAttacatgaaaaagaaaatattatgaGAAA
GGGATATTATCAATCAAGTGATAAAAATGACTTGATAAAATGAAACAACA
TGTAGATGTATTTTACCTTTCTTGATAATTTGTTCAACTTAAAGACAATT
TAAGATGAGAGTTGCATCAAAAAAGACGATGACTTTACTTTTGttggttg
ttttgttttctGTGGATGCTTTGAACATTACAAACTCCACAAATAACTCA
TCTTCGATATTTGACGATTTCTCGAACGCTACAATAACTCTTTTCACAAC
AATCGAGGAAATAGCATCAACAGAGACAATAACTAACGATAATCCAACTT
ACGTTGTCGTTGCCACACCTTCCGCAAGTCAAACAACAATCAGTACATCA
AGTGTGTCTTCGATTCATACCACAATTCAACCTACTGCTCCAGCAACCAC
ACCAGCAAACAGTTCAATAGTGGTGATTCCAACCACATCAGCTGAAACAA
GATGTCGAAGGTACACCAAATGGGACCCTGACGTTTATTTGACGAGCGCT
ATACAATTAACCTCAGATGATGTTCAAAGGAATGCCAAGTTGTTTGATAT
CCACCTTGAATGCAATTCACGAAAAGTCAAAGATGAGCCTCAGAACATTG
CAGAAAAATTGACACAGTATTTATTGTTGAGAGCTGAGAGAATCACATCT
TATACATCAACACAAGCCGAATTCCGAGGGAAAATTATCGAGAAAGTCAA
GGGCGTTCACTTCTCAGCTGAATTTGGAACGGTAAAGAGGTCCTTTACAT
TATCACACAATAAGATTGAAGTCGAGTTTTCTGAAGATAACATCGAAGAT
ACTTTCCAATTTCCACCACATCTTTTGGAAGAGGACATGGTTTCTTATGA
ATGTAGCATTTTCACTGAGATCTATAACCCAACCGATAACTTCCTTTATT
GGAAAGAGGCGACACCCATTCGAAGGGCTTTGGAGAAACTACCACCGAGC
ATCTCGAACCCAGCACCCGATGAAGAGCTAGGATACCAAATCAACAGCAA
CATCCTCTTTTTTTCAGTAGCTccattgaaaaagaactttGAAGATTACG
TTTTAATCAAGTTTAAACTTCGAGATCCAGAAGGCACTACTAATCATCGA
TGCGTAAAGTACAATCCCTCCCGTATCTCTTTCTGGTCAGACGCTGGCTG
CTATGTGCACgaaaaagatgagaaatttaTCTACTGCCTTTGTGACACAA
TAGTTGGTCGGTATGCAATCATTTCTGATCTCACCATAACACCACCCGCA
CCACCGAAATTGAATCGCGATTCTTTGACTACCGCGCTTTACGCTATCTC
AGGTTTTGGTATCTTCGCTGCATTGGCGTCGATCATATTACCTTACGCGC
TCAAATGTCAACATCTTGGGGGAATGTTGAAGGTGTATCGTACCGCTGAT
ATCACCTTCATAATTTACTGTGCTGTTGTCTTATTGAGCGTCATGACGAG
TGAAGACCTTGGATCAGCCAAAATCATCGCTGCAgctcttcattttcttc
atcacGCTTCAGCGATCTGGTTCATCGTGGAAGGAGTGCATCTTTACCAT
GAGATGACACCATTGTATTCCAGTTCCATTGGCATGATCTTCTTCTACTC
CACTTTGGCTTTTGGAATGTCTGCTGCAATGGCTGGAGCAGCAACAGGCT
ACAATTACGTCTTCTCCGGTAAAACGCAATTCTTGTGGGTGTACGCAAAT
GGAGGTGATGCCTTCTATATGTTCATCCCCACAATTGGTATTGTCATCAT
GCAAGTCGCTTTCGATGTTTTGTTAGTGTGGGAGTTAATGAGTTGGATTG
GAAGTAAATATGATTACCTTTACACGCGATCCACCATTTTCATTCGACGG
TGTACAGGCTACATTTTTGTGTACGCTTTCACGCATGTATTTGGTGTGAT
GGCCATGTCAAACCAAGACAGCAGCACTTATGCTTGGCTGTTTGTTAGCT
TATACGGAATCCAAACCATCTGTTTGTTTTACCACCATTTCGCATCGAAT
