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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021630 ID=TCONS_00021630|Name=TCONS_00021630|organism=Clytia hemisphaerica|type=transcript|length=1387bp
tggttggtcgttaagatgtaataaaagaatctcattactttttctaaaga
acgcgtcatctctatcactttaaatgaccaattagtgaagtatcttgtaa
aaactccagctcatcccaaaacTTTGAATCTGAGTGAATCTATTTCTAGC
GCCCATATAATAGAgtgctttattttcttttttatctcttaattttttta
tttttcagtacCATGACAGAACATATCCAGTTATCATTCTTGGAGCTCTT
TTATTCATCCCTGGCTCTTATCATGTTCGAATTGCTTTTTATGCTTGGAA
AGGTTACAGAGGATATTCGTTCACTGACATACCAGATTTCGATTAATTAC
GCTATGTAAAAACGTCTGTTTTTAAGAGTAATTTGCCTCGAAGAATCCGT
TTCGTTTAAAATGCTATTGAATATCCCTTTAATATGCAGGTATCGACTGG
GGGAGAGATATGGGAAGACAAATATCTATAAAACAATGAAGAAACTGgaa
tgaaatattttcaaggGCTTGTAAAGACAATAGTCTGATAATGTGAATCT
TTTGCAAGTAAATctattaacattttcaattgtATACACCcatacaaaaa
tatatattagagtttttcaaatatgtacaaaatatacaactatttaattt
ttacaacaaaatatttgaaatttgtgAATTGCAATAATAAAGTGTCCGTT
TTACTTAACCTagaagtttgattaaaaattggTATAAATTCAAGAATTTA
CGAAGAAAGACAAATAAAACGCACATTTTGATGATTCTAGatgaaattac
gtaaattacccccaaaacataattttgtaatttcttaTTTATTAAACTGT
TTTACCCTCCCCTAATAATTGTTTAGTAATGTCAATATATTAACTTACAT
AGTTAGGGAAAACTCAGAGAAGGgtagaaTTTAGTCACTTGGATGGACAT
TTATTTTGTCACGTAACTGCGAACTCTTTGGAGGGGAAGGTTTTTCACCA
TCAACGTTCGAAGTTAGACCCCTGTTCCCAAAAAGAGTTAAAAAGGGGAA
AAATTATTGCACTGGGAATATCAGACACCAATCAATACAATAGAACGTCA
GCTTCTGCATCGTCATCGGTAATAATGGCTGTTTTTAACGTATTTACACT
TGTACCACATATTAACATGTTCTTTTGTTCCAAGACTTCCACTGCTTGTA
CTGGGTGCCCATCACCAGAAATTTCACCTGCAACCtgataataaaaaaat
cattataatttttgtttttattcactttaagggcagaaactttcgcgttt
ttcgcgttttcggcattttttcgcgaaagtttctgccaggtaagaaatta
aacaagaaattcgcgaaagttaatttcgcgaaaaatg Run BLAST on NCBI transcript from alignment at sc0000391:11994..13771+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021630 ID=TCONS_00021630|Name=TCONS_00021630|organism=Clytia hemisphaerica|type=transcript|length=1778bp|location=Sequence derived from alignment at sc0000391:11994..13771+ (Clytia hemisphaerica)
tggttggtcgttaagatgtaataaaagaatctcattactttttctaaaga
acgcgtcatctctatcactttaaatgaccaattagtgaagtatcttgtaa
aaactccagctcatcccaaaacTTTGAATCTGAGTGAATCTATTTCTAGC
GCCCATATAATAGAgtgctttattttcttttttatctcttaattttttta
tttttcagtacCATGACAGAACATATCCAGTTATCATTCTTGGAGCTCTT
TTATTCATCCCTGGCTCTTATCATGTTCGAATTGCTTTTTATGCTTGGAA
AGGTTACAGAGGATATTCGTTCACTGACATACCAGATTTCGATTAATTAC
GCTATGTAAAAACGTCTGTTTTTAAGAGTAATTTGCCTCGAAGAATCCGT
TTCGTTTAAAATGCTATTGAATATCCCTTTAATATGCAGGTATCGACTGG