GTGGAATGTTGGACGTGGAAGGAGATCCAAAACTTCAAAAAGGAATTGGA
AATGGCAGGTGATGGTGATTCTGAGATGGACACTGACACTGAATGTGAAT
CTGATGATGAGCAAACCAACGAAGACGCGGATAAAGAGGAGGAACCGCAA
GATGAAAAGAACAACAAAGAANGGAAGAAGCGGATAAAGAGGAGGAACCA
CAAGATGAAAAGAACAACAAAGAAACCATTATCGATATGGACGATGGAAG
TGTCTTCTTTGAACAACCTTCTGACACCATCAGCAGTCAAGCTAGGTTAA
CAAGACGAAAATCCGAATTTTCGTGCAGTTCAGAATCTCGATTAATACGG
AGTGATAGTAGCTGTAGTGCACACGAGGGAAGTCAAGGCGACTTGAGACA
ATCCCCAAGAATTGAAGAGGAGCCATCCGAAGAAGTGGCAGACGAACCAC
CGCCACGCCCTGCAGCGCCGGAACCGATTGCTGAAGAGCGACCGAATGCC
CCTGTACCTGAAGAAGAGCCCGAACGGCCCCCATCACGAGCTTCGATCGC
GACTACCGTATCCTACAACAGTGACGCAGAAATCGGAGAAAATGAGACAC
AATCACCAAATGTCCAGGACAACAGTCTCGAATAAGTACNCCGGGGAAAA
TGAGACACAATCACCAAATGTCCAGGACAACAGTCTCGAATAAGTACTGC
CAGACAGTTACTGTAATATAACCCATGAATGTAACAATACACTGGTTATC
TTTCACCATGAacttaataaaaaaaagaaaataaagtaaattattcaaaa
ttgtGTTTTATTGTGCTAACGAAGGTTTAATTGTAATTGTAcatattatt
gaaaatattatcataaaaaaagaaag Coding sequence (CDS) from alignment at sc0000390:161040..163965 >TCONS_00021624 ID=TCONS_00021624|Name=TCONS_00021624|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000390:161040..163965 (Clytia hemisphaerica)
ATGAGAGTTGCATCAAAAAAGACGATGACTTTACTTTTGttggttgtttt
gttttctGTGGATGCTTTGAACATTACAAACTCCACAAATAACTCATCTT
CGATATTTGACGATTTCTCGAACGCTACAATAACTCTTTTCACAACAATC
GAGGAAATAGCATCAACAGAGACAATAACTAACGATAATCCAACTTACGT
TGTCGTTGCCACACCTTCCGCAAGTCAAACAACAATCAGTACATCAAGTG
TGTCTTCGATTCATACCACAATTCAACCTACTGCTCCAGCAACCACACCA
GCAAACAGTTCAATAGTGGTGATTCCAACCACATCAGCTGAAACAAGATG
TCGAAGGTACACCAAATGGGACCCTGACGTTTATTTGACGAGCGCTATAC
AATTAACCTCAGATGATGTTCAAAGGAATGCCAAGTTGTTTGATATCCAC
CTTGAATGCAATTCACGAAAAGTCAAAGATGAGCCTCAGAACATTGCAGA
AAAATTGACACAGTATTTATTGTTGAGAGCTGAGAGAATCACATCTTATA
CATCAACACAAGCCGAATTCCGAGGGAAAATTATCGAGAAAGTCAAGGGC
GTTCACTTCTCAGCTGAATTTGGAACGGTAAAGAGGTCCTTTACATTATC
ACACAATAAGATTGAAGTCGAGTTTTCTGAAGATAACATCGAAGATACTT
TCCAATTTCCACCACATCTTTTGGAAGAGGACATGGTTTCTTATGAATGT
AGCATTTTCACTGAGATCTATAACCCAACCGATAACTTCCTTTATTGGAA
AGAGGCGACACCCATTCGAAGGGCTTTGGAGAAACTACCACCGAGCATCT
CGAACCCAGCACCCGATGAAGAGCTAGGATACCAAATCAACAGCAACATC
CTCTTTTTTTCAGTAGCTccattgaaaaagaactttGAAGATTACGTTTT
AATCAAGTTTAAACTTCGAGATCCAGAAGGCACTACTAATCATCGATGCG
TAAAGTACAATCCCTCCCGTATCTCTTTCTGGTCAGACGCTGGCTGCTAT
GTGCACgaaaaagatgagaaatttaTCTACTGCCTTTGTGACACAATAGT
TGGTCGGTATGCAATCATTTCTGATCTCACCATAACACCACCCGCACCAC
CGAAATTGAATCGCGATTCTTTGACTACCGCGCTTTACGCTATCTCAGGT
TTTGGTATCTTCGCTGCATTGGCGTCGATCATATTACCTTACGCGCTCAA
ATGTCAACATCTTGGGGGAATGTTGAAGGTGTATCGTACCGCTGATATCA
CCTTCATAATTTACTGTGCTGTTGTCTTATTGAGCGTCATGACGAGTGAA
GACCTTGGATCAGCCAAAATCATCGCTGCAgctcttcattttcttcatca
cGCTTCAGCGATCTGGTTCATCGTGGAAGGAGTGCATCTTTACCATGAGA
TGACACCATTGTATTCCAGTTCCATTGGCATGATCTTCTTCTACTCCACT
TTGGCTTTTGGAATGTCTGCTGCAATGGCTGGAGCAGCAACAGGCTACAA
TTACGTCTTCTCCGGTAAAACGCAATTCTTGTGGGTGTACGCAAATGGAG
GTGATGCCTTCTATATGTTCATCCCCACAATTGGTATTGTCATCATGCAA
GTCGCTTTCGATGTTTTGTTAGTGTGGGAGTTAATGAGTTGGATTGGAAG
TAAATATGATTACCTTTACACGCGATCCACCATTTTCATTCGACGGTGTA
CAGGCTACATTTTTGTGTACGCTTTCACGCATGTATTTGGTGTGATGGCC
ATGTCAAACCAAGACAGCAGCACTTATGCTTGGCTGTTTGTTAGCTTATA
CGGAATCCAAACCATCTGTTTGTTTTACCACCATTTCGCATCGAATGTGG
AATGTTGGACGTGGAAGGAGATCCAAAACTTCAAAAAGGAATTGGAAATG
GCAGGTGATGGTGATTCTGAGATGGACACTGACACTGAATGTGAATCTGA
TGATGAGCAAACCAACGAAGACGCGGATAAAGAGGAGGAACCGCAAGATG
AAAAGAACAACAAAGAANGGAAGAAGCGGATAAAGAGGAGGAACCACAAG
ATGAAAAGAACAACAAAGAAACCATTATCGATATGGACGATGGAAGTGTC
TTCTTTGAACAACCTTCTGACACCATCAGCAGTCAAGCTAGGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021624-exon-sc0000390-1491911889:161040..163965 | TCONS_00021624-exon-sc0000390-1491911889:161040..163965 | Clytia hemisphaerica | exon |
| TCONS_00021624-exon-sc0000390-1510915933:161040..163965 | TCONS_00021624-exon-sc0000390-1510915933:161040..163965 | Clytia hemisphaerica | exon |
| TCONS_00021624-exon-sc0000390-1575043694:161040..163965 | TCONS_00021624-exon-sc0000390-1575043694:161040..163965 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000390 | supercontig | sc0000390:161040..163965 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000203 | GPS |
Blast
The following BLAST results are available for this feature:
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