GGGAGAGATATGGGAAGACAAATATCTATAAAACAATGAAGAAACTGgaa
tgaaatattttcaaggGCTTGTAAAGACAATAGTCTGATAATGTGAATCT
TTTGCAAGTAAATctattaacattttcaattgtATACACCcatacaaaaa
tatatattagagtttttcaaatatgtacaaaatatacaactatttaattt
ttacaacaaaatatttgaaatttgtgAATTGCAATAATAAAGTGTCCGTT
TTACTTAACCTagaagtttgattaaaaattggTATAAATTCAAGAATTTA
CGAAGAAAGACAAATAAAACGCACATTTTGATGATTCTAGatgaaattac
gtaaattacccccaaaacataattttgtaatttcttaTTTATTAAACTGT
TTTACCCTCCCCTAATAATTGTTTAGTAATGTCAATATATTAACTTACAT
AGTTAGGGAAAACTCAGAGAAGGGttccttattggtatatattttcgcgt
gttacaaattttcgtgggtacttaatttcgcgagtttttgggtccatttt
cgcgaaatttaatactgtttaaatttttcaaaattacaaaatcgccaaat
taaatacaggcgaaaattttttttttagtattttgttagtatttttacat
caaaaacgttgtgtttcaagcaaaatcagtctttttcttgctttatattc
ccactttctgaaaatacctagtttagtgaattgcgaaatttaatacacgc
gaaaattttccagaagtcggcaatcgcgaaatttaatacacgcgaaacac
gtattttccaaaaaatttcgcgattcgcgaaaatttgtaacacgcgaaaa
tatataccaataaggtagaaTTTAGTCACTTGGATGGACATTTATTTTGT
CACGTAACTGCGAACTCTTTGGAGGGGAAGGTTTTTCACCATCAACGTTC
GAAGTTAGACCCCTGTTCCCAAAAAGAGTTAAAAAGGGGAAAAATTATTG
CACTGGGAATATCAGACACCAATCAATACAATAGAACGTCAGCTTCTGCA
TCGTCATCGGTAATAATGGCTGTTTTTAACGTATTTACACTTGTACCACA
TATTAACATGTTCTTTTGTTCCAAGACTTCCACTGCTTGTACTGGGTGCC
CATCACCAGAAATTTCACCTGCAACCtgataataaaaaaatcattataat
ttttgtttttattcactttaagggcagaaactttcgcgtttttcgcgttt
tcggcattttttcgcgaaagtttctgccaggtaagaaattaaacaagaaa
ttcgcgaaagttaatttcgcgaaaaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021630-exon-sc0000391-1491911889:11994..12916 | TCONS_00021630-exon-sc0000391-1491911889:11994..12916 | Clytia hemisphaerica | exon |
| TCONS_00021630-exon-sc0000391-1510915933:11994..12916 | TCONS_00021630-exon-sc0000391-1510915933:11994..12916 | Clytia hemisphaerica | exon |
| TCONS_00021630-exon-sc0000391-1575043694:11994..12916 | TCONS_00021630-exon-sc0000391-1575043694:11994..12916 | Clytia hemisphaerica | exon |
| TCONS_00021630-exon-sc0000391-1491911889:13308..13771 | TCONS_00021630-exon-sc0000391-1491911889:13308..13771 | Clytia hemisphaerica | exon |
| TCONS_00021630-exon-sc0000391-1510915933:13308..13771 | TCONS_00021630-exon-sc0000391-1510915933:13308..13771 | Clytia hemisphaerica | exon |
| TCONS_00021630-exon-sc0000391-1575043694:13308..13771 | TCONS_00021630-exon-sc0000391-1575043694:13308..13771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000391 | supercontig | sc0000391:11994..13771 + |
Blast
The following BLAST results are available for this feature:
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